HHsearch results for GI: 254780786 and protein with PDBid: 1pa4_A
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=99.96 E-value=1.4e-31 Score=197.47 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 77738999999999999999951413420126516898888985875655999982798647789999998568999999
Q gi|254780786|r 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86 (128)
Q Consensus 7 ~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~L~~~~~~ir~~l 86 (128)
++|.|+.|++++|+++||++|++ ++.||++. +||||+|++|+||++|+||||++++.+.++++++|++++|+||++|
T Consensus 1 M~~~R~~rv~~~i~~~is~il~~-~~~d~~l~--~vtIt~V~vS~Dl~~AkVy~s~~~~~~~~~~~~~L~~~~~~ir~~l 77 (116)
T 1pa4_A 1 MASYKKERLENDIIRLINRTVIH-EIYNETVK--TGHVTHVKLSDDLLHVTVYLDCYNREQIDRVVGAFNQAKGVFSRVL 77 (116)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-CSSSSCHH--HHCCSCCEEETTTTEEEECCCCSSSSSHHHHHHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98578999999999999999997-56486768--3588799989997668999984672037999999999899999999
Q ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHH
Q ss_conf 99875214578589997386888999999855767777
Q gi|254780786|r 87 GRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124 (128)
Q Consensus 87 ~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v~~ 124 (128)
|+++. +||+|+|+|++|++++++.+|++||++++-.+
T Consensus 78 ~~~l~-lr~~P~L~F~~D~s~e~~~~I~~ll~~~~~~~ 114 (116)
T 1pa4_A 78 AHNLY-LAKAVQIHFVKDKAIDNAMRIESIINSLKKSK 114 (116)
T ss_dssp HTTCC-CGGGCCCEECSSSTTSSCC-------------
T ss_pred HHHCC-CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 96768-84498789997897789999999999987458