HHsearch alignment for GI: 254780784 and conserved domain: pfam00013
>pfam00013 KH_1 KH domain. KH motifs can bind RNA in vitro. Autoantibodies to Nova, a KH domain protein, cause paraneoplastic opsoclonus ataxia. Q4R966.1/333-392;
Probab=98.13 E-value=8.7e-06 Score=65.73 Aligned_cols=56 Identities=41% Similarity=0.658 Sum_probs=51.0
Q ss_pred EEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHHHHHHHH
Q ss_conf 999977115000037860779989998688899808808999968989999999999
Q gi|254780784|r 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 (699)
Q Consensus 554 ~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~i~~~~~~~~~~a~~~i 610 (699)
T Consensus 2 ~~v~vp~~~~~~iIG~~G~~i~~I~~~t~~~I~i~~~~~i~i~G-~~~~v~~A~~~i 57 (57)
T pfam00013 2 EEILIPSSLVGRIIGKGGSNIKEIREETGAKIRIPDRDTVTISG-TPEAVEKAKELI 57 (57)
T ss_pred EEEEECHHHCCEEECCCCCHHHHHHHHCCCEEEECCCCEEEEEC-CHHHHHHHHHHC
T ss_conf 89998755420689989647699999739999968999799994-999999999869