BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780786|ref|YP_003065199.1| ribosome-binding factor A
[Candidatus Liberibacter asiaticus str. psy62]
         (128 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780786|ref|YP_003065199.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040463|gb|ACT57259.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 128

 Score =  256 bits (655), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI
Sbjct: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
           SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP
Sbjct: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120

Query: 121 KIPVALEK 128
           KIPVALEK
Sbjct: 121 KIPVALEK 128


>gi|315122008|ref|YP_004062497.1| ribosome-binding factor A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495410|gb|ADR52009.1| ribosome-binding factor A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 132

 Score =  199 bits (507), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 97/122 (79%), Positives = 108/122 (88%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKNK+   SRRALRVGEEVRSALMWVILNNEFQD LI RD+ISISEVCMSVDLRVATVY+
Sbjct: 1   MKNKSSVPSRRALRVGEEVRSALMWVILNNEFQDNLIHRDIISISEVCMSVDLRVATVYV 60

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
           SLP DVSPD VI AL CN KF+RGRI +SLRNL+Y+PELRFRYDTSLQ+YWK++ LMC  
Sbjct: 61  SLPPDVSPDVVIDALKCNNKFLRGRISQSLRNLKYIPELRFRYDTSLQNYWKIDTLMCSS 120

Query: 121 KI 122
           K+
Sbjct: 121 KV 122


>gi|222147150|ref|YP_002548107.1| ribosome-binding factor A [Agrobacterium vitis S4]
 gi|254789726|sp|B9JYK7|RBFA_AGRVS RecName: Full=Ribosome-binding factor A
 gi|221734140|gb|ACM35103.1| ribosome-binding factor A [Agrobacterium vitis S4]
          Length = 137

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 88/122 (72%), Gaps = 2/122 (1%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K  N   S+R LRVGE+VR+A+  V+   E +D LI + VISISEV MS DL+VAT Y+S
Sbjct: 3   KPTNSAPSQRMLRVGEQVRAAITQVLQRGEVRDDLIEKTVISISEVRMSTDLKVATAYVS 62

Query: 62  LPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
            PL VS  D VI+ALN + K+IRGRIG  LR ++Y+PE+RFR DTS  +Y K++AL+  P
Sbjct: 63  -PLGVSDHDTVIAALNRHAKYIRGRIGGQLRQMKYMPEVRFRDDTSFDNYQKIDALLRSP 121

Query: 121 KI 122
           ++
Sbjct: 122 EV 123


>gi|15887440|ref|NP_353121.1| ribosome-binding factor A [Agrobacterium tumefaciens str. C58]
 gi|22096033|sp|Q8UJ52|RBFA_AGRT5 RecName: Full=Ribosome-binding factor A
 gi|15154953|gb|AAK85906.1| ribosome-binding factor A [Agrobacterium tumefaciens str. C58]
          Length = 138

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+AL  ++   E +D LI   VISISEV MS DL++AT Y++ PL V+ 
Sbjct: 10  SQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVT-PLGVAD 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              +ISALN + KF+RGR+G  LR ++Y+PELRFR DTS  +Y K++AL+  P++
Sbjct: 69  HTDIISALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPEV 123


>gi|325291530|ref|YP_004277394.1| Ribosome-binding factor A [Agrobacterium sp. H13-3]
 gi|325059383|gb|ADY63074.1| Ribosome-binding factor A [Agrobacterium sp. H13-3]
          Length = 138

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 84/115 (73%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+AL  ++   E +D LI   VISISEV MS DL++AT Y++ PL V+ 
Sbjct: 10  SQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVT-PLGVAD 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              +I+ALN + KF+RGR+G  LR ++Y+PELRFR DTS  +Y K++AL+  P++
Sbjct: 69  HTDIITALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPEV 123


>gi|222084325|ref|YP_002542854.1| ribosome-binding factor A [Agrobacterium radiobacter K84]
 gi|221721773|gb|ACM24929.1| ribosome-binding factor A [Agrobacterium radiobacter K84]
          Length = 139

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 85/115 (73%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+A+  V+   E +D LI R VISISEV MS DL++AT +++ PL V+ 
Sbjct: 11  SQRMLRVGEQVRAAITQVLQRGEVRDDLIERTVISISEVRMSPDLKIATAFVT-PLGVAD 69

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            D +I  LN + K+IRGR+G+ LR ++Y+PE+RFR DTS  +Y K++AL+  P++
Sbjct: 70  HDLIIDTLNRHTKYIRGRLGQHLRQMKYMPEIRFRDDTSFDNYKKIDALLRSPEV 124


>gi|227824072|ref|YP_002828045.1| ribosome-binding factor A [Sinorhizobium fredii NGR234]
 gi|254789759|sp|C3MC67|RBFA_RHISN RecName: Full=Ribosome-binding factor A
 gi|227343074|gb|ACP27292.1| ribosome-binding factor A [Sinorhizobium fredii NGR234]
          Length = 135

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 84/115 (73%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+A+  V+   E +D LI + VISISEV MS DL++AT Y++ PL V+ 
Sbjct: 10  SQRMLRVGEQVRAAITQVLQRGEVRDPLIEKTVISISEVRMSPDLKIATAYVT-PLGVAD 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              VI ALN + KFIRGR+G  LR ++Y+P++RFR DTS  +Y K++AL+  P++
Sbjct: 69  HAAVIEALNKHAKFIRGRLGPQLRQMKYMPDVRFRDDTSFDNYQKIDALLRSPEV 123


>gi|239833214|ref|ZP_04681543.1| ribosome-binding factor A [Ochrobactrum intermedium LMG 3301]
 gi|239825481|gb|EEQ97049.1| ribosome-binding factor A [Ochrobactrum intermedium LMG 3301]
          Length = 171

 Score =  114 bits (284), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/125 (47%), Positives = 83/125 (66%), Gaps = 4/125 (3%)

Query: 2   KNKNPKNS----RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT 57
           ++ +PK S    +R LRVGE+VR AL  V+   E +D LI+R VIS+SEV MS DL++AT
Sbjct: 24  RSPDPKGSGGLSQRQLRVGEQVRHALAQVLQRGEIRDDLIARTVISVSEVRMSPDLKIAT 83

Query: 58  VYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +I+   D     VI AL  N KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+
Sbjct: 84  CFITPLGDADTQAVIKALAANAKFIRGRMAPSLSQMKYMPEFRFRADTSFDNFSKIDALL 143

Query: 118 CLPKI 122
             P++
Sbjct: 144 RSPEV 148


>gi|218682086|ref|ZP_03529687.1| ribosome-binding factor A [Rhizobium etli CIAT 894]
          Length = 134

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 83/115 (72%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++ PL VS 
Sbjct: 10  SQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              VI ALN + KFIRGR+G+ LR ++Y+PE+RFR DTS  +Y K++ L+  P++
Sbjct: 69  HSIVIGALNRHAKFIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123


>gi|17988247|ref|NP_540881.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
 gi|17984014|gb|AAL53145.1| ribosome-binding factor a [Brucella melitensis bv. 1 str. 16M]
          Length = 171

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 35  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 94

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 95  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEV 148


>gi|225853591|ref|YP_002733824.1| ribosome-binding factor A [Brucella melitensis ATCC 23457]
 gi|256045769|ref|ZP_05448647.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112489|ref|ZP_05453410.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
 gi|256264966|ref|ZP_05467498.1| ribosome-binding factor A [Brucella melitensis bv. 2 str. 63/9]
 gi|260563065|ref|ZP_05833551.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
 gi|265992186|ref|ZP_06104743.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993925|ref|ZP_06106482.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
 gi|20978585|sp|Q8YEB4|RBFA_BRUME RecName: Full=Ribosome-binding factor A
 gi|254789736|sp|C0RG48|RBFA_BRUMB RecName: Full=Ribosome-binding factor A
 gi|225641956|gb|ACO01870.1| ribosome-binding factor A [Brucella melitensis ATCC 23457]
 gi|260153081|gb|EEW88173.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
 gi|262764906|gb|EEZ10827.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
 gi|263003252|gb|EEZ15545.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095449|gb|EEZ19050.1| ribosome-binding factor A [Brucella melitensis bv. 2 str. 63/9]
          Length = 150

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 14  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 74  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEV 127


>gi|241207068|ref|YP_002978164.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860958|gb|ACS58625.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 134

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LR+GE+VR+AL  V+   E +D +I   VISISEV MS DL++AT Y++ PL VS 
Sbjct: 10  SQRMLRIGEQVRAALTQVLQRGEVRDEIIEATVISISEVRMSTDLKIATAYVT-PLGVSD 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              VI ALN + +FIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P++
Sbjct: 69  HSIVIKALNRHARFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123


>gi|326410164|gb|ADZ67229.1| ribosome-binding factor A [Brucella melitensis M28]
          Length = 192

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 56  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 115

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 116 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEV 169


>gi|326539882|gb|ADZ88097.1| ribosome-binding factor A [Brucella melitensis M5-90]
          Length = 197

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 61  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 120

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 121 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEV 174


>gi|86355775|ref|YP_467667.1| ribosome-binding factor A [Rhizobium etli CFN 42]
 gi|123513437|sp|Q2KDZ6|RBFA_RHIEC RecName: Full=Ribosome-binding factor A
 gi|86279877|gb|ABC88940.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
           CFN 42]
          Length = 136

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++ PL VS 
Sbjct: 10  SQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              VI ALN + KFIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P++
Sbjct: 69  HSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123


>gi|254713434|ref|ZP_05175245.1| ribosome-binding factor A [Brucella ceti M644/93/1]
 gi|254716209|ref|ZP_05178020.1| ribosome-binding factor A [Brucella ceti M13/05/1]
 gi|261217983|ref|ZP_05932264.1| ribosome-binding factor A [Brucella ceti M13/05/1]
 gi|261321167|ref|ZP_05960364.1| ribosome-binding factor A [Brucella ceti M644/93/1]
 gi|260923072|gb|EEX89640.1| ribosome-binding factor A [Brucella ceti M13/05/1]
 gi|261293857|gb|EEX97353.1| ribosome-binding factor A [Brucella ceti M644/93/1]
          Length = 150

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 14  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 74  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 127


>gi|218461916|ref|ZP_03502007.1| ribosome-binding factor A [Rhizobium etli Kim 5]
          Length = 134

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++ PL VS 
Sbjct: 10  SQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              VI ALN + KFIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P++
Sbjct: 69  HSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123


>gi|190889784|ref|YP_001976326.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
           CIAT 652]
 gi|238692530|sp|B3PXE2|RBFA_RHIE6 RecName: Full=Ribosome-binding factor A
 gi|190695063|gb|ACE89148.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
           CIAT 652]
          Length = 134

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++ PL VS 
Sbjct: 10  SQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              VI ALN + KFIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P++
Sbjct: 69  HSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123


>gi|218662345|ref|ZP_03518275.1| ribosome-binding factor A [Rhizobium etli IE4771]
 gi|218673741|ref|ZP_03523410.1| ribosome-binding factor A [Rhizobium etli GR56]
          Length = 134

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++ PL VS 
Sbjct: 10  SQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              VI ALN + KFIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P++
Sbjct: 69  HSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123


>gi|297247390|ref|ZP_06931108.1| ribosome-binding factor A [Brucella abortus bv. 5 str. B3196]
 gi|297174559|gb|EFH33906.1| ribosome-binding factor A [Brucella abortus bv. 5 str. B3196]
          Length = 171

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 35  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 94

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 95  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 148


>gi|23503014|ref|NP_699141.1| ribosome-binding factor A [Brucella suis 1330]
 gi|62291003|ref|YP_222796.1| ribosome-binding factor A [Brucella abortus bv. 1 str. 9-941]
 gi|82700912|ref|YP_415486.1| ribosome-binding factor A [Brucella melitensis biovar Abortus 2308]
 gi|161620074|ref|YP_001593961.1| ribosome-binding factor A [Brucella canis ATCC 23365]
 gi|189025215|ref|YP_001935983.1| ribosome-binding factor A [Brucella abortus S19]
 gi|254690297|ref|ZP_05153551.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
 gi|254694785|ref|ZP_05156613.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
 gi|254696413|ref|ZP_05158241.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700797|ref|ZP_05162625.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
 gi|254705165|ref|ZP_05166993.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
 gi|254707319|ref|ZP_05169147.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
 gi|254709141|ref|ZP_05170952.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
 gi|254718204|ref|ZP_05180015.1| ribosome-binding factor A [Brucella sp. 83/13]
 gi|254731326|ref|ZP_05189904.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
 gi|256030666|ref|ZP_05444280.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
 gi|256158667|ref|ZP_05456550.1| ribosome-binding factor A [Brucella ceti M490/95/1]
 gi|256254071|ref|ZP_05459607.1| ribosome-binding factor A [Brucella ceti B1/94]
 gi|256258550|ref|ZP_05464086.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
 gi|256370561|ref|YP_003108072.1| ribosome-binding factor A [Brucella microti CCM 4915]
 gi|260169570|ref|ZP_05756381.1| ribosome-binding factor A [Brucella sp. F5/99]
 gi|260546266|ref|ZP_05822006.1| ribosome-binding factor A [Brucella abortus NCTC 8038]
 gi|260567367|ref|ZP_05837837.1| ribosome-binding factor A [Brucella suis bv. 4 str. 40]
 gi|260755837|ref|ZP_05868185.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
 gi|260759060|ref|ZP_05871408.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
 gi|260760785|ref|ZP_05873128.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884862|ref|ZP_05896476.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
 gi|261215112|ref|ZP_05929393.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
 gi|261221212|ref|ZP_05935493.1| ribosome-binding factor A [Brucella ceti B1/94]
 gi|261314801|ref|ZP_05953998.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
 gi|261316640|ref|ZP_05955837.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
 gi|261751305|ref|ZP_05995014.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
 gi|261755870|ref|ZP_05999579.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
 gi|261759097|ref|ZP_06002806.1| ribosome-binding factor A [Brucella sp. F5/99]
 gi|265983161|ref|ZP_06095896.1| ribosome-binding factor A [Brucella sp. 83/13]
 gi|265987712|ref|ZP_06100269.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
 gi|265997173|ref|ZP_06109730.1| ribosome-binding factor A [Brucella ceti M490/95/1]
 gi|294851391|ref|ZP_06792064.1| ribosome-binding factor A [Brucella sp. NVSL 07-0026]
 gi|306839944|ref|ZP_07472738.1| ribosome-binding factor A [Brucella sp. NF 2653]
 gi|306843583|ref|ZP_07476184.1| ribosome-binding factor A [Brucella sp. BO1]
 gi|29427805|sp|Q8FXT1|RBFA_BRUSU RecName: Full=Ribosome-binding factor A
 gi|75496017|sp|Q57A99|RBFA_BRUAB RecName: Full=Ribosome-binding factor A
 gi|123547259|sp|Q2YQR6|RBFA_BRUA2 RecName: Full=Ribosome-binding factor A
 gi|172048298|sp|A5VTB3|RBFA_BRUO2 RecName: Full=Ribosome-binding factor A
 gi|189039529|sp|A9M9Z5|RBFA_BRUC2 RecName: Full=Ribosome-binding factor A
 gi|238689419|sp|B2S9F7|RBFA_BRUA1 RecName: Full=Ribosome-binding factor A
 gi|23349055|gb|AAN31056.1| ribosome-binding factor A [Brucella suis 1330]
 gi|62197135|gb|AAX75435.1| RbfA, ribosome-binding factor A [Brucella abortus bv. 1 str. 9-941]
 gi|82617013|emb|CAJ12122.1| Ribosome-binding factor A [Brucella melitensis biovar Abortus 2308]
 gi|161336885|gb|ABX63190.1| ribosome-binding factor A [Brucella canis ATCC 23365]
 gi|189020787|gb|ACD73509.1| Ribosome-binding factor A [Brucella abortus S19]
 gi|256000724|gb|ACU49123.1| ribosome-binding factor A [Brucella microti CCM 4915]
 gi|260096373|gb|EEW80249.1| ribosome-binding factor A [Brucella abortus NCTC 8038]
 gi|260156885|gb|EEW91965.1| ribosome-binding factor A [Brucella suis bv. 4 str. 40]
 gi|260669378|gb|EEX56318.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
 gi|260671217|gb|EEX58038.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675945|gb|EEX62766.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
 gi|260874390|gb|EEX81459.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
 gi|260916719|gb|EEX83580.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
 gi|260919796|gb|EEX86449.1| ribosome-binding factor A [Brucella ceti B1/94]
 gi|261295863|gb|EEX99359.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
 gi|261303827|gb|EEY07324.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
 gi|261739081|gb|EEY27077.1| ribosome-binding factor A [Brucella sp. F5/99]
 gi|261741058|gb|EEY28984.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
 gi|261745623|gb|EEY33549.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
 gi|262551641|gb|EEZ07631.1| ribosome-binding factor A [Brucella ceti M490/95/1]
 gi|264659909|gb|EEZ30170.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
 gi|264661753|gb|EEZ32014.1| ribosome-binding factor A [Brucella sp. 83/13]
 gi|294819980|gb|EFG36979.1| ribosome-binding factor A [Brucella sp. NVSL 07-0026]
 gi|306276274|gb|EFM57974.1| ribosome-binding factor A [Brucella sp. BO1]
 gi|306404908|gb|EFM61193.1| ribosome-binding factor A [Brucella sp. NF 2653]
          Length = 150

