HHsearch results for GI: 254780786 and protein with PDBid: 1jos_A
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=99.97 E-value=1e-31 Score=198.16 Aligned_cols=115 Identities=26% Similarity=0.472 Sum_probs=104.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCH---HHHHHHHHHHHHH
Q ss_conf 8777738999999999999999951413420126516898888985875655999982798647---7899999985689
Q gi|254780786|r 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP---DRVISALNCNIKF 81 (128)
Q Consensus 5 ~~~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~---~~~~~~L~~~~~~ 81 (128)
|+++++|+.||+++||++||++|.+ ++.||+++ +||||+|++|+||++|+||||++|+.++ +.++++|++++|+
T Consensus 1 M~~~~~R~~Rv~~~i~~~is~~l~~-~i~d~~l~--~vtIt~V~~S~Dl~~AkVy~s~~~~~~~~~~~~~~~~L~~~~~~ 77 (128)
T 1jos_A 1 MAREFKRSDRVAQEIQKEIAVILQR-EVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPY 77 (128)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH-HCCCTTTC--CEEEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9898707899999999999999998-56686668--34885999889866389999846871067799999999998999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHH
Q ss_conf 999999987521457858999738688899999985576777
Q gi|254780786|r 82 IRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123 (128)
Q Consensus 82 ir~~l~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v~ 123 (128)
||+.||+++ +|||+|+|+|++|++++++.+|++||++..-+
T Consensus 78 ir~~l~~~l-~lr~~P~L~F~~D~s~e~~~~I~~lL~~i~~~ 118 (128)
T 1jos_A 78 IRSLLGKAM-RLRIVPEIRFIYDQSLVEGMRMSNLVTNVVRE 118 (128)
T ss_dssp HHHHHHHHH-CCSSCCEEEEEECCCCCCCC------------
T ss_pred HHHHHHHHC-CCEECCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 999999667-88079878999789778999999999998887