RPSBLAST alignment for GI: 254780784 and conserved domain: COG2123

>gnl|CDD|32306 COG2123, COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis]. Length = 272

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 46/264 (17%), Positives = 96/264 (36%), Gaps = 40/264 (15%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L K +R+DGR  +  R +  + G++ + +GS+L   G+TQ +V V       E + D+  
Sbjct: 19  LKKGIRIDGRSFDEFRPLEIETGVIPKANGSALVKLGNTQVVVGVKAEI--GEPFPDT-- 74

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL--------PQTAQF 419
                  +++    P A       G P    I   R+  R +             +  + 
Sbjct: 75  -PNEGVLVVNVELSPLA-SPSFEPGPPDELAIELSRVVDRGLRESKAIDLEKLCIEEGKK 132

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP----------------------ISK 457
            + + +   + + DG+   A    +  AL++  VP                      +S 
Sbjct: 133 VWVVFVDVHVLDYDGNLIDAASLAAVAALLNTRVPKAVEVGDGEIVIEVEEEPVPLPVSN 192

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           P   +    + +    +++ D S +E+ +      +   + G       +  G I+E+ +
Sbjct: 193 PPISVTFAKIGN----VLVVDPSLEEELVADGRLTITVNEDGEIVAIQKVGGGSITESDL 248

Query: 518 VMALQQAKRGRLHILNEMSKVLSE 541
             AL+ A      +   + + L E
Sbjct: 249 EKALKTALSKAEKLREALKEALKE 272