HHsearch alignment of GI: 254780786 and MMDB domain: 1pa4_A_
>1pa4_A (A:) Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae}
Probab=99.96 E-value=1.5e-30 Score=192.52 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 77738999999999999999951413420126516898888985875655999982798647789999998568999999
Q gi|254780786|r 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86 (128)
Q Consensus 7 ~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~L~~~~~~ir~~l 86 (128)
++|.|+.|++++|+++||++|.+ ++.||++. +||||+|++|+|+++|+|||+++|+.+.+.++++|++++|+||+.|
T Consensus 1 M~s~R~~r~~~~i~~~is~il~~-~i~d~~~~--~itIt~V~vs~D~~~a~Vy~s~~~~~~~~~~~~~L~~~~~~iR~~l 77 (116)
T 1pa4_A 1 MASYKKERLENDIIRLINRTVIH-EIYNETVK--TGHVTHVKLSDDLLHVTVYLDCYNREQIDRVVGAFNQAKGVFSRVL 77 (116)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-CSSSSCHH--HHCCSCCEEETTTTEEEECCCCSSSSSHHHHHHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98578999999999999999997-56486768--3588799989997668999984672037999999999899999999
Q ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHH
Q ss_conf 99875214578589997386888999999855767777
Q gi|254780786|r 87 GRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124 (128)
Q Consensus 87 ~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v~~ 124 (128)
|+++ .||++|+|+|++|++++++.+|++||++.+.++
T Consensus 78 ~~~l-~lr~~P~L~F~~D~~~e~~~~i~~lL~~~~~~~ 114 (116)
T 1pa4_A 78 AHNL-YLAKAVQIHFVKDKAIDNAMRIESIINSLKKSK 114 (116)
T ss_dssp HTTC-CCGGGCCCEECSSSTTSSCC-------------
T ss_pred HHHC-CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 9676-884498789997897789999999999987458