HHsearch alignment for GI: 254780784 and conserved domain: pfam01138
>pfam01138 RNase_PH 3' exoribonuclease family, domain 1. This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components contain a copy of this domain. A hypothetical protein from S. pombe appears to belong to an uncharacterized subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Probab=99.82 E-value=5.3e-19 Score=173.26 Aligned_cols=128 Identities=34% Similarity=0.491 Sum_probs=114.6
Q ss_pred CEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 33787998447546670089998797689999816865212233445442035877405887544533455676502467
Q gi|254780784|r 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 (699)
Q Consensus 321 EIRpIs~EvgvLPrvHGSALFtRGETQaL~tvTLG~~~d~Q~iD~l~~~~~k~fmlHYNFPpfsvGE~~~~~~~~RREiG 400 (699)
T Consensus 1 e~R~i~~~~gv~~~a~GSa~v~~G~T~Via~V~~p~~~~~~~-----~~~~~~l~v~v~~~p~a~~~~~-~~~~~~~~~~ 74 (128)
T pfam01138 1 ELRPIEIETGVLSQADGSALVELGDTKVLATVTGPIEPPNER-----DFFPGELTVEYEEKPFASGERP-EGRPSEREIE 74 (128)
T ss_pred CCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCCC-----CCCCCEEEEEEEECCCCCCCCC-CCCCCHHHHH
T ss_conf 973189996977998878999989979999997054355556-----7888569999867574355334-6863166899
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999987410786446873899985311027852235667777987625950
Q gi|254780784|r 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454 (699)
Q Consensus 401 Hg~la~ral~~~~P~~~~~p~tirv~~evl~sngsssma~vc~~slal~dagvp 454 (699)
T Consensus 75 l~~~l~~~l~~~~~~~~~~~~~I~i~v~vl~~dG~~~~a~~~A~~~AL~dagiP 128 (128)
T pfam01138 75 LSRLIDRALRPSFPLEGYPRWEIRIDITVLSDDGSLLDAAINAASLALADAGIP 128 (128)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999999998864560447856999999999579998999999999999865999