BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780785|ref|YP_003065198.1| 30S ribosomal protein S15
[Candidatus Liberibacter asiaticus str. psy62]
(89 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780785|ref|YP_003065198.1| 30S ribosomal protein S15 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 89
Score = 178 bits (451), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI
Sbjct: 1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
SLRSSLLKYLERKDVERYKRLVQSLKLRR
Sbjct: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
>gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 25.4 bits (54), Expect = 0.21, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 9 RELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAK 47
RE M E G P QVA+ ERIA E+F K
Sbjct: 319 RETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERK 357
>gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 189
Score = 24.6 bits (52), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 31 VCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLK 68
+C +RI + F + KK +++I G+L LR+ L+K
Sbjct: 24 MCIDRIHSF-HFFPAWKKKFHAEISEGQLDGLRTILIK 60
>gi|254780218|ref|YP_003064631.1| thymidylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 225
Score = 23.9 bits (50), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 49 DVNSKIGLGRL---ISLR-SSLLKYLERKDV 75
D+ IGL R+ SLR S+ L Y ERKDV
Sbjct: 137 DLPVDIGLKRVQNRYSLRESACLDYFERKDV 167
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 21.2 bits (43), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 13 KEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSA 46
K Y + P E ER +L EHF S+
Sbjct: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
Length = 471
Score = 20.8 bits (42), Expect = 4.8, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 68 KYLERKDVERYKRLVQSL 85
K L R +E YK +QSL
Sbjct: 426 KMLTRSRIEEYKNKLQSL 443
>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 424
Score = 20.4 bits (41), Expect = 5.8, Method: Composition-based stats.
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 23 GSPEVQVAVCTE 34
GSP ++V VC E
Sbjct: 16 GSPTIEVDVCLE 27
>537021.9.peg.410_1
Length = 952
Score = 20.4 bits (41), Expect = 6.5, Method: Composition-based stats.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 64 SSLLKYLERKDVERYKRLV 82
S L+K+L++ E Y RL+
Sbjct: 633 SDLIKHLKKSTQEEYNRLL 651
>gi|254780259|ref|YP_003064672.1| 50S ribosomal protein L23 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 110
Score = 19.6 bits (39), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 62 LRSSLLKYLERKDVER 77
+RSS Y+ RKDV+R
Sbjct: 78 VRSSRDMYVSRKDVKR 93
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 19.6 bits (39), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 6/14 (42%), Positives = 13/14 (92%)
Query: 61 SLRSSLLKYLERKD 74
S+R+ +++Y+ER+D
Sbjct: 112 SVRARIVEYIERED 125
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.132 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,139
Number of Sequences: 1233
Number of extensions: 1639
Number of successful extensions: 12
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 89
length of database: 328,796
effective HSP length: 57
effective length of query: 32
effective length of database: 258,515
effective search space: 8272480
effective search space used: 8272480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)