Query gi|254780785|ref|YP_003065198.1| 30S ribosomal protein S15 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 89 No_of_seqs 106 out of 1519 Neff 5.0 Searched_HMMs 13730 Date Wed Jun 1 06:56:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780785.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1vs5o1 a.16.1.2 (O:1-88) Ribo 100.0 1.3E-37 9.3E-42 226.3 11.7 88 2-89 1-88 (88) 2 d1a32a_ a.16.1.2 (A:) Ribosoma 100.0 4.8E-36 3.5E-40 217.6 12.0 85 3-87 1-85 (85) 3 d1kuqa_ a.16.1.2 (A:) Ribosoma 100.0 1.2E-35 8.4E-40 215.4 10.2 83 5-87 2-84 (84) 4 d2nr5a1 a.25.6.1 (A:1-64) Hypo 43.0 11 0.00079 16.7 3.4 37 7-43 20-57 (64) 5 d1vmga_ a.204.1.2 (A:) Hypothe 38.5 11 0.00077 16.8 2.7 49 1-49 1-49 (83) 6 d1rh2a_ a.26.1.3 (A:) Interfer 13.5 41 0.003 13.5 6.6 83 6-88 53-143 (154) 7 d2hjqa1 a.140.3.2 (A:50-103) H 11.2 49 0.0036 13.1 4.4 35 3-37 16-50 (54) 8 d1sxjd1 a.80.1.1 (D:263-353) R 11.1 49 0.0036 13.1 2.6 36 3-38 52-90 (91) 9 d1xmka1 a.4.5.19 (A:294-366) Z 7.1 73 0.0053 12.1 1.3 23 65-87 9-31 (73) 10 d2d6fc2 d.74.4.1 (C:271-395) G 6.2 82 0.006 11.9 2.4 20 3-22 77-96 (125) No 1 >d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=1.3e-37 Score=226.25 Aligned_cols=88 Identities=48% Similarity=0.728 Sum_probs=87.1 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 88889999999995458887888999999977999999999997784135277899999978999999984099999999 Q gi|254780785|r 2 SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRL 81 (89) Q Consensus 2 ~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~ 81 (89) |+++++|+++|++||+||+||||||||||+||+||.+|++||+.||||++|+|||.+||++|++||+||+++|+++|.++ T Consensus 1 ~l~~~~k~~ii~~~~~~~~DtGS~evQiA~lT~rI~~Lt~Hl~~~kKD~~s~rgL~~lv~kRkklL~YL~~~d~~~Y~~v 80 (88) T d1vs5o1 1 SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTRL 80 (88) T ss_dssp CCCHHHHHHHHHHHCSSSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCCCTTHHHHHHHHHHHHHHHHHHHTTCHHHHHHH T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 98779999999998689998788579898779999999999987665410399999999999999999986599999999 Q ss_pred HHHHCCCC Q ss_conf 99836899 Q gi|254780785|r 82 VQSLKLRR 89 (89) Q Consensus 82 i~~LglRk 89 (89) |++||||| T Consensus 81 i~~LgLrk 88 (88) T d1vs5o1 81 IERLGLRR 88 (88) T ss_dssp HTTTTCCC T ss_pred HHHHCCCC T ss_conf 99958999 No 2 >d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]} Probab=100.00 E-value=4.8e-36 Score=217.58 Aligned_cols=85 Identities=49% Similarity=0.800 Sum_probs=84.0 Q ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 88899999999954588878889999999779999999999977841352778999999789999999840999999999 Q gi|254780785|r 3 ITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLV 82 (89) Q Consensus 3 ~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i 82 (89) |++++|+++|++||+||+||||||||||+||+||++|++||+.||||++|+|||..||++|+++|+||+++|+++|.