HHsearch alignment for GI: 254780784 and conserved domain: pfam00575

>pfam00575 S1 S1 RNA binding domain. The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.

Probab=99.40  E-value=1.6e-12  Score=120.53  Aligned_cols=73  Identities=41%  Similarity=0.668  Sum_probs=70.8

Q ss_pred             CCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEEE
Q ss_conf             7546867899999994153699828797104886631444547855603259889999997868-998666873
Q gi|254780784|r  616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK  688 (699)
Q Consensus       616 ~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~-~g~i~lSrk  688 (699)
T Consensus         1 ~~~~G~iv~G~V~~i~~~G~fV~l~~~~~g~v~~s~ls~~~~~~~~~~~~~G~~v~~~V~~vd~~~~~i~lS~k   74 (74)
T pfam00575         1 KPEEGDVVKGTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVLKVDKERGRIILSIR   74 (74)
T ss_pred             CCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCHHHHHCCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf             98899999999999987759999789979999844613655567768305999999999999999999999839