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 14  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 74  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 127


>gi|150398628|ref|YP_001329095.1| ribosome-binding factor A [Sinorhizobium medicae WSM419]
 gi|166219408|sp|A6UF30|RBFA_SINMW RecName: Full=Ribosome-binding factor A
 gi|150030143|gb|ABR62260.1| ribosome-binding factor A [Sinorhizobium medicae WSM419]
          Length = 134

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 90/128 (70%), Gaps = 2/128 (1%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K+ +   S+R LRVGE+VR+A+  V+   + +D LI   VISISEV MS DL++AT Y++
Sbjct: 3   KSTSSAPSQRMLRVGEQVRAAITQVLQRGDVRDPLIESTVISISEVRMSPDLKLATAYVT 62

Query: 62  LPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
            PL V+    VI ALN + KFIRGR+G  LR ++Y+P++RFR DTS ++Y K+++L+  P
Sbjct: 63  -PLGVADHAAVIEALNKHAKFIRGRLGPHLRQMKYMPDVRFRDDTSFENYQKIDSLLRSP 121

Query: 121 KIPVALEK 128
           ++   L++
Sbjct: 122 EVSRDLDR 129


>gi|15963993|ref|NP_384346.1| ribosome-binding factor A [Sinorhizobium meliloti 1021]
 gi|307306405|ref|ZP_07586149.1| ribosome-binding factor A [Sinorhizobium meliloti BL225C]
 gi|307319292|ref|ZP_07598721.1| ribosome-binding factor A [Sinorhizobium meliloti AK83]
 gi|20978620|sp|Q92SW3|RBFA_RHIME RecName: Full=Ribosome-binding factor A
 gi|15073169|emb|CAC41677.1| Probable ribosome-binding factor A, rRNA processing protein
           [Sinorhizobium meliloti 1021]
 gi|306895128|gb|EFN25885.1| ribosome-binding factor A [Sinorhizobium meliloti AK83]
 gi|306902247|gb|EFN32844.1| ribosome-binding factor A [Sinorhizobium meliloti BL225C]
          Length = 135

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 88/128 (68%), Gaps = 2/128 (1%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K+ +   S+R LRVGE+VR+A+  V+   E  D LI   VISISEV MS DL++AT Y++
Sbjct: 3   KSTSSAPSQRMLRVGEQVRAAITQVLQRGEVLDPLIENTVISISEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
            PL V+    VI ALN + KFIRGR+G  LR ++Y+P++RFR DTS  +Y K+++L+  P
Sbjct: 63  -PLGVADHAAVIEALNKHAKFIRGRLGPQLRQMKYMPDVRFRDDTSFDNYQKIDSLLRSP 121

Query: 121 KIPVALEK 128
           ++   L++
Sbjct: 122 EVSRDLDR 129


>gi|148560113|ref|YP_001259960.1| ribosome-binding factor A [Brucella ovis ATCC 25840]
 gi|225626531|ref|ZP_03784570.1| ribosome-binding factor A [Brucella ceti str. Cudo]
 gi|237816506|ref|ZP_04595499.1| ribosome-binding factor A [Brucella abortus str. 2308 A]
 gi|148371370|gb|ABQ61349.1| ribosome-binding factor A [Brucella ovis ATCC 25840]
 gi|225618188|gb|EEH15231.1| ribosome-binding factor A [Brucella ceti str. Cudo]
 gi|237788573|gb|EEP62788.1| ribosome-binding factor A [Brucella abortus str. 2308 A]
          Length = 197

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 61  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 120

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 121 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 174


>gi|209551637|ref|YP_002283554.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226723606|sp|B5ZW28|RBFA_RHILW RecName: Full=Ribosome-binding factor A
 gi|209537393|gb|ACI57328.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 134

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 83/115 (72%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++ PL VS 
Sbjct: 10  SQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68

Query: 69  DRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             V I ALN + ++IRGR+G+ LR ++Y+PE+RFR DTS  +Y K++ L+  P++
Sbjct: 69  HSVVIEALNRHARYIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123


>gi|256060126|ref|ZP_05450308.1| ribosome-binding factor A [Brucella neotomae 5K33]
 gi|261324103|ref|ZP_05963300.1| ribosome-binding factor A [Brucella neotomae 5K33]
 gi|261300083|gb|EEY03580.1| ribosome-binding factor A [Brucella neotomae 5K33]
          Length = 150

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 14  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERIVISVSEVRMSPDLKIATCFIAPLGSADP 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 74  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 127


>gi|153008082|ref|YP_001369297.1| ribosome-binding factor A [Ochrobactrum anthropi ATCC 49188]
 gi|166219382|sp|A6WWW4|RBFA_OCHA4 RecName: Full=Ribosome-binding factor A
 gi|151559970|gb|ABS13468.1| ribosome-binding factor A [Ochrobactrum anthropi ATCC 49188]
          Length = 150

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 4/125 (3%)

Query: 2   KNKNPKNS----RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT 57
           ++ +PK S    +R LRVGE+VR AL  V+   E +D LI+  VIS+SEV MS DL++AT
Sbjct: 3   RSPDPKGSGGLSQRQLRVGEQVRHALAQVLQRGEIRDDLIAHTVISVSEVRMSPDLKIAT 62

Query: 58  VYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +I+   +     VI AL  N KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+
Sbjct: 63  CFITPLGNADTQAVIKALAANAKFIRGRMAPSLSQMKYMPEFRFRADTSFDNFSKIDALL 122

Query: 118 CLPKI 122
             P++
Sbjct: 123 RSPEV 127


>gi|163844179|ref|YP_001628584.1| ribosome-binding factor A [Brucella suis ATCC 23445]
 gi|189039530|sp|B0CK12|RBFA_BRUSI RecName: Full=Ribosome-binding factor A
 gi|163674902|gb|ABY39013.1| ribosome-binding factor A [Brucella suis ATCC 23445]
          Length = 150

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 76/114 (66%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR  L  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 14  SQRQLRVGEQVRHTLAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 74  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 127


>gi|116249890|ref|YP_765728.1| ribosome-binding factor A [Rhizobium leguminosarum bv. viciae 3841]
 gi|166219398|sp|Q1MN40|RBFA_RHIL3 RecName: Full=Ribosome-binding factor A
 gi|115254538|emb|CAK05612.1| putative ribosome-binding factor protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 134

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LR+GE+VR+A+  V+   E +D +I   VIS+SEV MS DL++AT Y++ PL VS 
Sbjct: 10  SQRMLRIGEQVRAAITQVLQRGEVRDDVIEATVISVSEVRMSPDLKIATAYVT-PLGVSD 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              VI ALN + +FIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P++
Sbjct: 69  HSIVIEALNRHARFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123


>gi|163757751|ref|ZP_02164840.1| ribosome-binding factor A [Hoeflea phototrophica DFL-43]
 gi|162285253|gb|EDQ35535.1| ribosome-binding factor A [Hoeflea phototrophica DFL-43]
          Length = 148

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR+A+  V+   + +D ++S  +IS++EV MS DL+VAT Y++ PL V  
Sbjct: 10  SQRMLRVGEQVRAAITQVLQRGDIRDPILSNTLISVTEVRMSPDLQVATAYVT-PLGVED 68

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
               I+ALN N +FIRGRI   LR +R +PELRFR DTS ++Y K++AL+  P++
Sbjct: 69  HAATIAALNKNARFIRGRISPDLRQMRNIPELRFRDDTSFENYSKIDALLRSPEV 123


>gi|114706047|ref|ZP_01438950.1| ribosome-binding factor A [Fulvimarina pelagi HTCC2506]
 gi|114538893|gb|EAU42014.1| ribosome-binding factor A [Fulvimarina pelagi HTCC2506]
          Length = 140

 Score =  106 bits (265), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 82/120 (68%), Gaps = 4/120 (3%)

Query: 5   NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-- 62
           N   S+R L VGE+VR AL  V+   E +D L+ R V+S+SEV MS DL++AT Y+++  
Sbjct: 7   NAGPSQRQLSVGEKVRHALTEVMQRGEIRDPLLERAVVSVSEVRMSPDLKIATAYVTVLG 66

Query: 63  PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             D+ P   I ALN + KFIRGR+  SL+ ++Y+PE+RFR DTS  ++ +++AL+  P++
Sbjct: 67  QEDMQP--FIKALNDHAKFIRGRVTPSLKQMKYMPEIRFREDTSFDNFARIDALLKSPEV 124


>gi|319406544|emb|CBI80186.1| Ribosome-binding factor A [Bartonella sp. 1-1C]
          Length = 137

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 3/127 (2%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL- 62
           KNP  S+R LRVGE+VR A+  ++      D +    VIS+SEV MS DL++AT ++S  
Sbjct: 2   KNPHPSQRQLRVGEQVRHAIAHILQRGILLDDIFKNIVISVSEVRMSSDLKIATCFVSFL 61

Query: 63  -PLD-VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
             +D  S D +ISALN N +FIRG I   LR ++Y+P LRFR+D S  ++ K++ L+  P
Sbjct: 62  NTVDQTSHDAIISALNKNSRFIRGAISHQLRQMKYMPALRFRFDNSFDNFAKIDTLLRSP 121

Query: 121 KIPVALE 127
           ++   L 
Sbjct: 122 EVARDLH 128


>gi|260461979|ref|ZP_05810224.1| ribosome-binding factor A [Mesorhizobium opportunistum WSM2075]
 gi|259032226|gb|EEW33492.1| ribosome-binding factor A [Mesorhizobium opportunistum WSM2075]
          Length = 156

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
           S+R LRVGE+VR AL   +   +  D LI   V+S+SEV MS DL++AT ++S PL    
Sbjct: 10  SQRMLRVGEQVRHALSETLQRGDIIDPLIENSVVSVSEVRMSPDLKIATAFVS-PLGAKD 68

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            + VI ALN + KF+RGR+  +LR ++Y+PE RFR DTS  ++ ++N L+  P++
Sbjct: 69  AEAVIEALNKHAKFVRGRVSGALRQMKYMPEFRFRLDTSFDNFARINDLLKSPEV 123


>gi|306842725|ref|ZP_07475368.1| ribosome-binding factor A [Brucella sp. BO2]
 gi|306287171|gb|EFM58673.1| ribosome-binding factor A [Brucella sp. BO2]
          Length = 131

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 72/108 (66%)

Query: 15  VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
           +GE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P  VI A
Sbjct: 1   MGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADPQAVIKA 60

Query: 75  LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           L  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++
Sbjct: 61  LASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 108


>gi|319408010|emb|CBI81664.1| Ribosome-binding factor A [Bartonella schoenbuchensis R1]
          Length = 135

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 82/126 (65%), Gaps = 7/126 (5%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKN  P  S+R LRVGE+VR  L  ++  +   D ++   VISISEV MS DL++AT ++
Sbjct: 1   MKNTGP--SQRQLRVGEQVRHVLAHILQRDILLDDVLKGVVISISEVRMSADLKIATCFV 58

Query: 61  SLPL----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
           S PL    D+S   +I  LN + +FIR  I   LR ++Y+PELRFR+D+S  ++ K++AL
Sbjct: 59  S-PLSTIHDISHTAIIEVLNKHSRFIRKEISHQLRQMKYMPELRFRFDSSFDNFSKIDAL 117

Query: 117 MCLPKI 122
           +  P++
Sbjct: 118 LHSPEV 123


>gi|13474630|ref|NP_106199.1| ribosome-binding factor A [Mesorhizobium loti MAFF303099]
 gi|20978641|sp|Q98BI7|RBFA_RHILO RecName: Full=Ribosome-binding factor A
 gi|14025384|dbj|BAB51985.1| ribosome-binding factor A [Mesorhizobium loti MAFF303099]
          Length = 146

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 76/115 (66%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
           S+R LRV E+VR AL   +   E  D LI   V+S+SEV MS DLRVAT ++S PL    
Sbjct: 10  SQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLRVATAFVS-PLGAKD 68

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            D V+ ALN + KF+RGR+  +LR ++++PE RF+ DTS  ++ ++N L+  P++
Sbjct: 69  TDAVVEALNKHAKFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPEV 123


>gi|319779768|ref|YP_004139244.1| ribosome-binding factor A [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317165656|gb|ADV09194.1| ribosome-binding factor A [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 146

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 76/115 (66%), Gaps = 2/115 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
           S+R LRV E+VR AL   +   E  D LI   V+S+SEV MS DL+VAT ++S PL    
Sbjct: 10  SQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLKVATAFVS-PLGAKD 68

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            D V+ ALN + KF+RGR+  +LR ++++PE RF+ DTS  ++ ++N L+  P++
Sbjct: 69  TDAVVEALNKHAKFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPEV 123


>gi|319405098|emb|CBI78702.1| Ribosome-binding factor A [Bartonella sp. AR 15-3]
          Length = 138

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 3/123 (2%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL- 62
           KN  +S+R LRVGE+VR A+  ++      D      VIS+SEV MS DL+VAT ++S  
Sbjct: 3   KNISSSQRQLRVGEQVRHAIAHILQRGILLDDTFKNIVISVSEVRMSSDLKVATCFVSFL 62

Query: 63  -PLD-VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
             +D  S D +++ALN N +FIRG I   LR ++Y+P LRFR+D S  ++ K++AL+  P
Sbjct: 63  NTVDKASHDTIVNALNKNSRFIRGAISHQLRQMKYMPTLRFRFDNSFDNFAKIDALLRSP 122

Query: 121 KIP 123
           ++ 
Sbjct: 123 EVA 125


>gi|319403628|emb|CBI77213.1| Ribosome-binding factor A [Bartonella rochalimae ATCC BAA-1498]
          Length = 138

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 78/127 (61%), Gaps = 3/127 (2%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL- 62
           KN   S+R LRVGE+VR A+  ++      D      VIS+SEV MS DL++AT ++S  
Sbjct: 3   KNIHPSQRQLRVGEQVRHAIAHILQRGVLLDDTFKNIVISVSEVRMSSDLKIATCFVSFL 62

Query: 63  -PLD-VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
             +D  S D ++SALN N +FIRG I   LR ++Y+P LRFR+D S  ++ K++ L+  P
Sbjct: 63  NTVDQTSHDAIVSALNKNSRFIRGAISHQLRQMKYMPALRFRFDNSFDNFAKIDTLLRSP 122