++| T Consensus 1 ~~~~~K~~~i~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~srrgL~~lv~~RrklL~YLrk~d~~~Y~~~i 80 (85) T d1a32a_ 1 LTQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIV 80 (85) T ss_dssp CCHHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf 98899999999976899987997998986189899999999877553224899999999999999999865999999999 Q ss_pred HHHCC Q ss_conf 98368 Q gi|254780785|r 83 QSLKL 87 (89) Q Consensus 83 ~~Lgl 87 (89) ++||| T Consensus 81 ~~Lgl 85 (85) T d1a32a_ 81 EKLGL 85 (85) T ss_dssp HHHTC T ss_pred HHCCC T ss_conf 88488 No 3 >d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=1.2e-35 Score=215.45 Aligned_cols=83 Identities=48% Similarity=0.735 Sum_probs=81.8 Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 89999999995458887888999999977999999999997784135277899999978999999984099999999998 Q gi|254780785|r 5 LERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQS 84 (89) Q Consensus 5 ~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~ 84 (89) +++|+++|++||+||+||||||||||+||+||.+|++||+.||||++|+|||.+||++|++||+||+++|+++|.++|++ T Consensus 2 k~~K~~ii~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~s~rgL~~lv~kRkklL~YLrk~d~~~Y~~li~~ 81 (84) T d1kuqa_ 2 KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEK 81 (84) T ss_dssp TTHHHHHHHHHCSSTTCCSSHHHHHHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT T ss_pred CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 17999999997689999898899999889999999999987765410399999999999999999986699999999988 Q ss_pred HCC Q ss_conf 368 Q gi|254780785|r 85 LKL 87 (89) Q Consensus 85 Lgl 87 (89) ||| T Consensus 82 LgL 84 (84) T d1kuqa_ 82 LGI 84 (84) T ss_dssp TCC T ss_pred CCC T ss_conf 388 No 4 >d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]} Probab=43.04 E-value=11 Score=16.73 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=25.9 Q ss_pred HHHHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHH Q ss_conf 9999999954588878889999-999779999999999 Q gi|254780785|r 7 RKRELMKEYAVSPGDTGSPEVQ-VAVCTERIANLTEHF 43 (89) Q Consensus 7 ~k~~~i~~f~~~~~DtGS~evQ-IA~lT~rI~~L~~Hl 43 (89) -|-..|......+....|+..| +.+.|.||..|.+-+ T Consensus 20 gklkairqlcgaedssdssdmqeveiwtnrikeledwl 57 (64) T d2nr5a1 20 GKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWL 57 (64) T ss_dssp HHHHHHHHTTTTTCC----HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 88999999957766775103489999998899999986 No 5 >d1vmga_ a.204.1.2 (A:) Hypothetical protein SSo12199 (SSo3215) {Sulfolobus solfataricus [TaxId: 2287]} Probab=38.50 E-value=11 Score=16.78 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=36.4 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9888899999999954588878889999999779999999999977841 Q gi|254780785|r 1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKD 49 (89) Q Consensus 1 m~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD 49 (89) |.++-..-|+-|++|.....---+|+.+..-|++.+.-|.+++....++ T Consensus 1 ~~M~l~elQ~~v~~~~~~~d~~~~~~~~~~~l~eE~gEl~~a~~~~~~~ 49 (83) T d1vmga_ 1 MDLELKELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALLSNNLD 49 (83) T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTCHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 9785999999999999865153389999999999999999999818989 No 6 >d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]} Probab=13.51 E-value=41 Score=13.51 Aligned_cols=83 Identities=7% Similarity=0.056 Sum_probs=50.1 Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCC-CHH-HHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 9999999995458887888999999977999999999997------78413-527-789999997899999998409999 Q gi|254780785|r 6 ERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKS------AKKDV-NSK-IGLGRLISLRSSLLKYLERKDVER 77 (89) Q Consensus 6 ~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~------~kKD~-~s~-rgL~~lv~kRkklL~YLk~~d~~~ 77 (89) +--++++.