RPSBLAST alignment for GI: 254780784 and conserved domain: COG1185

>gnl|CDD|31378 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]. Length = 692
 Score =  886 bits (2292), Expect = 0.0
 Identities = 380/694 (54%), Positives = 507/694 (73%), Gaps = 4/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     IEW GR L LETG+IARQ++GAVL  YG+TVVLATVV  +  K+GQDFFPLT
Sbjct: 1   MFNKIVKTIEWGGRTLTLETGKIARQANGAVLVRYGDTVVLATVVASK-PKEGQDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+TYA GKIPGG+ +RE RP+E EIL SR+IDR IRPLF K ++NE Q++  V+  
Sbjct: 60  VNYEEKTYAAGKIPGGFFKREGRPSEKEILTSRLIDRPIRPLFPKGFRNEVQIVNTVLSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +++MV ASAAL LSG+PF GP+   +V YI+G +VLNP L+E ++  LDL V+
Sbjct: 120 DPENDPDILAMVGASAALSLSGIPFLGPIGAVRVGYIDGIFVLNPTLEELEESKLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+DAV MVE EA++L E+V+L+A+ FGH   + VI A  +LA    K+   ++      
Sbjct: 180 GTKDAVNMVESEADELDEEVMLEAVEFGHEAIQSVINAQEELALEVGKKKWELEPPSLDE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +LE ++  + +++L+ +  I EK  R   +D +K+K+    S E  S +  EI ++ E +
Sbjct: 240 ELEAKVRDLAEDELKEAVGIREKQERSAALDAIKEKIEEELSGEEES-SLKEIKAILEKL 298

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K VR ++L+ KVR+DGR  + VR I  +VG+L RTHGS+LF RG+TQA+VVVTLGT  
Sbjct: 299 EKKPVRRLILEGKVRIDGRFGDEVRPIGIEVGVLPRTHGSALFTRGETQALVVVTLGTPR 358

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G  +  F++HYNF P + GE  RMG+P RREIGHG LA RA+ PVLP   +
Sbjct: 359 DAQVIDILEGEYKKRFLLHYNFPPFSVGETGRMGSPGRREIGHGALAERALAPVLPSEEE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ES+GSSSMA+VCG SLALMDAGVPI  PVAGIAMGL+K+GD + +LSD
Sbjct: 419 FPYTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGLIKEGDKYAVLSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD GITA+QMD+KI GI++ IM  AL+QAK  RLHIL  M++ 
Sbjct: 479 ILGDEDHLGDMDFKVAGTDDGITALQMDIKIKGITKEIMKKALEQAKGARLHILIVMNEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE R +L  + PR+E + I PD+IR+VIG GGK I+ I E+TG K++I+DDGTVKIA+S
Sbjct: 539 ISEPRKELSPYAPRIETIKIDPDKIRDVIGPGGKTIKAITEETGVKIDIEDDGTVKIAAS 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A+E I +IT   EV ++Y+G VV+++DFGAFV     +DGLVHISQL+ ERV 
Sbjct: 599 DGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVE 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           K  DV+KEGD V VK+++ D +G+I+LS+K V +
Sbjct: 659 KVEDVLKEGDEVKVKVIEIDKQGRIRLSIKAVLE 692