HHsearch alignment for GI: 254780784 and conserved domain: smart00316
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.83 E-value=2.3e-08 Score=86.77 Aligned_cols=71 Identities=44% Similarity=0.720 Sum_probs=67.8
Q ss_pred CCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCC-CCEEEEEE
Q ss_conf 468678999999941536998287971048866314445478556032598899999978689-98666873
Q gi|254780784|r 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688 (699)
Q Consensus 618 e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~~-g~i~lSrk 688 (699)
T Consensus 1 ~~G~iv~g~V~~v~~~g~~v~i~~~~~g~l~~~~l~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~k 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCHHHEECCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf 999899999999978739999769989999807505555478468363898999999999999999999859