-|..+..-+|=-+-.+--+=..+..-.+|++. ..++. ... ...+.+-.-=+++..||+.+++.. T Consensus 53 emlqqif~LF~~~~ssa~Wnet~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~~~e~~~L~lk~YF~rI~~yLk~K~yS~ 132 (154) T d1rh2a_ 53 EMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMNEDSILAVRKYFQRITLYLKEKKYSP 132 (154) T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH T ss_conf 99999999980688601067999999999999999999999988556446776777524899999999999987189978 Q ss_pred HHHHHHHHCCC Q ss_conf 99999983689 Q gi|254780785|r 78 YKRLVQSLKLR 88 (89) Q Consensus 78 Y~~~i~~LglR 88 (89) +.|-+-..-|+ T Consensus 133 CAWEiVR~Ei~ 143 (154) T d1rh2a_ 133 CAWEVVRAEIM 143 (154) T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 7 >d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]} Probab=11.20 E-value=49 Score=13.10 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=27.9 Q ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 88899999999954588878889999999779999 Q gi|254780785|r 3 ITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIA 37 (89) Q Consensus 3 ~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~ 37 (89) +.+.....+|...+++|.|.-...-.||..-+.|. T Consensus 16 m~k~~~e~ii~~lg~~ps~fkn~~eria~il~qid 50 (54) T d2hjqa1 16 MNKAEHESIISNLGRNPSDFKNADERIAYILKQID 50 (54) T ss_dssp CCHHHHHHHHHHHTCCTTSCCSHHHHHHHHHHHHT T ss_pred CCCCCCHHHHHHCCCCHHHHCCHHHHHHHHHHHHH T ss_conf 12111145787528994561276899999999861 No 8 >d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=11.13 E-value=49 Score=13.08 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=21.3 Q ss_pred CCHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHH Q ss_conf 8889999999995458---88788899999997799999 Q gi|254780785|r 3 ITLERKRELMKEYAVS---PGDTGSPEVQVAVCTERIAN 38 (89) Q Consensus 3 ~~~~~k~~~i~~f~~~---~~DtGS~evQIA~lT~rI~~ 38 (89) ++...|.+++..++.- =.|-++..+|+.-|..+|.. T Consensus 52 i~~~~k~~i~~~la~~d~rL~~G~~e~lQL~~lla~i~~ 90 (91) T d1sxjd1 52 FDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 90 (91) T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC T ss_conf 999999999999999999998489839999999999871 No 9 >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} Probab=7.07 E-value=73 Score=12.14 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=8.0 Q ss_pred HHHHHHHHCCHHHHHHHHHHHCC Q ss_conf 99999984099999999998368 Q gi|254780785|r 65 SLLKYLERKDVERYKRLVQSLKL 87 (89) Q Consensus 65 klL~YLk~~d~~~Y~~~i~~Lgl 87 (89) +.+.||+......=..+.+.||+ T Consensus 9 kI~~~L~~~g~~~Al~iak~lGl 31 (73) T d1xmka1 9 KICDYLFNVSDSSALNLAKNIGL 31 (73) T ss_dssp HHHHHHHHTCCEEHHHHHHHHCG T ss_pred HHHHHHHHCCCCHHHHHHHHHCC T ss_conf 99999997598439999999499 No 10 >d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=6.16 E-value=82 Score=11.86 Aligned_cols=20 Identities=40% Similarity=0.436 Sum_probs=16.9 Q ss_pred CCHHHHHHHHHHHCCCCCCC Q ss_conf 88899999999954588878 Q gi|254780785|r 3 ITLERKRELMKEYAVSPGDT 22 (89) Q Consensus 3 ~~~~~k~~~i~~f~~~~~Dt 22 (89) ++.+..+++++.++..|+|+ T Consensus 77 l~~e~~~~i~~~~~~~~GD~ 96 (125) T d2d6fc2 77 ITEEEVRGLRDAVGASQGDA 96 (125) T ss_dssp CCHHHHHHHHHHTTCCSSSE T ss_pred CCHHHHHHHHHHHCCCCCCE T ss_conf 33899999999948999998 Done!