Query: 121 KIPVALE 127
           ++   L 
Sbjct: 123 EVARDLH 129


>gi|110636255|ref|YP_676463.1| ribosome-binding factor A [Mesorhizobium sp. BNC1]
 gi|123057284|sp|Q11BC7|RBFA_MESSB RecName: Full=Ribosome-binding factor A
 gi|110287239|gb|ABG65298.1| ribosome-binding factor A [Chelativorans sp. BNC1]
          Length = 133

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 79/114 (69%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+ R AL  V+   + +D  +   VIS+SEV MS DL++ATV++S PL    
Sbjct: 7   SQRQLRVGEQARHALSDVLQREDMRDPALEGAVISVSEVRMSPDLKIATVFVS-PLSGDK 65

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           + +I+ALN + ++IRGR+  +LR ++Y+PE RF  DTS +++ K++ ++  P++
Sbjct: 66  EAIIAALNRHARYIRGRVSPALRQMKYMPEFRFHLDTSYENFEKIDRILRSPEV 119


>gi|218515711|ref|ZP_03512551.1| ribosome-binding factor A [Rhizobium etli 8C-3]
          Length = 116

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 74/106 (69%), Gaps = 2/106 (1%)

Query: 18  EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALN 76
           +VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++ PL VS    VI ALN
Sbjct: 1   QVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT-PLGVSDHSIVIEALN 59

Query: 77  CNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            + KFIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P++
Sbjct: 60  RHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 105


>gi|240849880|ref|YP_002971268.1| ribosomal-binding factor A [Bartonella grahamii as4aup]
 gi|240267003|gb|ACS50591.1| ribosomal-binding factor A [Bartonella grahamii as4aup]
          Length = 135

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 81/123 (65%), Gaps = 5/123 (4%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           KN K S+R LRV E+VR A+  ++  +   D ++   VIS+SEV MS DL++AT ++S P
Sbjct: 2   KNAKPSQRQLRVAEQVRHAIAHILQRDILLDDILKDIVISVSEVRMSPDLKIATCFVS-P 60

Query: 64  L----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
           L    +VS   V+  LN + +F+RG I  +LR ++Y+PELRFR D S  ++ K++AL+  
Sbjct: 61  LSTLKNVSHTDVVDTLNKHSRFLRGEISHALRQMKYMPELRFRLDNSFDNFSKIDALLRS 120

Query: 120 PKI 122
           P++
Sbjct: 121 PEV 123


>gi|49473869|ref|YP_031911.1| ribosome-binding factor A [Bartonella quintana str. Toulouse]
 gi|61215005|sp|Q6G0P3|RBFA_BARQU RecName: Full=Ribosome-binding factor A
 gi|49239372|emb|CAF25705.1| Ribosomal-binding factor A [Bartonella quintana str. Toulouse]
          Length = 135

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 82/125 (65%), Gaps = 5/125 (4%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKN  P  S+R LRVGE+VR A+ + +      D L+   VIS++EV MS DL++AT ++
Sbjct: 1   MKNAGP--SQRQLRVGEQVRHAVAYKLQQGILLDDLLKNIVISVAEVRMSPDLKIATCFV 58

Query: 61  S---LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S      +VSP  V++ LN + +FIR  I  SLR ++Y+PELRFR DTS  ++ K+++L+
Sbjct: 59  SSLSTLHNVSPTDVVNVLNKHSRFIRREISYSLRQMKYMPELRFRLDTSFDNFSKIDSLL 118

Query: 118 CLPKI 122
             P++
Sbjct: 119 RSPEV 123


>gi|90420530|ref|ZP_01228437.1| ribosome-binding factor A [Aurantimonas manganoxydans SI85-9A1]
 gi|90335258|gb|EAS49011.1| ribosome-binding factor A [Aurantimonas manganoxydans SI85-9A1]
          Length = 137

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 76/114 (66%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R L VGE+VR AL  V+   E  D ++ + ++ ++EV MS DL++AT Y+++      
Sbjct: 10  SQRQLSVGEKVRHALTEVMQRGEINDPMLEKALVLVTEVRMSSDLKLATAYVTILGQTET 69

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              + ALN N +FIRGR+  +LR ++Y+PE+RFR DTS  ++ +++AL+  P++
Sbjct: 70  KPFVDALNRNARFIRGRLTPALRQMKYMPEVRFRTDTSFDNFARIDALLKSPEV 123


>gi|49475026|ref|YP_033067.1| ribosome-binding factor A [Bartonella henselae str. Houston-1]
 gi|61215011|sp|Q6G4W8|RBFA_BARHE RecName: Full=Ribosome-binding factor A
 gi|49237831|emb|CAF27026.1| Ribosomal-binding factor A [Bartonella henselae str. Houston-1]
          Length = 135

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 7/126 (5%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKN  P  S+R LRVGE+VR A+  ++      D L+   VIS+ EV MS DL++A  ++
Sbjct: 1   MKNAEP--SQRQLRVGEQVRHAVAHILQQGILLDNLLKNMVISVVEVRMSPDLKIAICFV 58

Query: 61  SLPL----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
           S PL    + S   V++ALN + +FIRG I  SLR ++Y+PELRFR D S  ++ K++AL
Sbjct: 59  S-PLSTVHNASRADVVNALNKHSRFIRGEISHSLRQMKYMPELRFRLDNSFDNFSKIDAL 117

Query: 117 MCLPKI 122
           +  P++
Sbjct: 118 LRSPEV 123


>gi|319898336|ref|YP_004158429.1| Ribosome-binding factor A [Bartonella clarridgeiae 73]
 gi|319402300|emb|CBI75839.1| Ribosome-binding factor A [Bartonella clarridgeiae 73]
          Length = 136

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 82/129 (63%), Gaps = 5/129 (3%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           KN   S+R LR+GE+VR A+  ++  +   D  +   +IS+SEV MS DL++AT ++S P
Sbjct: 3   KNIGPSQRQLRIGEQVRHAVAHILQRDVLLDDALRNIIISVSEVRMSSDLKIATCFVS-P 61

Query: 64  LDV----SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
           L+     S + +ISALN + +FIRG +   LR ++Y+P LRFR+D S  ++ K++AL+  
Sbjct: 62  LNTVDKTSHNAIISALNKHSRFIRGAVSHQLRQMKYMPILRFRFDNSFDNFAKIDALLRS 121

Query: 120 PKIPVALEK 128
           P++   L  
Sbjct: 122 PEVARDLHH 130


>gi|121601742|ref|YP_989504.1| ribosome-binding factor A [Bartonella bacilliformis KC583]
 gi|120613919|gb|ABM44520.1| ribosome-binding factor A [Bartonella bacilliformis KC583]
          Length = 148

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 3/122 (2%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL- 62
           K+   S+R LRVGE+VR AL  ++      D  +   V S+SEV MS DL++AT ++S  
Sbjct: 16  KHADLSQRQLRVGEQVRHALAHMLQRGILLDDALKDVVFSVSEVRMSPDLKIATCFVSFL 75

Query: 63  --PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
               D+S   +I  LN + +FIRG I  SLR ++Y+PELRFR D S  ++ K++AL+ LP
Sbjct: 76  NTVDDISRATLIKVLNKHSRFIRGEISSSLRQMKYMPELRFRLDNSFDNFSKIDALLRLP 135

Query: 121 KI 122
           ++
Sbjct: 136 EV 137


>gi|171769483|sp|A1UU51|RBFA_BARBK RecName: Full=Ribosome-binding factor A
          Length = 134

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 3/122 (2%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL- 62
           K+   S+R LRVGE+VR AL  ++      D  +   V S+SEV MS DL++AT ++S  
Sbjct: 2   KHADLSQRQLRVGEQVRHALAHMLQRGILLDDALKDVVFSVSEVRMSPDLKIATCFVSFL 61

Query: 63  --PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
               D+S   +I  LN + +FIRG I  SLR ++Y+PELRFR D S  ++ K++AL+ LP
Sbjct: 62  NTVDDISRATLIKVLNKHSRFIRGEISSSLRQMKYMPELRFRLDNSFDNFSKIDALLRLP 121

Query: 121 KI 122
           ++
Sbjct: 122 EV 123


>gi|163867510|ref|YP_001608709.1| ribosome-binding factor A [Bartonella tribocorum CIP 105476]
 gi|189039527|sp|A9IMT2|RBFA_BART1 RecName: Full=Ribosome-binding factor A
 gi|161017156|emb|CAK00714.1| Ribosome-binding factor A [Bartonella tribocorum CIP 105476]
          Length = 135

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 81/126 (64%), Gaps = 7/126 (5%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKN  P  S+R LRV E+VR A+  ++      D ++   VIS+SEV +S DL++AT ++
Sbjct: 1   MKNAGP--SQRQLRVAEQVRHAVAHILQRGILLDDVLKDIVISVSEVRISPDLKIATCFV 58

Query: 61  SLPL----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
           S PL    + S   V++ LN + +F+RG I  +LR ++Y+PELRFR D S  ++ K++AL
Sbjct: 59  S-PLSTLKNTSHTDVVNTLNKHSRFLRGEISHALRQMKYMPELRFRLDNSFDNFSKIDAL 117

Query: 117 MCLPKI 122
           +  P++
Sbjct: 118 LRSPEV 123


>gi|304392770|ref|ZP_07374710.1| ribosome-binding factor A [Ahrensia sp. R2A130]
 gi|303295400|gb|EFL89760.1| ribosome-binding factor A [Ahrensia sp. R2A130]
          Length = 150

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 2/116 (1%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           KNK P  S+R LRVGE VR ALM V+   +  D +++  +I+ISEV M+ DL++A  Y+S
Sbjct: 3   KNKGP--SQRQLRVGELVRHALMDVLAREQLDDPVLASAMITISEVRMTADLKIANCYVS 60

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           L      + V+ AL     F+RGR G  L  +R +P  RFR DTS +++ +++AL+
Sbjct: 61  LLGGGDMEAVLKALGRAEGFLRGRSGPHLSQMRSMPTFRFREDTSFENFARIDALL 116


>gi|154244249|ref|YP_001415207.1| ribosome-binding factor A [Xanthobacter autotrophicus Py2]
 gi|238686704|sp|A7IC07|RBFA_XANP2 RecName: Full=Ribosome-binding factor A
 gi|154158334|gb|ABS65550.1| ribosome-binding factor A [Xanthobacter autotrophicus Py2]
          Length = 151

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 75/117 (64%), Gaps = 7/117 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGE VR AL  V+      D +++  +I++ EV MS DL++AT Y+ +PL   D
Sbjct: 12  SQRMLRVGELVRHALADVLQRGSVTDPVLAAHIITVPEVRMSPDLKIATCYV-MPLGGKD 70

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           ++P  VI AL  N +++R  +GR +  L+ VPELRFR DTS     +++AL+  PK+
Sbjct: 71  ITP--VIKALAANARYLRLEVGRRM-ELKSVPELRFREDTSFDEGARMDALLRSPKV 124


>gi|298293851|ref|YP_003695790.1| ribosome-binding factor A [Starkeya novella DSM 506]
 gi|296930362|gb|ADH91171.1| ribosome-binding factor A [Starkeya novella DSM 506]
          Length = 141

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 6/132 (4%)

Query: 1   MKNKNPKNS---RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT 57
           MKN+    S   +R LRVGE VR AL  ++   +  D  +S+ +I++ EV MS DL++AT
Sbjct: 1   MKNRASSGSGPSQRQLRVGELVRHALAEILARGDLPDPALSKVMITVPEVRMSPDLKIAT 60

Query: 58  VYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
            Y+ +PL     +  I AL  N K +RG I R +  L++VPELRFR DTS +   +++AL
Sbjct: 61  CYV-MPLGGKDHKAAIDALATNAKPLRGEIARRV-ELKFVPELRFRIDTSFEEGDRIDAL 118

Query: 117 MCLPKIPVALEK 128
           +  P++   L+K
Sbjct: 119 LRSPQVQRDLDK 130


>gi|115522224|ref|YP_779135.1| ribosome-binding factor A [Rhodopseudomonas palustris BisA53]
 gi|122298068|sp|Q07V79|RBFA_RHOP5 RecName: Full=Ribosome-binding factor A
 gi|115516171|gb|ABJ04155.1| ribosome-binding factor A [Rhodopseudomonas palustris BisA53]
          Length = 138

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 3/123 (2%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
            KN   + S+R LRVGE VR A+  ++      D ++   ++++ EV MS DL++AT+Y+
Sbjct: 6   QKNSGREASQRQLRVGESVRHAIAEILAQGGVHDPVLEGHLVTVPEVRMSPDLKLATIYV 65

Query: 61  SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
            +PL     + V+ AL+ N KF+RG + R + NL++ PELRFR D       ++  L+  
Sbjct: 66  -MPLGGRDTELVLKALDHNKKFLRGEVSRRV-NLKFAPELRFRADDRFDEAERIEKLLRT 123

Query: 120 PKI 122
           P +
Sbjct: 124 PAV 126


>gi|85714174|ref|ZP_01045163.1| ribosome-binding factor A [Nitrobacter sp. Nb-311A]
 gi|85699300|gb|EAQ37168.1| ribosome-binding factor A [Nitrobacter sp. Nb-311A]
          Length = 137

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 7/122 (5%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           K+P  S R LRV E VR A+  ++   +  D ++   ++++ EV MS DL++AT+Y+ +P
Sbjct: 9   KHPGGSHRQLRVAESVRHAIADILAQGQVHDPVLEGRLVTVPEVRMSADLKLATIYV-MP 67

Query: 64  L---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
           L   D +   VI AL+ N KF+RG I R + NL++ P++RFR D       ++  L+  P
Sbjct: 68  LGGRDTA--EVIDALDHNRKFLRGEIARRV-NLKFAPDIRFRVDERFDEAERIEKLLRTP 124

Query: 121 KI 122
            +
Sbjct: 125 AV 126


>gi|300024999|ref|YP_003757610.1| ribosome-binding factor A [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526820|gb|ADJ25289.1| ribosome-binding factor A [Hyphomicrobium denitrificans ATCC 51888]
          Length = 132

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 7/117 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGE +R  +  ++   E  D +++  VI+I EV +S DL++ATVY+ +PL   D
Sbjct: 14  SQRMLRVGELIRHKIAEMLSRGEIHDDVLASHVITIPEVRLSPDLKLATVYV-MPLGGND 72

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           V P  VI AL  N K+IR  +  +L NLRY P+LRFR D + +   +++ L+   K+
Sbjct: 73  VKP--VIEALTRNKKYIRAEVAHTL-NLRYAPDLRFREDETFEEATRIDRLLDSEKV 126


>gi|172046706|sp|Q3SWP8|RBFA_NITWN RecName: Full=Ribosome-binding factor A
          Length = 137

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 7/123 (5%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
            K+P  S R LRV E VR A+  ++   +  D ++   ++++ EV MS DL++AT+Y+ +
Sbjct: 8   EKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPEVRMSADLKLATIYV-M 66

Query: 63  PL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
           PL   D +   VI AL+ N KF+RG I R + NL++ P++RFR D       ++  L+  
Sbjct: 67  PLGGRDTA--DVIDALDRNRKFLRGEIARRV-NLKFAPDIRFRVDERFDEAERIEKLLRT 123

Query: 120 PKI 122
           P +
Sbjct: 124 PAV 126


>gi|75674224|ref|YP_316645.1| ribosome-binding factor A [Nitrobacter winogradskyi Nb-255]
 gi|74419094|gb|ABA03293.1| ribosome-binding factor A [Nitrobacter winogradskyi Nb-255]
          Length = 146

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 7/123 (5%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
            K+P  S R LRV E VR A+  ++   +  D ++   ++++ EV MS DL++AT+Y+ +
Sbjct: 17  EKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPEVRMSADLKLATIYV-M 75

Query: 63  PL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
           PL   D +   VI AL+ N KF+RG I R + NL++ P++RFR D       ++  L+  
Sbjct: 76  PLGGRDTAD--VIDALDRNRKFLRGEIARRV-NLKFAPDIRFRVDERFDEAERIEKLLRT 132

