HHsearch alignment for GI: 254780784 and conserved domain: pfam10447
>pfam10447 EXOSC1 Exosome component EXOSC1/CSL4. This family of proteins are components of the exosome 3'-5' exoribonuclease complex. The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions.
Probab=90.71 E-value=0.76 Score=25.58 Aligned_cols=61 Identities=18% Similarity=0.363 Sum_probs=47.4
Q ss_pred CCCCCCEEEEEEEEEEECCEEEECCC--------CCCEEEEEEECCCCCCCC--HHHHCCCCCEEEEEEEE
Q ss_conf 75468678999999941536998287--------971048866314445478--55603259889999997
Q gi|254780784|r 616 VPEVNKIYKGQVVKVMDFGAFVHFCG--------ARDGLVHISQLSTERVAK--TSDVVKEGDTVWVKLLD 676 (699)
Q Consensus 616 ~~e~g~~y~~~v~~i~~fGafve~~~--------g~~gl~HiS~l~~~~v~~--~~d~~~~Gd~i~vk~~~ 676 (699)
T Consensus 1 lP~vGdiV~arVtrv~~~~a~~~Il~v~~~~l~~~f~G~IR~~DVRate~Dkv~~~~~FrPGDiVrA~ViS 71 (72)
T pfam10447 1 LPKVGDIVLARVTRVTPRQAYCEILAVGGTALKETFKGIIRKQDVRATEKDRVKIYECFRPGDIVRAKVIS 71 (72)
T ss_pred CCCCCCEEEEEEEEECHHEEEEEEEEECCEECCCCEEEEEEHHHCCCCCCCEEEHHHCCCCCCEEEEEEEE
T ss_conf 99899999999999750157999999999987885558989476665641018384683999899999962