RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780785|ref|YP_003065198.1| 30S ribosomal protein S15 [Candidatus Liberibacter asiaticus str. psy62] (89 letters) >2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (O:) Length = 89 Score = 103 bits (258), Expect = 1e-23 Identities = 44/88 (50%), Positives = 62/88 (70%) Query: 1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60 M IT E K+++++E+A PGDTGS EVQVA+ T RI L+EH K KKD +S GL ++ Sbjct: 1 MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMV 60 Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLR 88 R LL+YL+R+D ERY+ L++ L +R Sbjct: 61 GQRRRLLRYLQREDPERYRALIEKLGIR 88 >3i1m_O 30S ribosomal protein S15; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* 2qou_O* 2qow_O* 2qoy_O* 2qp0_O* 2vaz_F 2z4k_O* 2z4m_O* 2qal_O 3i1o_O 3i1q_O 3i1s_O 3i1z_O 3i21_O ... (O:) Length = 89 Score = 102 bits (256), Expect = 2e-23 Identities = 42/89 (47%), Positives = 59/89 (66%) Query: 1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60 MS++ E +++ E+ DTGS EVQVA+ T +I +L HF KKD +S+ GL R++ Sbjct: 1 MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMV 60 Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89 S R LL YL+RKDV RY +L++ L LRR Sbjct: 61 SQRRKLLDYLKRKDVARYTQLIERLGLRR 89 >3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (O:) Length = 90 Score = 91.4 bits (227), Expect = 4e-20 Identities = 27/83 (32%), Positives = 40/83 (48%) Query: 6 ERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSS 65 + + + GS E QV T +I LT H + KKD +S+ GL + + R Sbjct: 3 KNSFISVISDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQR 62 Query: 66 LLKYLERKDVERYKRLVQSLKLR 88 LL YL + + RYK L+ L +R Sbjct: 63 LLAYLLKINGVRYKELISKLNIR 85 >1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Bacillus stearothermophilus} (A:20-88) Length = 69 Score = 85.1 bits (211), Expect = 3e-18 Identities = 37/69 (53%), Positives = 49/69 (71%) Query: 21 DTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKR 80 DTGSPEVQ+A+ TE+I NL EH + KKD +S+ GL +++ R LL YL KDV RY+ Sbjct: 1 DTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYRE 60 Query: 81 LVQSLKLRR 89 +V+ L LRR Sbjct: 61 IVEKLGLRR 69 >3jyv_O 40S ribosomal protein S13; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1ysh_E 1s1h_O (O:) Length = 84 Score = 77.1 bits (190), Expect = 7e-16 Identities = 11/66 (16%), Positives = 24/66 (36%) Query: 10 ELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKY 69 + S G + ++ ++ +H + +KD ++K L + S L +Y Sbjct: 4 NKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARY 63 Query: 70 LERKDV 75 V Sbjct: 64 YRTVAV 69 >3h12_A Mandelate racemase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium nysgxrc; 1.50A {Bordetella bronchiseptica} (A:131-348) Length = 218 Score = 27.9 bits (61), Expect = 0.49 Identities = 5/37 (13%), Positives = 10/37 (27%) Query: 8 KRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFK 44 ++ YA S +P+ + K Sbjct: 5 HTRGVRAYASSIYWDLTPDQAADELAGWVEQGFTAAK 41 >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A (A:126-371) Length = 246 Score = 27.6 bits (60), Expect = 0.68 Identities = 4/39 (10%), Positives = 7/39 (17%) Query: 8 KRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSA 46 ++ YA +A K Sbjct: 5 YDPVVPVYAGGIDLELPVADLKTQADRFLAGGFRAIKXK 43 >2hai_A Hepatitis C virus NS5B RNA polymerase; HCV RNA polymerase, transferase; HET: CME PFI; 1.58A {Hepatitis c virus} PDB: 1os5_A* 3frz_A* 2d3z_A* 2d3u_A* 2d41_A* 2gc8_A* 1quv_A* 2qe2_A* 2qe5_A* 3e51_A* 3bsa_A* 3bsc_A* 3br9_A* 3co9_A* 3cvk_A* 3cwj_A* 3d28_A* 3d5m_A* 3cde_A* 2zku_A ... (A:1-357) Length = 357 Score = 24.2 bits (52), Expect = 7.2 Identities = 8/17 (47%), Positives = 9/17 (52%) Query: 10 ELMKEYAVSPGDTGSPE 26 E M Y+ PGD PE Sbjct: 341 EAMTRYSAPPGDPPQPE 357 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.132 0.348 Gapped Lambda K H 0.267 0.0676 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 608,624 Number of extensions: 21720 Number of successful extensions: 84 Number of sequences better than 10.0: 1 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 10 Length of query: 89 Length of database: 4,956,049 Length adjustment: 51 Effective length of query: 38 Effective length of database: 3,231,994 Effective search space: 122815772 Effective search space used: 122815772 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.1 bits)