HHSEARCH alignment of GI: 254780786 and SCOP domain: d2dyja1

Alignment
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]}
Probab=99.90  E-value=1.4e-23  Score=150.98  Aligned_cols=89  Identities=19%  Similarity=0.272  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999995141342012651689888898587565599998279864778999999856899999999875
Q gi|254780786|r   12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR   91 (128)
Q Consensus        12 ~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~L~~~~~~ir~~l~~~l~   91 (128)
                      ..|++++|+++||++|.  ++.||+++  +||||+|++|+|+++|+||||++++  .++++++||+++|+||+++++.+ 
T Consensus         2 k~rle~~i~r~is~il~--~~~d~~~~--~vtIt~V~~S~Dl~~akVyvs~~~~--~~~~~~~L~~~~~~ir~~l~~~l-   74 (91)
T d2dyja1           2 KAHLEAQLKRALAEEIQ--ALEDPRLF--LLTVEAVRLSKDGSVLSVYVEAFRE--EEGALRALSRAERRLVAALARRV-   74 (91)
T ss_dssp             HHHHHHHHHHHHHHHHH--TCCCGGGT--TCEEEEEEECTTSSEEEEEEECSSC--HHHHHHHHHHTHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHHHHHHH--HCCCCCCC--CEEEEEEEECCCCCCEEEEEEECCC--HHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf             37899999999999999--80686659--4599799988980037999996243--47899999998999999998567-


Q ss_pred             HCCCCCEEEEEECCCH
Q ss_conf             2145785899973868
Q gi|254780786|r   92 NLRYVPELRFRYDTSL  107 (128)
Q Consensus        92 ~lr~~P~L~F~~D~s~  107 (128)
                      ++|++|+|+|++|++.
T Consensus        75 ~~r~~P~L~F~~D~s~   90 (91)
T d2dyja1          75 RMRRLPRLEFLPWRAS   90 (91)
T ss_dssp             CCSSCCEEEEEEGGGC
T ss_pred             CCCCCCEEEEEECCCC
T ss_conf             9816987999968999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Ribosome-binding factor A, RbfA
family: Ribosome-binding factor A, RbfA
domain: Ribosome-binding factor A, RbfA
species: Thermus thermophilus [TaxId: 274]