HHsearch alignment for GI: 254780785 and conserved domain: cd00677
>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=99.41 E-value=2.1e-13 Score=95.01 Aligned_cols=46 Identities=59% Similarity=0.757 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997799999999999778413527789999997899999998
Q gi|254780785|r 26 EVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLE 71 (89)
Q Consensus 26 evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk 71 (89)
T Consensus 1 ~vqia~lt~rI~~L~~h~~~~~kD~~~kr~L~~~v~kr~~Ll~ylk 46 (46)
T cd00677 1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46 (46)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9103579999999999998779963018779999999999987719