Query: 120 PKI 122
           P +
Sbjct: 133 PAV 135


>gi|27375893|ref|NP_767422.1| ribosome-binding factor A [Bradyrhizobium japonicum USDA 110]
 gi|32171617|sp|Q89WB0|RBFA_BRAJA RecName: Full=Ribosome-binding factor A
 gi|27349031|dbj|BAC46047.1| ribosome-binding factor A [Bradyrhizobium japonicum USDA 110]
          Length = 144

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
            S+R LRVGE+VR A+  ++      D  +   ++++ EV MS DL++AT+Y+ +PL   
Sbjct: 15  GSQRQLRVGEQVRHAMAEILAQGNVHDADLEGHIVTVPEVRMSPDLKLATIYV-MPLGGR 73

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
             + VI+AL  N KF+RG + R + NL++ P++RFR D       ++  L+  P +   L
Sbjct: 74  DTEIVIAALERNKKFLRGEVARRV-NLKFAPDVRFRVDERFDEAERIEKLLRTPAVQKDL 132

Query: 127 EK 128
           E+
Sbjct: 133 EQ 134


>gi|197106896|ref|YP_002132273.1| ribosome-binding factor A [Phenylobacterium zucineum HLK1]
 gi|238690151|sp|B4RC51|RBFA_PHEZH RecName: Full=Ribosome-binding factor A
 gi|196480316|gb|ACG79844.1| ribosome-binding factor A [Phenylobacterium zucineum HLK1]
          Length = 145

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LR GE VR AL+ +    E  D +++   ++++EV +S DLR ATV++        
Sbjct: 16  SQRQLRAGELVRHALVEIFREEEINDPVLAGVSVTVTEVRVSPDLRHATVFVEPLGGEHA 75

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           D V+ ALN + +F+RG +GR++  LR+ PEL+F +D S     ++  L   PK+
Sbjct: 76  DEVVQALNRHARFLRGHLGRAI-ELRFTPELKFLHDESFNEAARMAKLFDDPKV 128


>gi|254295407|ref|YP_003061430.1| ribosome-binding factor A [Hirschia baltica ATCC 49814]
 gi|254043938|gb|ACT60733.1| ribosome-binding factor A [Hirschia baltica ATCC 49814]
          Length = 143

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 7/122 (5%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           K P  S+R LR GE VR AL+ ++L  +F D  ++   I++SEV MS DL+ AT Y++ P
Sbjct: 10  KGP--SQRQLRAGELVRHALVDILLREQFNDPALADVSITVSEVRMSPDLQHATCYVA-P 66

Query: 64  L---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
           L   + + + ++  LN    F+RGR+GR + ++RY P+LRF  D S     K+  L+  P
Sbjct: 67  LGGDESAQESIVHGLNRAKGFLRGRLGREI-DMRYTPQLRFLSDDSYTEAGKIGDLLASP 125

Query: 121 KI 122
           ++
Sbjct: 126 EV 127


>gi|241761096|ref|ZP_04759185.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260752938|ref|YP_003225831.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|241374715|gb|EER64176.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552301|gb|ACV75247.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 141

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 76/128 (59%), Gaps = 2/128 (1%)

Query: 2   KNKNPK-NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           +N+ P+ +S R LRVGE++R  L  +++  E     +    +SISEV M+ DLR+ATV++
Sbjct: 3   RNQTPEGHSIRPLRVGEQIRHVLAEMLMRGEIHGDTLDNLFVSISEVRMTPDLRIATVFV 62

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
                 S D VI  L+ N  F++  I + +R L+YVP+LRF  D S +   ++++L+  P
Sbjct: 63  KSLGGASDDTVIGVLSKNASFLQAAIAKKIR-LKYVPKLRFLADESFEQGSRIDSLLRSP 121

Query: 121 KIPVALEK 128
            +   L++
Sbjct: 122 HVQRDLQE 129


>gi|39933512|ref|NP_945788.1| ribosome-binding factor A [Rhodopseudomonas palustris CGA009]
 gi|192288870|ref|YP_001989475.1| ribosome-binding factor A [Rhodopseudomonas palustris TIE-1]
 gi|61215050|sp|Q6NCN6|RBFA_RHOPA RecName: Full=Ribosome-binding factor A
 gi|229568643|sp|B3QAB3|RBFA_RHOPT RecName: Full=Ribosome-binding factor A
 gi|39647358|emb|CAE25879.1| putative ribosome-binding factor A [Rhodopseudomonas palustris
           CGA009]
 gi|192282619|gb|ACE98999.1| ribosome-binding factor A [Rhodopseudomonas palustris TIE-1]
          Length = 137

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 3/128 (2%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
            K+  P  S R+LRVGE +R A+  ++      D ++   ++++ EV MS DL++AT+Y+
Sbjct: 6   QKSSPPGGSTRSLRVGELIRHAVAEILAQGGVHDPVLESHLVTVPEVRMSPDLKLATIYV 65

Query: 61  SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
            +PL    ++ VI AL  + +F+RG I   + NL++ PELRFR D       +++ L+  
Sbjct: 66  -MPLGGRDEKLVIDALEHHKRFLRGEIAHRV-NLKFAPELRFRIDERFAEAERIDKLLRS 123

Query: 120 PKIPVALE 127
           P +   LE
Sbjct: 124 PAVQKDLE 131


>gi|56551449|ref|YP_162288.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ZM4]
 gi|61214722|sp|Q5NQ28|RBFA_ZYMMO RecName: Full=Ribosome-binding factor A
 gi|56543023|gb|AAV89177.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 141

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 76/128 (59%), Gaps = 2/128 (1%)

Query: 2   KNKNPK-NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           +N+ P+ +S R LRVGE++R  L  +++  E     +    +SISEV M+ DLR+ATV++
Sbjct: 3   RNQTPEGHSIRPLRVGEQIRHVLAEMLMRGEIHGDTLDNLFVSISEVRMTPDLRIATVFV 62

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
                 S D VI  L+ N  F++  I + +R L+YVP+LRF  D S +   ++++L+  P
Sbjct: 63  KSLGGASDDTVIGILSKNASFLQAAIAKKIR-LKYVPKLRFLADESFEQGSRIDSLLRSP 121

Query: 121 KIPVALEK 128
            +   L++
Sbjct: 122 HVQRDLQE 129


>gi|299133372|ref|ZP_07026567.1| ribosome-binding factor A [Afipia sp. 1NLS2]
 gi|298593509|gb|EFI53709.1| ribosome-binding factor A [Afipia sp. 1NLS2]
          Length = 140

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
            S+R LRVGE +R A+  ++      D  +S  +I++ EV MS DL++ATVY+ +PL   
Sbjct: 16  GSQRQLRVGELIRHAISDILSQGGVHDDTLSGHIITVPEVRMSPDLKLATVYV-MPLGGH 74

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             D VI+AL  N KF+RG +   + NL++ P+LRFR D       ++  L+  P +
Sbjct: 75  DTDAVIAALAHNKKFLRGEVAHRV-NLKFAPDLRFRADERFDEAERIEKLLRTPAV 129


>gi|302381333|ref|YP_003817156.1| ribosome-binding factor A [Brevundimonas subvibrioides ATCC 15264]
 gi|302191961|gb|ADK99532.1| ribosome-binding factor A [Brevundimonas subvibrioides ATCC 15264]
          Length = 147

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 16/136 (11%)

Query: 1   MKNKNPKN-----SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRV 55
           M NK  K+     S+R LR  E +R AL+ V+  NE +D  +    ++++EV +S DL+ 
Sbjct: 1   MANKKSKSTAGLVSQRQLRASEMIRHALVEVMRENEIRDPALIGVSVTVTEVRLSPDLKH 60

Query: 56  ATVYISLPLDVS---------PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
           AT ++  PL             D ++ ALN + KF+RG +GR + ++R+ P+LRFR+D S
Sbjct: 61  ATCFVE-PLGAGIETSDTAGHIDEIVKALNTHAKFLRGALGRHI-DMRFTPDLRFRHDES 118

Query: 107 LQSYWKLNALMCLPKI 122
             +  +LN L+  P++
Sbjct: 119 FAAAERLNRLLDDPRV 134


>gi|91974712|ref|YP_567371.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB5]
 gi|123061509|sp|Q13EL9|RBFA_RHOPS RecName: Full=Ribosome-binding factor A
 gi|91681168|gb|ABE37470.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB5]
          Length = 136

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 3/128 (2%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
            K      S R LRVGE VR A+  ++      D ++   +I++ EV MS DL++ATVY+
Sbjct: 5   QKPTGQSESPRKLRVGELVRHAVAEILAQGGVHDPVLETHLITVPEVRMSPDLKLATVYV 64

Query: 61  SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
            +PL    ++ VI+AL  + +F+RG + R + NL+Y PE+RFR D       ++  L+  
Sbjct: 65  -MPLGGRDEKLVIAALEQHKRFLRGEVARRV-NLKYAPEIRFRIDERFAEAERIEKLLRT 122

Query: 120 PKIPVALE 127
           P +   LE
Sbjct: 123 PAVQKDLE 130


>gi|323136841|ref|ZP_08071922.1| ribosome-binding factor A [Methylocystis sp. ATCC 49242]
 gi|322398158|gb|EFY00679.1| ribosome-binding factor A [Methylocystis sp. ATCC 49242]
          Length = 142

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 71/110 (64%), Gaps = 3/110 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRV E VR A   ++   E  D ++ + V+++S V MS DL++AT+Y+ +PL    
Sbjct: 13  SQRMLRVAELVRHAFAQLLSRGEISDPVLEKHVVTVSRVKMSPDLKLATIYV-MPLGGKD 71

Query: 69  D-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  VISAL+ + +F+RG I   + NL++ PE+RFR D S  +  +++A++
Sbjct: 72  EPEVISALDRHKRFLRGEIAHEV-NLKFAPEIRFRIDDSFDAVSRIDAIL 120


>gi|254420363|ref|ZP_05034087.1| ribosome-binding factor A [Brevundimonas sp. BAL3]
 gi|196186540|gb|EDX81516.1| ribosome-binding factor A [Brevundimonas sp. BAL3]
          Length = 151

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 11/129 (8%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
           S+R LR GE +R AL+ ++   +  D  ++   ++++EV +S DL+ AT ++  PL    
Sbjct: 17  SQRQLRAGELIRHALVDILREEDIHDEALADVSVTVTEVRLSPDLKHATCFVE-PLGAGV 75

Query: 68  --------PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
                      +I ALN + KF+RG++GR L ++++ P+LRFR+D S  +   L+ L   
Sbjct: 76  EAAATTGHESEIIKALNVHAKFLRGQLGRRL-DMKFTPDLRFRHDESFDAASHLDRLFED 134

Query: 120 PKIPVALEK 128
           P++   LE+
Sbjct: 135 PRVRADLER 143


>gi|92115665|ref|YP_575394.1| ribosome-binding factor A [Nitrobacter hamburgensis X14]
 gi|122418983|sp|Q1QS63|RBFA_NITHX RecName: Full=Ribosome-binding factor A
 gi|91798559|gb|ABE60934.1| ribosome-binding factor A [Nitrobacter hamburgensis X14]
          Length = 137

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 7/124 (5%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K+     S+R LRV E VR A+  ++      D ++   +I++ EV MS DL++AT+Y+ 
Sbjct: 7   KDSTSGASQRQLRVAETVRHAIADILAQGHVHDPVLEGHLITVPEVRMSADLKLATIYV- 65

Query: 62  LPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +PL   D +   VI AL+ N KF+RG I R + NL++ P++RFR D       ++  L+ 
Sbjct: 66  MPLGGRDTTD--VIDALDHNRKFLRGEIARRV-NLKFAPDIRFRADERFDEAERIEKLLR 122

Query: 119 LPKI 122
            P +
Sbjct: 123 TPAV 126


>gi|90422005|ref|YP_530375.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB18]
 gi|122477505|sp|Q21C30|RBFA_RHOPB RecName: Full=Ribosome-binding factor A
 gi|90104019|gb|ABD86056.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB18]
          Length = 137

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 3/129 (2%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
            K ++P  S+R LRVGE VR A+  ++      D ++   +I++ EV MS DL++ATVY+
Sbjct: 6   QKAQSPGGSQRQLRVGEIVRHAVAELLSQGGVHDPVLEGHLITVPEVRMSPDLKLATVYV 65

Query: 61  SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
            +PL     D V+ AL  N  FIR  + R + NL++ P+LRFR D       ++  L+  
Sbjct: 66  -MPLGGRDTDVVLKALAANKPFIRTAVARRV-NLKFAPDLRFRIDERFDEAERIEKLLRT 123

Query: 120 PKIPVALEK 128
           P +   L++
Sbjct: 124 PGVQKDLQQ 132


>gi|114571585|ref|YP_758265.1| ribosome-binding factor A [Maricaulis maris MCS10]
 gi|122314885|sp|Q0AK66|RBFA_MARMM RecName: Full=Ribosome-binding factor A
 gi|114342047|gb|ABI67327.1| ribosome-binding factor A [Maricaulis maris MCS10]
          Length = 141

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 5/121 (4%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
           +K P  S+R LR GE VR AL+ +I   EF+D  +   +IS++EV  S DLRVA VY++ 
Sbjct: 9   SKGP--SQRQLRAGELVRHALVGIIAREEFRDPDLEGQMISVTEVRPSPDLRVAKVYVA- 65

Query: 63  PLDVSPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
           PL      ++ + LN    F+RGR+GR +  +++ PEL F  D S  +   ++ L+  P 
Sbjct: 66  PLGRGDSAKLAAGLNRCAAFLRGRLGREI-EMKFTPELHFHADNSFDTASHVDDLLNRPT 124

Query: 122 I 122
           +
Sbjct: 125 V 125


>gi|218507999|ref|ZP_03505877.1| ribosome-binding factor A [Rhizobium etli Brasil 5]
          Length = 89

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 57/80 (71%), Gaps = 2/80 (2%)

Query: 9  SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
          S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++ PL VS 
Sbjct: 10 SQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68

Query: 69 DR-VISALNCNIKFIRGRIG 87
             VI ALN + KFIRGR+G
Sbjct: 69 HSIVIEALNRHAKFIRGRLG 88


>gi|86747727|ref|YP_484223.1| ribosome-binding factor A [Rhodopseudomonas palustris HaA2]
 gi|123004688|sp|Q2J2J8|RBFA_RHOP2 RecName: Full=Ribosome-binding factor A
 gi|86570755|gb|ABD05312.1| ribosome-binding factor A [Rhodopseudomonas palustris HaA2]
          Length = 135

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K      S R LRVGE VR A+  ++      D ++   +I++ EV MS DL++ATVY+ 
Sbjct: 6   KKTGQSASPRKLRVGELVRHAVAEILSQGGVHDPVLETHLITVPEVRMSPDLKLATVYV- 64

Query: 62  LPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
           +PL    ++ V++AL  + +F+RG + R + NL+Y P+LRFR D       ++  L+  P
Sbjct: 65  MPLGGKDEKPVLAALEQHKRFLRGEVARRV-NLKYAPDLRFRIDERFAEAERIEKLLRTP 123

Query: 121 KI 122
            +
Sbjct: 124 AV 125


>gi|148556716|ref|YP_001264298.1| ribosome-binding factor A [Sphingomonas wittichii RW1]
 gi|166219409|sp|A5VCZ4|RBFA_SPHWW RecName: Full=Ribosome-binding factor A
 gi|148501906|gb|ABQ70160.1| ribosome-binding factor A [Sphingomonas wittichii RW1]
          Length = 132

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 2/128 (1%)

Query: 2   KNKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           +N+ P+  S R LRVGE+VR AL  +++  E  D +++  ++S++EV MS DLR ATV++
Sbjct: 3   RNETPEGRSVRLLRVGEQVRHALSDILMRGEVHDDVLASHMVSVTEVRMSPDLRHATVFV 62

