HHsearch alignment for GI: 254780784 and conserved domain: cd05699

>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=92.13  E-value=0.49  Score=27.09  Aligned_cols=67  Identities=25%  Similarity=0.277  Sum_probs=55.5

Q ss_pred             CCEEEEEEEEEEECCEEEECCC-CCCEEEEEEECCCCCCCCHHH---HCCCCCEE-EEEEEEECCCCCEEEEEE
Q ss_conf             8678999999941536998287-971048866314445478556---03259889-999997868998666873
Q gi|254780784|r  620 NKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD---VVKEGDTV-WVKLLDFDDRGKIKLSMK  688 (699)
Q Consensus       620 g~~y~~~v~~i~~fGafve~~~-g~~gl~HiS~l~~~~v~~~~d---~~~~Gd~i-~vk~~~~d~~g~i~lSrk  688 (699)
T Consensus         1 Gq~VdvkVlkkt~~GLeV~ilp~~~~afLPt~HLSD-hv~N~~LL~~~lq~GD~i~~vmCls~-~~~~iil~rK   72 (72)
T cd05699           1 GKLVDARVLKKTLNGLEVAILPEEIRAFLPTMHLSD-HVSNCPLLWHCLQEGDTIPNLMCLSN-YKGRIILTKK   72 (72)
T ss_pred             CCEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCC-CCCCCHHHHHHHHCCCCHHCEEEEEC-CCCCEEEECC
T ss_conf             960688999862887278976888542144532233-32245899998844786102578862-7882888459