HHsearch alignment for GI: 254780785 and conserved domain: cd00677

>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=99.41  E-value=2.1e-13  Score=95.01  Aligned_cols=46  Identities=59%  Similarity=0.757  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999997799999999999778413527789999997899999998
Q gi|254780785|r   26 EVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLE   71 (89)
Q Consensus        26 evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk   71 (89)
T Consensus         1 ~vqia~lt~rI~~L~~h~~~~~kD~~~kr~L~~~v~kr~~Ll~ylk   46 (46)
T cd00677           1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK   46 (46)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             9103579999999999998779963018779999999999987719