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
              L    D VI AL  N  F++  + R + N +Y  +L+F  D S      ++ L+  P
Sbjct: 63  KPLLGGDEDIVIKALRTNTAFLQSEVARRV-NTKYAAKLKFLADESFDEGSHIDRLLRDP 121

Query: 121 KIPVALEK 128
            I   L++
Sbjct: 122 SIARDLDQ 129


>gi|209883659|ref|YP_002287516.1| ribosome-binding factor A [Oligotropha carboxidovorans OM5]
 gi|226723605|sp|B6JCS1|RBFA_OLICO RecName: Full=Ribosome-binding factor A
 gi|209871855|gb|ACI91651.1| ribosome-binding factor A [Oligotropha carboxidovorans OM5]
          Length = 141

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
           +R LRVGE +R A+  ++      D  ++  +I++ EV MS DL++ATVY+ +PL     
Sbjct: 18  QRQLRVGELIRHAMADILAQGGVHDDTLAGHIITVPEVRMSPDLKLATVYV-MPLGGHDT 76

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           + V++AL  N KF+RG +   + NL++ PELRFR D       ++  L+  P +
Sbjct: 77  EAVLAALAHNKKFLRGEVAHRV-NLKFAPELRFRVDERFDEAERIEKLLRTPAV 129


>gi|315497231|ref|YP_004086035.1| ribosome-binding factor a [Asticcacaulis excentricus CB 48]
 gi|315415243|gb|ADU11884.1| ribosome-binding factor A [Asticcacaulis excentricus CB 48]
          Length = 156

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 12/124 (9%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--- 65
           S+R LR GE VR AL+ ++   E  D  +    I+I+EV  S DLR ATV++  PL    
Sbjct: 19  SQRQLRAGELVRHALVEILREEELHDEALQGVSITITEVRCSPDLRHATVFVE-PLGAGL 77

Query: 66  ----VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               +S D++   I ALN + KF+RG +GR + ++++ P+LRF +D S     +++AL  
Sbjct: 78  GGVTISKDKIAPAIEALNRHAKFLRGILGRMI-DMKFTPDLRFLHDESFNEAARIDALFM 136

Query: 119 LPKI 122
            P +
Sbjct: 137 RPDV 140


>gi|188582063|ref|YP_001925508.1| ribosome-binding factor A [Methylobacterium populi BJ001]
 gi|259552026|sp|B1ZDQ7|RBFA_METPB RecName: Full=Ribosome-binding factor A
 gi|179345561|gb|ACB80973.1| ribosome-binding factor A [Methylobacterium populi BJ001]
          Length = 145

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 7/122 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R  RV E VR AL  V+   + QD ++   V+++ EV MS DL++AT Y+ +PL   D
Sbjct: 11  SQRQQRVAELVRHALAEVLQRGDIQDPVLGSHVVTVPEVRMSPDLKLATAYV-MPLGGQD 69

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
            +P  VI+AL  + K +R  + R + NL+Y PELRFR D +     +++ L+   K+   
Sbjct: 70  EAP--VIAALERHKKILRQEVARRV-NLKYAPELRFRRDETFDEAARIDQLLRSEKVQRD 126

Query: 126 LE 127
           LE
Sbjct: 127 LE 128


>gi|307942747|ref|ZP_07658092.1| ribosome-binding factor A [Roseibium sp. TrichSKD4]
 gi|307773543|gb|EFO32759.1| ribosome-binding factor A [Roseibium sp. TrichSKD4]
          Length = 136

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 5/115 (4%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           K P  S+R LRVGE VR  L  ++   EFQD  +   +I++ EV M+ DLR+AT  + +P
Sbjct: 10  KGP--SQRQLRVGETVRKELSDILTRGEFQDPALEGAIITVPEVRMTPDLRLATCLV-MP 66

Query: 64  LDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           L     ++V +ALN + K++RG++ R L  ++Y+P+LRF  DT      ++ +L+
Sbjct: 67  LGGGDGEKVAAALNKSAKYLRGQVSRRL-TMKYMPDLRFVLDTRFDDDDRIGSLL 120


>gi|170740828|ref|YP_001769483.1| ribosome-binding factor A [Methylobacterium sp. 4-46]
 gi|259552032|sp|B0UL49|RBFA_METS4 RecName: Full=Ribosome-binding factor A
 gi|168195102|gb|ACA17049.1| ribosome-binding factor A [Methylobacterium sp. 4-46]
          Length = 139

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 7/117 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R  RV E VR A+  V+   + QD ++SR VI++ EV MS DL++AT Y+ +PL   D
Sbjct: 11  SQRQQRVAELVRHAIAEVLSRGDLQDPVLSRHVITVPEVRMSPDLKLATAYV-MPLGGQD 69

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            +P  V+ AL  N K +R  + R + NL++ PELRFR D +     +++ L+   K+
Sbjct: 70  EAP--VLEALERNRKALRQEVARRV-NLKFAPELRFRRDETFDEAARIDRLLRSEKV 123


>gi|217978440|ref|YP_002362587.1| ribosome-binding factor A [Methylocella silvestris BL2]
 gi|254789756|sp|B8EIA6|RBFA_METSB RecName: Full=Ribosome-binding factor A
 gi|217503816|gb|ACK51225.1| ribosome-binding factor A [Methylocella silvestris BL2]
          Length = 155

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 76/126 (60%), Gaps = 3/126 (2%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
            +  + S+R LRV E VR A+  ++  ++  D  +   VI++ +V MS DL++ATVY+ +
Sbjct: 7   QQGGQPSQRMLRVAELVRHAMSELLTRSDINDPALEGKVITVPDVRMSPDLKLATVYV-M 65

Query: 63  PLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
           PL       V++AL+ + K +RG I R + +LR+ P++RF+ D   +   K++AL+  PK
Sbjct: 66  PLGGENVTEVLAALDRHKKLLRGEIARRV-SLRFAPDVRFKADPGFEYSGKIDALLSSPK 124

Query: 122 IPVALE 127
           +   LE
Sbjct: 125 VKQDLE 130


>gi|295687490|ref|YP_003591183.1| ribosome-binding factor A [Caulobacter segnis ATCC 21756]
 gi|295429393|gb|ADG08565.1| ribosome-binding factor A [Caulobacter segnis ATCC 21756]
          Length = 148

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 7/119 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
           S+R LR GE +R AL+ ++   E QD  +    +++SEV MS DL+ A  ++  PL    
Sbjct: 16  SQRQLRAGELIRHALVEILREEELQDEALHNISVTVSEVRMSPDLKHAVCFVE-PLGAGL 74

Query: 68  ----PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
                  VI  LN   KF+RGR+GRS+ ++++ P+L+F +D S  +   ++ L   PK+
Sbjct: 75  TGEDTTEVIKGLNRVSKFLRGRLGRSI-DMKFTPDLKFIHDESFGTAAYMDKLFLDPKV 132


>gi|94497013|ref|ZP_01303587.1| ribosome-binding factor A [Sphingomonas sp. SKA58]
 gi|94423689|gb|EAT08716.1| ribosome-binding factor A [Sphingomonas sp. SKA58]
          Length = 133

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 1/122 (0%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M N+    S R LRVGE+VR  L  ++   +  D ++S  V+S++EV MS DLR ATV+I
Sbjct: 1   MSNQPEGPSVRLLRVGEQVRHVLSEILQRGDVHDDVLSSHVVSVTEVRMSPDLRHATVFI 60

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
              L    D V+ AL  N  +++  +   +R L+Y  +L+F  D S      ++ L+  P
Sbjct: 61  KSLLGQDEDAVLKALRTNTAYLQREVAHRIR-LKYAAKLKFLSDESFDEGSHIDKLLRDP 119

Query: 121 KI 122
           K+
Sbjct: 120 KV 121


>gi|146337228|ref|YP_001202276.1| ribosome-binding factor A [Bradyrhizobium sp. ORS278]
 gi|166218424|sp|A4YJF0|RBFA_BRASO RecName: Full=Ribosome-binding factor A
 gi|146190034|emb|CAL74026.1| Ribosome-binding factor A [Bradyrhizobium sp. ORS278]
          Length = 138

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
            S+R LRV E VR A+  ++      D  +   +I++ EV MS DL++AT+YI +PL   
Sbjct: 14  GSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLKLATIYI-MPLGGR 72

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             D V++AL  N KF+RG + R + NL++ P++RFR D       ++  L+  P +
Sbjct: 73  DTDVVLAALERNKKFLRGEVARRV-NLKFAPDIRFRVDERFDEAERIEKLLRTPAV 127


>gi|87200501|ref|YP_497758.1| ribosome-binding factor A [Novosphingobium aromaticivorans DSM
           12444]
 gi|123488757|sp|Q2G5E9|RBFA_NOVAD RecName: Full=Ribosome-binding factor A
 gi|87136182|gb|ABD26924.1| ribosome-binding factor A [Novosphingobium aromaticivorans DSM
           12444]
          Length = 135

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 2   KNKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           +  +P+  S R L+VGE+VR  L  ++   E  D ++S   +S++EV MS DLR ATV+I
Sbjct: 4   QQTSPETRSVRLLKVGEQVRHILSELLARQEVHDDVLSAHTVSVTEVRMSPDLRHATVFI 63

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
              L    D V+ AL  N  F +  + + LR L+Y   L+F  D S     K+  L+  P
Sbjct: 64  KALLGEDEDLVLKALRTNTAFFQREVAQRLR-LKYAARLKFLADESFDVASKIETLLADP 122

Query: 121 KI 122
           K+
Sbjct: 123 KV 124


>gi|220924487|ref|YP_002499789.1| ribosome-binding factor A [Methylobacterium nodulans ORS 2060]
 gi|259552023|sp|B8IEB4|RBFA_METNO RecName: Full=Ribosome-binding factor A
 gi|219949094|gb|ACL59486.1| ribosome-binding factor A [Methylobacterium nodulans ORS 2060]
          Length = 135

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 7/117 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           ++R  RV E VR A+  V+   + QD ++SR VI++ EV MS DL++AT Y+ +PL   D
Sbjct: 11  TQRQQRVAELVRHAIAEVLSRGDLQDPVLSRHVITVPEVRMSPDLKLATAYV-MPLGGED 69

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             P  VI AL  N K +R  + R + NL++ P+LRFR D +     +++ L+   K+
Sbjct: 70  EQP--VIEALERNRKVLRQEVARRV-NLKFAPDLRFRRDETFDEAARIDRLLRSDKV 123


>gi|148259246|ref|YP_001233373.1| ribosome-binding factor A [Acidiphilium cryptum JF-5]
 gi|326402399|ref|YP_004282480.1| ribosome-binding factor A [Acidiphilium multivorum AIU301]
 gi|172047759|sp|A5FV22|RBFA_ACICJ RecName: Full=Ribosome-binding factor A
 gi|146400927|gb|ABQ29454.1| ribosome-binding factor A [Acidiphilium cryptum JF-5]
 gi|325049260|dbj|BAJ79598.1| ribosome-binding factor A [Acidiphilium multivorum AIU301]
          Length = 140

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R  RV E++R  L  +    EF+D  ++   I+++EV MS DL+ ATV++S       
Sbjct: 18  SQRQRRVAEDLRHRLAELFARTEFRDPELAGVHITVAEVRMSPDLKHATVFVSRLGATDI 77

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           DR + AL     F+RG IG  LR +++VP+L F+ D +L    ++N L+  P++
Sbjct: 78  DRYLPALKRIAPFLRGEIGHGLR-MKFVPDLHFQPDHALDEATRINELLHRPEV 130


>gi|312112865|ref|YP_004010461.1| ribosome-binding factor A [Rhodomicrobium vannielii ATCC 17100]
 gi|311217994|gb|ADP69362.1| ribosome-binding factor A [Rhodomicrobium vannielii ATCC 17100]
          Length = 128

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 5/121 (4%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
           +K P  S+R LR GE +R AL  +    + +D  +   +I+++EV +S DL+ ATV+ S 
Sbjct: 7   SKGP--SQRQLRAGELLRHALAEIFRLEDIEDDELKGQLITVAEVRVSPDLKHATVFAS- 63

Query: 63  PLDVSPDRVIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
            L   P  VI+ ALN + +F+RG + R +  L+YVPEL FR D +L +  +++ L+  P 
Sbjct: 64  ALGGKPGDVIAKALNRHARFLRGELARRI-ELKYVPELVFRADHALDAAERIDELLRSPD 122

Query: 122 I 122
           +
Sbjct: 123 V 123


>gi|296285007|ref|ZP_06863005.1| ribosome-binding factor A [Citromicrobium bathyomarinum JL354]
          Length = 137

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           + S R L+VGE VR  L  ++   E  D  +S   +S++EV M+ DL+ A+VY+   L  
Sbjct: 10  QQSVRVLKVGERVRHILSELLTRGEVHDETLSAHSVSVTEVKMTPDLKHASVYVKPLLGE 69

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             D V+ AL  N  F +  + + L  L++ P+L+FR D S +   ++  L+  PK+
Sbjct: 70  DEDVVVKALRTNTAFFQREVAKRL-GLKFAPKLQFRPDESFEEADRIERLLNDPKV 124


>gi|209966180|ref|YP_002299095.1| ribosome-binding factor A [Rhodospirillum centenum SW]
 gi|209959646|gb|ACJ00283.1| ribosome-binding factor A [Rhodospirillum centenum SW]
          Length = 178

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
            K  N   S+R LRVGEE+R AL  ++   +F+D  +    ++++EV +S DL+ AT ++
Sbjct: 8   TKPGNTGPSQRQLRVGEEIRHALADILRRGDFRDPGLQDVNVTVTEVRVSPDLKNATAFV 67

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
            +PL      VI+ALN    F R +I  ++R L++ P + F+ DTS     +++ L+  P
Sbjct: 68  -MPLGGGHPEVIAALNHAAPFFRAQIAHAVR-LQHAPRIGFQEDTSFAYADRIDRLLHDP 125

Query: 121 KI 122
            +
Sbjct: 126 AV 127


>gi|16124293|ref|NP_418857.1| ribosome-binding factor A [Caulobacter crescentus CB15]
 gi|221232975|ref|YP_002515411.1| ribosome-binding factor A [Caulobacter crescentus NA1000]
 gi|20978655|sp|Q9AC30|RBFA_CAUCR RecName: Full=Ribosome-binding factor A
 gi|254789739|sp|B8GWZ3|RBFA_CAUCN RecName: Full=Ribosome-binding factor A
 gi|13421129|gb|AAK22025.1| ribosome-binding factor A [Caulobacter crescentus CB15]
 gi|220962147|gb|ACL93503.1| ribosome-binding factor A [Caulobacter crescentus NA1000]
          Length = 149

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 7/119 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
           S+R LR GE +R AL+ ++   E QD  +    +++SEV MS DL+ A  ++  PL    
Sbjct: 16  SQRQLRAGELIRHALVEILREEELQDEALQNISVTVSEVRMSPDLKHAICFVE-PLGAGL 74

Query: 68  ----PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
                  +I  LN   KF+RGR+GRS+ ++++ P+L+F +D S  +   ++ L   P++
Sbjct: 75  TGQDTTDIIKGLNRVSKFLRGRLGRSI-DMKFTPDLKFIHDESFGTAAYMDKLFLDPRV 132


>gi|332188278|ref|ZP_08390005.1| ribosome-binding factor A [Sphingomonas sp. S17]
 gi|332011674|gb|EGI53752.1| ribosome-binding factor A [Sphingomonas sp. S17]
          Length = 135

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 2/129 (1%)

Query: 1   MKNKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY 59
           ++ KNP   S R LRVGE+VR  L  ++   +  D  +++ ++S++EV MS DLR ATV+
Sbjct: 2   VQAKNPAEPSVRLLRVGEQVRHILSEILARGDVHDETLAKHMVSVTEVRMSPDLRHATVF 61

Query: 60  ISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
           +   L    + VI AL  N  +++  +   ++ ++Y  +L+F  D S      +++L+  
Sbjct: 62  VKPLLGKDEEVVIKALRTNTAYLQREVAHRVK-MKYAAKLKFLADESFDEGSHIDSLLRS 120

