HHsearch alignment for GI: 254780784 and conserved domain: pfam03726
>pfam03726 PNPase Polyribonucleotide nucleotidyltransferase, RNA binding domain. This family contains the RNA binding domain of Polyribonucleotide nucleotidyltransferase (PNPase) PNPase is involved in mRNA degradation in a 3'-5' direction.
Probab=99.26 E-value=4e-11 Score=109.16 Aligned_cols=80 Identities=35% Similarity=0.558 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 79999999989888887410001224899999999997302231000002678899999999999999872886658867
Q gi|254780784|r 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRD 318 (699)
Q Consensus 239 ~~~~~v~~~~~~~l~~a~~i~~K~eR~~ai~~l~~ei~e~l~ee~~~~~~~~i~~af~~l~k~ivR~~ILeeg~R~DGR~ 318 (699)
T Consensus 1 EL~~~V~~~~~~~l~~A~~i~dK~eR~~a~~~ik~~~~e~l~~e~~~~~~~~i~~~~~~lek~~vR~~Il~~~~RiDGRd 80 (80)
T pfam03726 1 ELEEKVAALAEERLSEAYTITGKQERYAALDEIKADVVAAFAEEEDEEDEKEIKDIFKALEKKVVRSRILDGGPRIDGRD 80 (80)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98999999999999999730135999999999999999885011541139999999999999999999985899999988