HHsearch alignment for GI: 254780785 and conserved domain: cd00353
>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.
Probab=99.98 E-value=2.8e-32 Score=199.31 Aligned_cols=80 Identities=56% Similarity=0.827 Sum_probs=78.5
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 99999999545888788899999997799999999999778413527789999997899999998409999999999836
Q gi|254780785|r 7 RKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQSLK 86 (89)
Q Consensus 7 ~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~Lg 86 (89)
T Consensus 1 ~k~~ii~~~~~~~~DtGS~evQia~LT~rI~~L~~Hl~~~kkD~~skrgL~~lv~kRrrLL~YLkr~d~~~y~~~i~~Lg 80 (80)
T cd00353 1 KKQEILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKYLKRKDRLRYEWLIEKLG 80 (80)
T ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf 97899998779999878799999999999999999998877621789999999999999999998668999999999829