Query: 120 PKIPVALEK 128
           PK+   LE+
Sbjct: 121 PKVSQDLEE 129


>gi|296448275|ref|ZP_06890169.1| ribosome-binding factor A [Methylosinus trichosporium OB3b]
 gi|296254227|gb|EFH01360.1| ribosome-binding factor A [Methylosinus trichosporium OB3b]
          Length = 129

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 3/117 (2%)

Query: 13  LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPDRV 71
           LRV E VR +L  ++   E  D ++   V+++S V MS DL++ATVY+ +PL     + V
Sbjct: 2   LRVAELVRHSLAQMLSRGEIVDPVLETHVVTVSRVAMSPDLKLATVYV-MPLGGKDGEEV 60

Query: 72  ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
           + A   + KF+RG I   + NL++ PE+RFR D S  +  +++AL+   ++   LE 
Sbjct: 61  VRAFERHKKFLRGEIAHHV-NLKFAPEVRFRIDDSFDNVARIDALLNSERVRRDLEH 116


>gi|218530873|ref|YP_002421689.1| ribosome-binding factor A [Methylobacterium chloromethanicum CM4]
 gi|259552017|sp|B7KQJ7|RBFA_METC4 RecName: Full=Ribosome-binding factor A
 gi|218523176|gb|ACK83761.1| ribosome-binding factor A [Methylobacterium chloromethanicum CM4]
          Length = 145

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 7/122 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           ++R  RV E +R AL  V+   + QD ++   V+++ EV MS DL++AT Y+ +PL   D
Sbjct: 11  TQRQQRVAELIRHALAEVLQRGDIQDPVLGSHVVTVPEVRMSPDLKLATAYV-MPLGGQD 69

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
            +P  VI+AL  + K +R  + R + NL++ P+LRFR D +     +++ L+   K+   
Sbjct: 70  EAP--VIAALERHKKILRQEVARRV-NLKFAPDLRFRRDETFDEAARIDQLLRSEKVQRD 126

Query: 126 LE 127
           LE
Sbjct: 127 LE 128


>gi|163852115|ref|YP_001640158.1| ribosome-binding factor A [Methylobacterium extorquens PA1]
 gi|240139444|ref|YP_002963919.1| ribosome-binding factor A [Methylobacterium extorquens AM1]
 gi|254561859|ref|YP_003068954.1| ribosome-binding factor A [Methylobacterium extorquens DM4]
 gi|259552020|sp|A9W681|RBFA_METEP RecName: Full=Ribosome-binding factor A
 gi|163663720|gb|ABY31087.1| ribosome-binding factor A [Methylobacterium extorquens PA1]
 gi|240009416|gb|ACS40642.1| ribosome-binding factor A [Methylobacterium extorquens AM1]
 gi|254269137|emb|CAX25101.1| ribosome-binding factor A [Methylobacterium extorquens DM4]
          Length = 145

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 7/122 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           ++R  RV E +R AL  V+   + QD ++   V+++ EV MS DL++AT Y+ +PL   D
Sbjct: 11  TQRQQRVAELIRHALAEVLQRGDIQDPVLGSHVVTVPEVRMSPDLKLATAYV-MPLGGQD 69

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
            +P  VI+AL  + K +R  + R + NL++ P+LRFR D +     +++ L+   K+   
Sbjct: 70  EAP--VIAALERHKKILRQEVARRV-NLKFAPDLRFRRDETFDEAARIDQLLRSEKVQRD 126

Query: 126 LE 127
           LE
Sbjct: 127 LE 128


>gi|148251682|ref|YP_001236267.1| ribosome-binding factor A [Bradyrhizobium sp. BTAi1]
 gi|166218423|sp|A5E867|RBFA_BRASB RecName: Full=Ribosome-binding factor A
 gi|146403855|gb|ABQ32361.1| ribosome-binding factor A [Bradyrhizobium sp. BTAi1]
          Length = 138

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
            S+R LRV E VR A+  ++      D  +   +I++ EV MS DL++AT+YI +PL   
Sbjct: 14  GSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLKLATIYI-MPLGGR 72

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             + V++AL  N KF+RG I   + NL++ P++RFR D       ++  L+  P +
Sbjct: 73  DTEIVLAALERNKKFLRGEIAHRV-NLKFAPDIRFRADERFDEAERIEKLLRTPAV 127


>gi|170750124|ref|YP_001756384.1| ribosome-binding factor A [Methylobacterium radiotolerans JCM 2831]
 gi|259552029|sp|B1LWZ6|RBFA_METRJ RecName: Full=Ribosome-binding factor A
 gi|170656646|gb|ACB25701.1| ribosome-binding factor A [Methylobacterium radiotolerans JCM 2831]
          Length = 142

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 7/112 (6%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP---LD 65
           S+R  RV E VR AL  V+   + QD ++   V+++ EV MS DL++AT Y+ +P   LD
Sbjct: 11  SQRQQRVAELVRHALAEVLQRGDIQDPVLGTHVVTVPEVRMSPDLKLATAYV-MPLGGLD 69

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +P  VI+AL  + K +R  + R + NL++ PELRFR D +     +++ L+
Sbjct: 70  EAP--VIAALERHRKVLRQAVARRV-NLKFAPELRFRRDETFDEAARIDRLL 118


>gi|85710525|ref|ZP_01041589.1| ribosome-binding factor A [Erythrobacter sp. NAP1]
 gi|85687703|gb|EAQ27708.1| ribosome-binding factor A [Erythrobacter sp. NAP1]
          Length = 142

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           + S R L+VGE VR  L  ++   E  D ++S   I+++EV M+ DLR AT Y+   L  
Sbjct: 11  QQSVRVLKVGERVRHILSELLARQEVHDEVVSASNIAVTEVRMTPDLRHATAYVKPLLAA 70

Query: 67  SPD----RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            P      V+ AL  N  F++  + + L  L++ P+L+FR D S     ++ AL+  PK+
Sbjct: 71  GPKISDADVVHALRQNTAFLQREVAKRL-GLKFAPKLKFRSDESFAEADRIEALLRDPKV 129


>gi|294011607|ref|YP_003545067.1| ribosome-binding factor A [Sphingobium japonicum UT26S]
 gi|292674937|dbj|BAI96455.1| ribosome-binding factor A [Sphingobium japonicum UT26S]
          Length = 133

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M   N   S R LRVGE+VR  L  ++   +  D +++  V+S++EV MS DLR ATV+I
Sbjct: 1   MPAPNEGPSVRLLRVGEQVRHVLSDILQRGDVHDDVLASHVVSVTEVRMSPDLRHATVFI 60

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
              L      V+ AL  N  F++  +   +R L+Y  +L+F  D S      ++ L+  P
Sbjct: 61  KSLLGQDEAAVLKALRTNTAFLQREVATRIR-LKYAAKLKFLADESFDEGSHIDKLLRDP 119

Query: 121 KIPVALEK 128
           K+   LE+
Sbjct: 120 KVARDLEQ 127


>gi|118590501|ref|ZP_01547903.1| ribosome-binding factor A [Stappia aggregata IAM 12614]
 gi|118436964|gb|EAV43603.1| ribosome-binding factor A [Stappia aggregata IAM 12614]
          Length = 170

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 3/121 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
           S+R LRVGE VR  L  ++    F D  +   +++I EV M+ DLR+AT  + +PL  V+
Sbjct: 42  SQRQLRVGETVRKELSDILTRGRFSDPDLDGVIVTIPEVRMTPDLRLATCLV-MPLGGVN 100

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
            + V  ALN + K++RG++ R L  ++Y+P+LRF  DT      ++  L+  P++   L+
Sbjct: 101 AENVEKALNRSAKYLRGQVSRRL-TMKYMPDLRFVLDTRFDDDDRIGTLLHSPEVSRDLD 159

Query: 128 K 128
           +
Sbjct: 160 E 160


>gi|316931580|ref|YP_004106562.1| ribosome-binding factor A [Rhodopseudomonas palustris DX-1]
 gi|315599294|gb|ADU41829.1| ribosome-binding factor A [Rhodopseudomonas palustris DX-1]
          Length = 137

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 3/128 (2%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
            K+     S R+LRVGE VR A+  ++      D ++   ++++ EV MS DL++AT+Y+
Sbjct: 6   QKSSPSGGSTRSLRVGELVRHAVAEILSQGGVHDPVLESHLVTVPEVRMSPDLKLATIYV 65

Query: 61  SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
            +PL    ++ V+ AL  + +F+RG I   +  L++ P++RFR D       +++ L+  
Sbjct: 66  -MPLGGRDEKLVLDALEHHKRFLRGEIAHRV-ALKFAPDIRFRIDERFAEAERIDRLLRS 123

Query: 120 PKIPVALE 127
           P +   LE
Sbjct: 124 PAVQKDLE 131


>gi|83313169|ref|YP_423433.1| ribosome-binding factor A [Magnetospirillum magneticum AMB-1]
 gi|123540595|sp|Q2VZV1|RBFA_MAGMM RecName: Full=Ribosome-binding factor A
 gi|82948010|dbj|BAE52874.1| Ribosome-binding factor A [Magnetospirillum magneticum AMB-1]
          Length = 142

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 74/117 (63%), Gaps = 7/117 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGEE+R A+  VI   EF+D  +    I+++EV +S DLR ATV++ +PL   D
Sbjct: 9   SQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFV-VPLGGGD 67

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           V+P  +++ L     F+R  I R +  LR VP+L F+ DT+  +  ++++++  P++
Sbjct: 68  VAP--ILAGLKRAKAFLRHEISRMV-ELRAVPDLWFQEDTTFDTASRIDSILNSPEV 121


>gi|23016106|ref|ZP_00055866.1| COG0858: Ribosome-binding factor A [Magnetospirillum
           magnetotacticum MS-1]
          Length = 142

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 74/117 (63%), Gaps = 7/117 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGEE+R A+  VI   EF+D  +    I+++EV +S DLR ATV++ +PL   D
Sbjct: 9   SQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFV-VPLGGGD 67

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           V+P  +++ L     F+R  I R +  LR VP+L F+ DT+  +  ++++++  P++
Sbjct: 68  VAP--ILAGLKRAKAFLRHEISRMV-ELRAVPDLWFQEDTTFDTASRIDSILNSPEV 121


>gi|114329055|ref|YP_746212.1| ribosome-binding factor A [Granulibacter bethesdensis CGDNIH1]
 gi|122325999|sp|Q0BPG3|RBFA_GRABC RecName: Full=Ribosome-binding factor A
 gi|114317229|gb|ABI63289.1| ribosome-binding factor A [Granulibacter bethesdensis CGDNIH1]
          Length = 138

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 3/119 (2%)

Query: 6   PKN--SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           PK   S+R LRV EE+R  L  V    EF+D  ++    +I+EV +S DL+ ATV+IS  
Sbjct: 15  PKGAPSQRQLRVAEEIRHVLAGVFARQEFRDPELATTTFTINEVRISPDLKHATVFISRL 74

Query: 64  LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
                + ++  L     ++RG + + +R LRY PEL F+ D++L+    +++L+  P++
Sbjct: 75  GSSEIEPLLPNLKRVATYLRGEVAKVMR-LRYAPELHFQPDSALEYAMHVDSLLRRPEV 132


>gi|296534730|ref|ZP_06897109.1| ribosome-binding factor A [Roseomonas cervicalis ATCC 49957]
 gi|296264943|gb|EFH11189.1| ribosome-binding factor A [Roseomonas cervicalis ATCC 49957]
          Length = 144

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           S+R LRV EEVR AL  V +  EF D  +S   I+++EV  S DL+  T ++S L   V+
Sbjct: 12  SQRMLRVAEEVRHALSAVFMRGEFHDPDLSGRHITVTEVRASPDLKHMTCFVSALGRPVT 71

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            +  +  L     F+R ++ R++R L++ PE+ F+ DT+L    K++A+M  P++
Sbjct: 72  KEE-LQGLRRVQPFLRTQVARAVR-LKFAPEMHFQPDTALDYAMKIDAVMRRPEV 124


>gi|254500779|ref|ZP_05112930.1| ribosome-binding factor A [Labrenzia alexandrii DFL-11]
 gi|222436850|gb|EEE43529.1| ribosome-binding factor A [Labrenzia alexandrii DFL-11]
          Length = 137

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 3/120 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
           S+R L+VGE VR  L  +     F D  +   +I+I EV M+ DLR+AT  + +PL   +
Sbjct: 13  SQRQLKVGETVRKELSDIFTRGRFSDPDLDGVIITIPEVRMTPDLRLATCLV-MPLGGAN 71

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
            ++V  ALN + K++RG++ R L  ++Y+P+LRF  DT      ++  L+  P +   L+
Sbjct: 72  AEKVEKALNRSAKYLRGQVSRRL-TMKYMPDLRFVLDTRFDDDDRIGTLLHSPDVARDLD 130


>gi|83945012|ref|ZP_00957378.1| ribosome-binding factor A [Oceanicaulis alexandrii HTCC2633]
 gi|83851794|gb|EAP89649.1| ribosome-binding factor A [Oceanicaulis alexandrii HTCC2633]
          Length = 140

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
            S+R LR GE VR A+  +I      D  ++   ++I+E  +S DLR ATVY+ L     
Sbjct: 17  QSQRQLRAGELVRRAVSDIIREGRVHDPHVNTAAVTITEARVSPDLRHATVYVDLLGGGD 76

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
            + V +ALN    FI+  +GR +  L++ P+LRF  D  +    +++AL+  P +   LE
Sbjct: 77  REAVATALNHAAGFIQRELGRQI-ELKFTPKLRFAVDDRIDDVREVDALLDRPSVKRDLE 135


>gi|307293336|ref|ZP_07573182.1| ribosome-binding factor A [Sphingobium chlorophenolicum L-1]
 gi|306881402|gb|EFN12618.1| ribosome-binding factor A [Sphingobium chlorophenolicum L-1]
          Length = 133

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M   N   S R LRVGE+VR  L  ++   +  D ++   V+S++EV MS DLR ATV+I
Sbjct: 1   MPAPNEGPSVRLLRVGEQVRHILSDILQRGDVHDDVLVSHVVSVTEVRMSPDLRHATVFI 60

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
              L    + V+ AL  N  +++  +   +R L+Y  +L+F  D S      ++ L+  P
Sbjct: 61  KSLLGQDEEAVLKALRTNTAYLQREVATRIR-LKYAAKLKFLADESFDEGTHIDKLLRDP 119

Query: 121 KIPVALEK 128
           K+   L++
Sbjct: 120 KVARDLDQ 127


>gi|89056527|ref|YP_511978.1| ribosome-binding factor A [Jannaschia sp. CCS1]
 gi|123285867|sp|Q28K09|RBFA_JANSC RecName: Full=Ribosome-binding factor A
 gi|88866076|gb|ABD56953.1| ribosome-binding factor A [Jannaschia sp. CCS1]
          Length = 143

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 7/116 (6%)

Query: 2   KNKN-PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           KN+N P  S+R LRVGE +R  L  V+   +  D  ++   I+++EV  S DL++ATVY+
Sbjct: 5   KNQNGPSKSQRQLRVGELIRRTLSTVLARADVHDPALNAMSITVAEVRTSSDLKIATVYV 64

Query: 61  SLPLDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
            +PL  S  D  I AL  N   +R  +G+ L+ L+Y+P+LRF  D   Q++ +++A
Sbjct: 65  -MPLGGSGKDEAIEALKRNKGELRRLLGKDLK-LKYLPDLRFVID---QTFDQMDA 115


>gi|103486106|ref|YP_615667.1| ribosome-binding factor A [Sphingopyxis alaskensis RB2256]
 gi|123078561|sp|Q1GVI8|RBFA_SPHAL RecName: Full=Ribosome-binding factor A
 gi|98976183|gb|ABF52334.1| ribosome-binding factor A [Sphingopyxis alaskensis RB2256]
          Length = 136

