HHsearch results for GI: 254780786 and protein with PDBid: 1jos_A

>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=99.97  E-value=1e-31  Score=198.16  Aligned_cols=115  Identities=26%  Similarity=0.472  Sum_probs=104.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCH---HHHHHHHHHHHHH
Q ss_conf             8777738999999999999999951413420126516898888985875655999982798647---7899999985689
Q gi|254780786|r    5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP---DRVISALNCNIKF   81 (128)
Q Consensus         5 ~~~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~---~~~~~~L~~~~~~   81 (128)
                      |+++++|+.||+++||++||++|.+ ++.||+++  +||||+|++|+||++|+||||++|+.++   +.++++|++++|+
T Consensus         1 M~~~~~R~~Rv~~~i~~~is~~l~~-~i~d~~l~--~vtIt~V~~S~Dl~~AkVy~s~~~~~~~~~~~~~~~~L~~~~~~   77 (128)
T 1jos_A            1 MAREFKRSDRVAQEIQKEIAVILQR-EVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPY   77 (128)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHH-HCCCTTTC--CEEEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHHHHHHTHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9898707899999999999999998-56686668--34885999889866389999846871067799999999998999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHH
Q ss_conf             999999987521457858999738688899999985576777
Q gi|254780786|r   82 IRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP  123 (128)
Q Consensus        82 ir~~l~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v~  123 (128)
                      ||+.||+++ +|||+|+|+|++|++++++.+|++||++..-+
T Consensus        78 ir~~l~~~l-~lr~~P~L~F~~D~s~e~~~~I~~lL~~i~~~  118 (128)
T 1jos_A           78 IRSLLGKAM-RLRIVPEIRFIYDQSLVEGMRMSNLVTNVVRE  118 (128)
T ss_dssp             HHHHHHHHH-CCSSCCEEEEEECCCCCCCC------------
T ss_pred             HHHHHHHHC-CCEECCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             999999667-88079878999789778999999999998887