RPSBLAST alignment for GI: 254780784 and conserved domain: cd02394
>gnl|CDD|29004 cd02394, vigilin_like_KH, K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.. Length = 62
Score = 39.4 bits (92), Expect = 0.003
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI----DDDGTVKIASSSLAEIEAARE 608
E + IP R +IG G IR I+E+TG K+ T+ I + +E A+E
Sbjct: 1 TEEVEIPKKLHRFIIGKKGSNIRKIMEETGVKIRFPDPGSKSDTITI-TGPKENVEKAKE 59
Query: 609 MIR 611
I
Sbjct: 60 EIL 62