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K ++   S R LRVGE+VR  L  ++   +  D +++   +S++EV MS DLR ATV++ 
Sbjct: 4   KEQSEGPSVRVLRVGEQVRHVLSEILARGDVHDDVLATHPVSVTEVRMSPDLRHATVFVK 63

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
             L    + V+ A+  N  +++  +   +R ++Y  +L+F  D S      ++ L+  PK
Sbjct: 64  PLLGKDEEAVLKAMRTNTAYLQREVAHRIR-MKYAAKLKFLADDSFDEASHIDRLLRDPK 122

Query: 122 IPVALE 127
           +   LE
Sbjct: 123 VARDLE 128


>gi|84500520|ref|ZP_00998769.1| ribosome-binding factor A [Oceanicola batsensis HTCC2597]
 gi|84391473|gb|EAQ03805.1| ribosome-binding factor A [Oceanicola batsensis HTCC2597]
          Length = 134

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 3/108 (2%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           + N  P  S+R LRVGE +R AL  +++  +  D  ++R  I++ EV  S DL+VAT ++
Sbjct: 8   IHNDGPGPSQRQLRVGETIRRALSEILMRGDIHDPDLNRLSITVGEVRTSPDLKVATAFV 67

Query: 61  SLPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            LPL     D V+  L  N   +R  IG+ L  L++ P+LRFR D + 
Sbjct: 68  -LPLGGTGQDVVVDLLARNKGELRRMIGKKL-GLKFTPDLRFRVDDTF 113


>gi|84684345|ref|ZP_01012246.1| ribosome-binding factor A [Maritimibacter alkaliphilus HTCC2654]
 gi|84667324|gb|EAQ13793.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2654]
          Length = 136

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 68/114 (59%), Gaps = 6/114 (5%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
           N+    S+R LRVGE +R  L  V++  E  D  ++R  I++ EV  S DL++AT Y+ L
Sbjct: 7   NEGTGPSQRQLRVGELIRRTLSDVLMRGEIHDPDLNRMSITVGEVRTSPDLKIATAYV-L 65

Query: 63  PLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
           PL   +PD  I AL  N   +R  IG+ + NL++ P+LRF  D   +++ +++A
Sbjct: 66  PLGGKNPDEAIKALARNKHELRRFIGK-VTNLKFTPDLRFMID---ETFDQMDA 115


>gi|83950711|ref|ZP_00959444.1| ribosome-binding factor A [Roseovarius nubinhibens ISM]
 gi|83838610|gb|EAP77906.1| ribosome-binding factor A [Roseovarius nubinhibens ISM]
          Length = 131

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 6/110 (5%)

Query: 2   KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK    P  S+R LRVGE +R  L  V++  +  D  ++R  +++ EV  S DL++AT 
Sbjct: 3   KNKFHDGPGPSQRQLRVGELIRRTLSEVLMRGDIHDPELNRMSVTVGEVRTSPDLKIATA 62

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           Y+ LPL     D ++  L  N   +R  IGR L  L+Y PELRFR D + 
Sbjct: 63  YV-LPLGGKGQDVIVGLLARNQSELRRIIGRKL-GLKYAPELRFRLDQTF 110


>gi|326388035|ref|ZP_08209639.1| ribosome-binding factor A [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207536|gb|EGD58349.1| ribosome-binding factor A [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 133

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R L+VGE+VR  L  ++   +  D ++S   +S++EV MS DLR A V++   L    
Sbjct: 12  SVRLLKVGEQVRHILSELLSRQQVHDDVLSAHTVSVTEVRMSPDLRHAAVFVKSLLGADE 71

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           + V+ AL  N  F +  +   L+ L+Y  ++RF  D S     +++AL+  P++
Sbjct: 72  EIVLKALRTNTAFFQKEVAGRLK-LKYAAKIRFLPDESFDEANRIDALLADPRV 124


>gi|288959701|ref|YP_003450042.1| ribosome-binding factor A [Azospirillum sp. B510]
 gi|288912009|dbj|BAI73498.1| ribosome-binding factor A [Azospirillum sp. B510]
          Length = 190

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGEE+R AL  +    +F D  ++   ++++EV +S DL  ATV+ S       
Sbjct: 16  SQRQLRVGEELRHALADLFRRGDFHDPELASLNVTVTEVRISPDLSNATVFYSTLGGERM 75

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           +    AL     F+RG++ R + NLR+ P L F  DTS     ++++++  P++
Sbjct: 76  EEAQVALKRAAAFLRGQVARMV-NLRHAPTLSFEGDTSFDYAHRIDSILHSPEV 128


>gi|158421645|ref|YP_001522937.1| ribosome-binding factor A [Azorhizobium caulinodans ORS 571]
 gi|172048016|sp|A8IG22|RBFA_AZOC5 RecName: Full=Ribosome-binding factor A
 gi|158328534|dbj|BAF86019.1| ribosome-binding factor A [Azorhizobium caulinodans ORS 571]
          Length = 145

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 7/117 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGE VR AL   +   +  D  ++  +I++ EV MS DL++AT ++ +PL   D
Sbjct: 12  SQRMLRVGELVRHALADALQRGDHLDPALAGTIITVPEVRMSPDLKIATCFV-MPLGGKD 70

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           V+   VI  L  N K +R  + R +  L+ VP LRF  DTS     +++AL+  P +
Sbjct: 71  VNT--VIKLLAANQKLLRTEVARRV-ELKSVPSLRFLRDTSFDEGARIDALLRRPDV 124


>gi|182678032|ref|YP_001832178.1| ribosome-binding factor A [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|238691234|sp|B2IIJ6|RBFA_BEII9 RecName: Full=Ribosome-binding factor A
 gi|182633915|gb|ACB94689.1| ribosome-binding factor A [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 141

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRV E +R  L  ++  +   D ++   VI++ +V MS DL++AT ++ +PL    
Sbjct: 13  SQRMLRVAELIRHTLSDLLSRSIVNDPVLEGHVITVPDVRMSPDLKLATAFV-MPLGGKD 71

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            + VI AL+ + KF+R  I + + +LR+ P++RF+ D S     K++AL+  P++
Sbjct: 72  INSVIEALDRHKKFLRSEIAQRI-HLRFAPDIRFKADESFDYGDKIDALLASPQV 125


>gi|310817250|ref|YP_003965214.1| ribosome-binding factor A [Ketogulonicigenium vulgare Y25]
 gi|308755985|gb|ADO43914.1| ribosome-binding factor A [Ketogulonicigenium vulgare Y25]
          Length = 145

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 2   KNKNPKN------SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRV 55
           KN+ P +      S+R LRVGE +R  L  V+   E  D  + R  I++ EV  S DL+V
Sbjct: 3   KNRFPNDPAFNGPSQRQLRVGELIRRTLSSVLQRGEVHDPELQRTSITVGEVRTSPDLKV 62

Query: 56  ATVYISLPLDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           AT Y+ LPL     D V++AL  N   IR  IG  +  L++VP+LRF  D + 
Sbjct: 63  ATAYV-LPLGGGNADLVLAALRRNKSEIRHMIGHGM-TLKFVPDLRFEIDRTF 113


>gi|328545916|ref|YP_004306025.1| ribosome-binding factor A [polymorphum gilvum SL003B-26A1]
 gi|326415656|gb|ADZ72719.1| Ribosome-binding factor A [Polymorphum gilvum SL003B-26A1]
          Length = 117

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 13  LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRV 71
           +RVGE VR  L  ++   +  D  +   +I++ EV M+ DLR+A+  + +PL     +R+
Sbjct: 1   MRVGELVRKELSDILTRGQLADPDLDGVIITVPEVRMTPDLRLASCLV-MPLGGAHGERI 59

Query: 72  ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
           + ALN + K+IRG++ R L  L+Y+P+LRF  DT      ++  L+  P +   +E
Sbjct: 60  VKALNRSAKYIRGQVSRRL-TLKYMPDLRFVLDTRFDDDDRIGHLLHSPDVQRDIE 114


>gi|114799473|ref|YP_758849.1| ribosome-binding factor A [Hyphomonas neptunium ATCC 15444]
 gi|123323719|sp|Q0C5Z4|RBFA_HYPNA RecName: Full=Ribosome-binding factor A
 gi|114739647|gb|ABI77772.1| ribosome-binding factor A [Hyphomonas neptunium ATCC 15444]
          Length = 135

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 4/117 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LR GE VR AL  +I   +F+D  +S  ++++ EV  S DL+ A ++++   D S 
Sbjct: 12  SQRQLRAGEIVRHALAEIISREDFRDPDLSNVIVTVGEVRCSPDLKHANIFVTPLGDDSE 71

Query: 69  D---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           +   R+  AL     F+R R+GR +  L++ PEL F  D+S      ++ L+  P++
Sbjct: 72  EGRKRLADALTRAKGFLRTRLGREI-ELKFTPELHFIADSSYDEATAIDRLLNDPRV 127


>gi|144899453|emb|CAM76317.1| Ribosome-binding factor A [Magnetospirillum gryphiswaldense MSR-1]
          Length = 144

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 3/115 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           ++R LRVGEE+R  +  +I   E +D  ++   I+++EV +S DL+ ATV++ +PL    
Sbjct: 9   TQRQLRVGEELRHIIANIIERGEIRDPDLAGRAITVTEVRISPDLKNATVFV-VPLGGGE 67

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            + V+  L     FIR  + R + +LR  P+L F+ DTS      ++AL+  P++
Sbjct: 68  VETVVKGLKRARSFIRHEVARQV-DLRIAPDLFFQADTSFDEASHIDALLRSPQV 121


>gi|330991193|ref|ZP_08315146.1| Ribosome-binding factor A [Gluconacetobacter sp. SXCC-1]
 gi|329761779|gb|EGG78270.1| Ribosome-binding factor A [Gluconacetobacter sp. SXCC-1]
          Length = 138

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRV EEVR  L  +    EF+D  ++   I+++EV +S DL+ ATV+++       
Sbjct: 19  SQRQLRVAEEVRRVLAEIFARTEFRDPDLADVRITVTEVRISPDLKHATVFVARLGRSDV 78

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             ++ AL     F+R R+  +LR LR VP+L F+ DT+L    +++ ++  P++
Sbjct: 79  AELLPALKRVTPFLRTRLSHALR-LRGVPDLHFQPDTALDYAMEVDTMLRQPEV 131


>gi|162147161|ref|YP_001601622.1| ribosome-binding factor A [Gluconacetobacter diazotrophicus PAl 5]
 gi|182676540|sp|A9HF21|RBFA_GLUDA RecName: Full=Ribosome-binding factor A
 gi|161785738|emb|CAP55309.1| putative ribosome-binding factor A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 136

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           ++R LRVGEEVR  L  +    EF+D  +    I+++EV +S DL+ AT +++       
Sbjct: 19  TQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRISPDLKHATAFVARLGRSDV 78

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           + ++ AL     F+R R+   LR LR VPE+ F+ DT+L    +++AL+  P +
Sbjct: 79  ETLLPALKRVAPFLRSRLSTGLR-LRGVPEIHFQPDTALDYAMEVDALLRQPDV 131


>gi|209544217|ref|YP_002276446.1| ribosome-binding factor A [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531894|gb|ACI51831.1| ribosome-binding factor A [Gluconacetobacter diazotrophicus PAl 5]
          Length = 145

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           ++R LRVGEEVR  L  +    EF+D  +    I+++EV +S DL+ AT +++       
Sbjct: 28  TQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRISPDLKHATAFVARLGRSDV 87

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           + ++ AL     F+R R+   LR LR VPE+ F+ DT+L    +++AL+  P +
Sbjct: 88  ETLLPALKRVAPFLRSRLSTGLR-LRGVPEIHFQPDTALDYAMEVDALLRQPDV 140


>gi|149912793|ref|ZP_01901327.1| ribosome-binding factor A [Roseobacter sp. AzwK-3b]
 gi|149813199|gb|EDM73025.1| ribosome-binding factor A [Roseobacter sp. AzwK-3b]
          Length = 134

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 6/125 (4%)

Query: 2   KNKNPKN---SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK+      S+R LRVGE VR  L  +++  +  D  ++R  +++ EV +S DLR+AT 
Sbjct: 6   KNKSHDGQGPSQRQLRVGELVRRTLSDLLMRGDVHDPELNRMSVTVGEVRVSPDLRIATA 65

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           Y+ LPL     ++VI  L  N   +R  IG+ L +L+YVP+LRFR D +     +   + 
Sbjct: 66  YV-LPLGGDGQEQVIDLLARNRGELRRLIGKKL-DLKYVPDLRFRIDETFDRMDETRRMF 123

Query: 118 CLPKI 122
              K+
Sbjct: 124 ADEKV 128


>gi|85703968|ref|ZP_01035071.1| ribosome-binding factor A [Roseovarius sp. 217]
 gi|85671288|gb|EAQ26146.1| ribosome-binding factor A [Roseovarius sp. 217]
          Length = 131

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 6/112 (5%)

Query: 2   KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK    P  S+R LRVGE +R  L  V++  +  D  ++R  +++ EV  S DL++AT 
Sbjct: 3   KNKFHDGPGPSQRQLRVGELIRRTLSEVLMRGDIHDPDLNRISVTVGEVRTSSDLKIATA 62

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
           Y+ +PL     D +I+ L  N   +R  IG+ +  L+Y P+LRFR D +   
Sbjct: 63  YV-MPLGGEGQDDLIALLARNKHELRRMIGKKV-GLKYAPDLRFRLDETFDQ 112


>gi|149203493|ref|ZP_01880463.1| ribosome-binding factor A [Roseovarius sp. TM1035]
 gi|149143326|gb|EDM31365.1| ribosome-binding factor A [Roseovarius sp. TM1035]
          Length = 134

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 6/112 (5%)

Query: 2   KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK    P  S+R LRVGE +R  L  V++  +  D  ++R  +++ EV  S DL++AT 
Sbjct: 6   KNKFHDGPGPSQRQLRVGELIRRTLSEVLMRGDIHDPDLNRISVTVGEVRTSSDLKIATA 65

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
           Y+ +PL     D +I+ L  N   +R  IG+ +  L+Y P+LRFR D +   
Sbjct: 66  YV-MPLGGEGQDDLIALLARNKNELRRMIGKKV-GLKYAPDLRFRLDETFDQ 115


>gi|254477757|ref|ZP_05091143.1| ribosome-binding factor A [Ruegeria sp. R11]
 gi|214032000|gb|EEB72835.1| ribosome-binding factor A [Ruegeria sp. R11]
          Length = 131

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 3/106 (2%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
           N+    S+R LRVGE +R AL  +    +  D  ++R  I++ EV ++ DLR+AT Y+ L
Sbjct: 7   NEGAGPSQRQLRVGELIRRALSEIFTRGDIHDPDLNRMSITVGEVRVTSDLRIATAYV-L 65

Query: 63  PLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           PL     D ++  +  N   +R  IG+ L  L++ PELRF+ D + 
Sbjct: 66  PLGGKGQDEILKLMARNKGELRRMIGKKL-GLKFTPELRFQLDETF 110


>gi|332976851|gb|EGK13676.1| ribosome-binding factor A [Desmospora sp. 8437]
          Length = 119

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           RA RVGE+V+  L +V L +E +D  +    ++++ V MS DL+ A VYIS+  D    +
Sbjct: 5   RASRVGEQVKKELSYV-LQHEMKDPRVG--FVTVTAVEMSGDLQQAKVYISVLGDEEKKK 61

Query: 71  -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     F+R  IGR ++ LR+ PEL F++D S++    ++ L+
Sbjct: 62  ETLEGLEKAKGFLRTEIGRRVQ-LRHTPELIFKFDESIEHGQHISKLL 108


>gi|114766563|ref|ZP_01445519.1| ribosome-binding factor A [Pelagibaca bermudensis HTCC2601]
 gi|114541179|gb|EAU44231.1| ribosome-binding factor A [Roseovarius sp. HTCC2601]
          Length = 131

