HHsearch alignment for GI: 254780786 and conserved domain: COG0858
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis].
Probab=99.97 E-value=1.5e-30 Score=192.80 Aligned_cols=112 Identities=35% Similarity=0.508 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECC-CC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 73899999999999999995141342012651689888898587565599998279-86-47789999998568999999
Q gi|254780786|r 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV-SPDRVISALNCNIKFIRGRI 86 (128)
Q Consensus 9 s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~-~~-~~~~~~~~L~~~~~~ir~~l 86 (128)
T Consensus 4 ~~R~~rv~e~i~~~l~~il~~-eikDprl~~--~~Vt~V~vS~Dl~~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l 80 (118)
T COG0858 4 STRAKRVAEQIQKELAEILQR-EIKDPRLGL--VTVTDVEVSKDLSHAKVYVTVLGDEESSKAEILAALNKAKGFIRSEL 80 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HCCCCCCCC--EEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 278899999999999999998-754977686--68889998799755899996267742228999999999699999999
Q ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHH
Q ss_conf 99875214578589997386888999999855767777
Q gi|254780786|r 87 GRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124 (128)
Q Consensus 87 ~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v~~ 124 (128)
T Consensus 81 ~~~~~-lr~~PeL~F~~D~s~~~~~ki~~Ll~~l~~~~ 117 (118)
T COG0858 81 GKRLR-LRKTPELHFVYDDSIENGNKIDALLNDLKKAD 117 (118)
T ss_pred HHHCC-EEECCEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 98577-57687689996764204788999998755248