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 5   NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
            P  S+R LRVGE +R  L  V+   +  D  ++R  I++ EV +S DL+VAT Y+ +PL
Sbjct: 9   GPGPSQRQLRVGELIRRTLSEVLTRGDIHDPELNRLSITVGEVTVSPDLKVATAYV-VPL 67

Query: 65  DVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
               PD +   L  N   +R  + + L  L++ PE+RF+ D + 
Sbjct: 68  GGGKPDEMFDLLKRNKSELRRAVSKGL-TLKFAPEIRFKLDETF 110


>gi|86139376|ref|ZP_01057945.1| ribosome-binding factor A [Roseobacter sp. MED193]
 gi|85823879|gb|EAQ44085.1| ribosome-binding factor A [Roseobacter sp. MED193]
          Length = 131

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 9/118 (7%)

Query: 2   KNKNPKN---SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK+P+    S+R LRVGE +R  L  V+   E  D  ++R  I++ EV ++ DLR+AT 
Sbjct: 3   KNKSPEGRAPSQRQLRVGELIRRTLSEVLSRGELHDPELNRMSITVGEVRVTPDLRIATA 62

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
           Y+ LPL     D ++  L  N   +R   G+ L  ++Y P+LRF+ D    +Y +++A
Sbjct: 63  YV-LPLGGKGQDDLLKLLGRNKWELRTLAGKKL-GMKYTPDLRFQLDL---TYDQMDA 115


>gi|56698646|ref|YP_169023.1| ribosome-binding factor A [Ruegeria pomeroyi DSS-3]
 gi|61214678|sp|Q5LLT6|RBFA_SILPO RecName: Full=Ribosome-binding factor A
 gi|56680383|gb|AAV97049.1| ribosome-binding factor A [Ruegeria pomeroyi DSS-3]
          Length = 131

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 6/110 (5%)

Query: 2   KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK    P  S+R LRVGE +R  L  V+   +  D  ++R  I++ EV  S DL++AT 
Sbjct: 3   KNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDVHDPDLNRMSITVGEVRTSPDLKIATA 62

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           Y+ LPL     + V+  L+ N   +R  IG+ L  L++ P+LRFR D + 
Sbjct: 63  YV-LPLGGRGQEDVVQLLSRNKGELRRMIGKKL-GLKFTPDLRFRLDETF 110


>gi|110678026|ref|YP_681033.1| ribosome-binding factor A [Roseobacter denitrificans OCh 114]
 gi|123172936|sp|Q16CE6|RBFA_ROSDO RecName: Full=Ribosome-binding factor A
 gi|109454142|gb|ABG30347.1| ribosome-binding factor A [Roseobacter denitrificans OCh 114]
          Length = 143

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 6/110 (5%)

Query: 2   KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK    P  S+R LRVGE +R AL  V+   +  D  ++R  +++ EV  S DL++AT 
Sbjct: 6   KNKFHTGPGPSQRQLRVGETIRRALSDVLARGDVHDTDLNRLSVTVGEVRASPDLKIATA 65

Query: 59  YISLPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           Y+ LPL     D VI+ L  N   +R  + + L  L++ P+LRF+ D + 
Sbjct: 66  YV-LPLGGQGKDEVIALLARNKGELRRLVAKKL-TLKFAPDLRFQLDETF 113


>gi|58040016|ref|YP_191980.1| ribosome-binding factor A [Gluconobacter oxydans 621H]
 gi|62510968|sp|Q5FQM2|RBFA_GLUOX RecName: Full=Ribosome-binding factor A
 gi|58002430|gb|AAW61324.1| Ribosome-binding factor A [Gluconobacter oxydans 621H]
          Length = 142

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R LRV EEVR  L  +    EF+D  +    I+++EV +S D R AT +++       
Sbjct: 21  STRQLRVAEEVRRVLAELFARTEFRDPELLDVRITVTEVRISPDFRHATAFVTRLGRSDV 80

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           + ++ AL     F+R  + ++L NLR VPE+ F+ DT+L +  +L+ +M  P++
Sbjct: 81  EVLLPALKRVAPFLRTGLSKAL-NLRTVPEIHFQPDTALDNAMELDEIMRSPEV 133


>gi|163734260|ref|ZP_02141700.1| ribosome-binding factor A [Roseobacter litoralis Och 149]
 gi|161392268|gb|EDQ16597.1| ribosome-binding factor A [Roseobacter litoralis Och 149]
          Length = 140

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)

Query: 2   KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK    P  S+R LRVGE +R AL  V+   +  D  ++R  +++ EV +S DL++AT 
Sbjct: 3   KNKFHTGPGPSQRQLRVGETIRRALSDVLARGDVHDTDLNRLSVTVGEVRVSPDLKIATA 62

Query: 59  YISLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           Y+ LPL     D VI+ L  N   +R  + + L  L++ P+LRF+ D + 
Sbjct: 63  YV-LPLGGQGRDEVIALLARNKGELRRLVAKKL-TLKFAPDLRFQLDETF 110


>gi|225181386|ref|ZP_03734830.1| ribosome-binding factor A [Dethiobacter alkaliphilus AHT 1]
 gi|225167967|gb|EEG76774.1| ribosome-binding factor A [Dethiobacter alkaliphilus AHT 1]
          Length = 122

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 65/110 (59%), Gaps = 4/110 (3%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
           +RA RVGEE++  +   IL  E +D  ++  +IS+++V ++ DLR A ++IS L  +   
Sbjct: 4   QRAHRVGEEIKREVSS-ILRTEIKDPRVT-GLISVTDVAVTRDLRHAKLFISMLGSEEEQ 61

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              +SAL+  + FIR  IG+ +R LR+ PE+ F  D S+     +N ++ 
Sbjct: 62  QETLSALSRAVGFIRSEIGKRIR-LRHTPEISFHLDKSIAYGAHINKILA 110


>gi|83595111|ref|YP_428863.1| ribosome-binding factor A [Rhodospirillum rubrum ATCC 11170]
 gi|123525360|sp|Q2RMR9|RBFA_RHORT RecName: Full=Ribosome-binding factor A
 gi|83578025|gb|ABC24576.1| ribosome-binding factor A [Rhodospirillum rubrum ATCC 11170]
          Length = 164

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 5/121 (4%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
           +K P  ++R LRVGEE+R AL  V      +D  ++   ++++EV +S DLR ATV++ +
Sbjct: 6   DKAP--TQRQLRVGEEIRHALAEVFERGTVRDPAVAGVALTVTEVRISPDLRNATVFL-V 62

Query: 63  PLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
            L   P D V++ L     F+R  +   + + ++VP+LRF  D S      +N L+  P+
Sbjct: 63  RLGGGPLDEVLTGLRKARAFLRREVAIRI-HTKFVPDLRFESDPSFDYAEYINGLLHRPE 121

Query: 122 I 122
           +
Sbjct: 122 V 122


>gi|329847332|ref|ZP_08262360.1| ribosome-binding factor A [Asticcacaulis biprosthecum C19]
 gi|328842395|gb|EGF91964.1| ribosome-binding factor A [Asticcacaulis biprosthecum C19]
          Length = 118

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 8/105 (7%)

Query: 24  MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL------DVSPDRVISALNC 77
           M ++   E  D  +    ++I+EV MS DLR ATV++  PL      +V    ++ ALN 
Sbjct: 1   MEILREEEIHDDALHDVSVTITEVRMSPDLRHATVFVE-PLGAGINSNVQVGAIVEALNK 59

Query: 78  NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           + K++RG +GR + ++++ P LRF +D S     +++AL   P I
Sbjct: 60  HSKYMRGVLGRMI-DMKFTPALRFLHDESFNEAARIDALFMRPDI 103


>gi|167644011|ref|YP_001681674.1| ribosome-binding factor A [Caulobacter sp. K31]
 gi|189039531|sp|B0T172|RBFA_CAUSK RecName: Full=Ribosome-binding factor A
 gi|167346441|gb|ABZ69176.1| ribosome-binding factor A [Caulobacter sp. K31]
          Length = 164

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 23/135 (17%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-- 66
           S+R LR GE +R AL+ ++   +  D  ++   ++ISEV MS DL+ A  ++  PL    
Sbjct: 16  SQRQLRAGELIRHALVDILREEDLVDPALAGISVTISEVRMSADLKHAICFVE-PLGASI 74

Query: 67  -------------------SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
                              SP  V++ L    KF+RG++ +++ ++++ PEL+F +D + 
Sbjct: 75  APQVEREPSSPSRTVVVPGSPAEVVAGLTRLTKFLRGKLAKTI-DMKFTPELKFLHDETF 133

Query: 108 QSYWKLNALMCLPKI 122
            S   ++ L   P++
Sbjct: 134 NSATYMDRLFEDPRV 148


>gi|149185841|ref|ZP_01864156.1| ribosome-binding factor A [Erythrobacter sp. SD-21]
 gi|148830402|gb|EDL48838.1| ribosome-binding factor A [Erythrobacter sp. SD-21]
          Length = 133

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R L+VGE VR  L  ++   E  D ++    I+++EV M+ DLR A  Y+   L    
Sbjct: 13  SVRVLKVGERVRHILSELLARGEAHDDVLRAHNIAVTEVRMTPDLRNAKAYVKPLLGKDE 72

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             V+ AL  N  F +  + + L  L++ P+L F+ D S     ++  L+  P++
Sbjct: 73  AEVLKALRTNTAFFQKEVAQRL-GLKFAPKLSFKPDESFDEAGRIERLLDDPRV 125


>gi|224476398|ref|YP_002634004.1| ribosome-binding factor A [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254789763|sp|B9DPD6|RBFA_STACT RecName: Full=Ribosome-binding factor A
 gi|222421005|emb|CAL27819.1| putative ribosome-binding factor A [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 115

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  LM +I NN+ +D  I    I+I++V ++ DL +A VY++ L  +   D
Sbjct: 5   RAERVGEQMKKELMDII-NNKVKDPRIG--FITITDVQVTNDLSLAKVYLTVLGNEKEVD 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               AL     FI+  +G  +R LR VPEL+F YD S++   K+  ++
Sbjct: 62  DTFKALEKAKGFIKSELGSRMR-LRIVPELQFEYDHSIEYGNKIEKMI 108


>gi|227486450|ref|ZP_03916766.1| ribosome-binding factor A [Anaerococcus lactolyticus ATCC 51172]
 gi|227235631|gb|EEI85646.1| ribosome-binding factor A [Anaerococcus lactolyticus ATCC 51172]
          Length = 127

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 66/112 (58%), Gaps = 2/112 (1%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
           N +R  R+  EV+  +  +I+++    RL +  ++S+++V ++ DL  A +YIS+  D  
Sbjct: 2   NKKRTARISSEVKREISKIIMDDLNDPRLSAEAMVSVTDVEVTNDLSYADIYISVLGDNK 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + D V+ ALN    +I+  IG  +R LR +PE RF++D S++    ++ L+ 
Sbjct: 62  TKDGVMEALNQAKGYIKILIGERMR-LRSMPEFRFKFDNSIEHGAYMDKLIA 112


>gi|220927911|ref|YP_002504820.1| ribosome-binding factor A [Clostridium cellulolyticum H10]
 gi|219998239|gb|ACL74840.1| ribosome-binding factor A [Clostridium cellulolyticum H10]
          Length = 117

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R +R+ EEV+  +  +I N+    RL S  ++SI    ++ DLR A VY+S    D    
Sbjct: 4   RIVRISEEVKKEISNIIQNDIKDPRLPS--MVSIVSCSVTKDLRYAKVYVSVFGNDEQKK 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             ISAL     FIR  +G  ++ LRY PE+ F  DTS++  + +N L+
Sbjct: 62  NAISALKSAAGFIRRELGHRVQ-LRYTPEIHFELDTSIEHGFHINKLL 108


>gi|84515137|ref|ZP_01002500.1| ribosome-binding factor A [Loktanella vestfoldensis SKA53]
 gi|84511296|gb|EAQ07750.1| ribosome-binding factor A [Loktanella vestfoldensis SKA53]
          Length = 134

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
           ++R LRVGE +R  L  ++   E  D  ++R  I++ EV MS DLR+AT +I LPL  + 
Sbjct: 16  TQRMLRVGEMIRRTLSEILQRGEVHDPDLARMSITVGEVRMSPDLRIATAFI-LPLGGIG 74

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +  + AL  N   +R  + +   ++++ PELRF+ D +        AL+ 
Sbjct: 75  KEEALDALRRNRHEVRHLVVKG-GSMKFAPELRFQLDGTFDQMDATRALLA 124


>gi|254463718|ref|ZP_05077129.1| ribosome-binding factor A [Rhodobacterales bacterium Y4I]
 gi|206684626|gb|EDZ45108.1| ribosome-binding factor A [Rhodobacterales bacterium Y4I]
          Length = 131

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 6/110 (5%)

Query: 2   KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK    P  S+R LRVGE +R  L  V+   +  D  ++R  I++ EV  S DL++AT 
Sbjct: 3   KNKFHDGPGPSQRQLRVGELIRRTLSEVLARGDVHDPDLNRMSITVGEVRTSPDLKIATA 62

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           Y+ LPL     + V+  L  N   +R  +G+ L  L++ P+LRFR D + 
Sbjct: 63  YV-LPLGGKGQEDVLKLLARNKSELRRMVGKKL-GLKFTPDLRFRLDETF 110


>gi|329113265|ref|ZP_08242048.1| Ribosome-binding factor A [Acetobacter pomorum DM001]
 gi|326697406|gb|EGE49064.1| Ribosome-binding factor A [Acetobacter pomorum DM001]
          Length = 154

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGEEVR  L  V     F+D  +    ++++EV +S D R ATV+I+       
Sbjct: 27  SQRQLRVGEEVRRVLAEVFARTTFRDPDLVDVALTVTEVRLSPDFRHATVFITRLGRSDV 86

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             ++ AL     ++R ++   +R  R VPEL F+ DT+L +   ++ L+  P++
Sbjct: 87  AELLPALKRVAPWLRTQLAHKIRA-RTVPELHFQPDTALDTAMHMDTLLRSPEV 139


>gi|163745464|ref|ZP_02152824.1| ribosome-binding factor A [Oceanibulbus indolifex HEL-45]
 gi|161382282|gb|EDQ06691.1| ribosome-binding factor A [Oceanibulbus indolifex HEL-45]
          Length = 146

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 3/100 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
           ++R LRVGE VR AL  V+   +  D  ++R  I++ EV MS DL++AT Y+ LPL    
Sbjct: 16  TQRQLRVGETVRRALSDVLARGDVHDTDLNRLSITVGEVRMSPDLKIATAYV-LPLGGEG 74

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            D V+  L  N   +R ++ + L  L++ P+LRF+ D + 
Sbjct: 75  QDEVLKLLARNKNELRRQVAKKL-TLKFSPDLRFQLDRTF 113


>gi|168333343|ref|ZP_02691627.1| ribosome-binding factor A [Epulopiscium sp. 'N.t. morphotype B']
          Length = 116

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 60/105 (57%), Gaps = 1/105 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           +++ +RV EE++  +  +I  +  +D  +   ++S++ V  + DL+ A ++IS+  D   
Sbjct: 3   NQKIIRVNEEIQKEVAEIIRGDSIKDARMKDIMVSVTAVDTTTDLKNAKIFISVLQDNKK 62

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
           D V+  LN + KFIR  + R + NLR  PE+ F+ D S+    K+
Sbjct: 63  DDVLDVLNGSSKFIRKELARRI-NLRNTPEISFKLDNSIAYGIKM 106


>gi|260432190|ref|ZP_05786161.1| ribosome-binding factor A [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416018|gb|EEX09277.1| ribosome-binding factor A [Silicibacter lacuscaerulensis ITI-1157]
          Length = 131

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 6/110 (5%)

Query: 2   KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK    P  S+R LRVGE +R  L  V+   +  D  ++R  I++ EV  S DL++AT 
Sbjct: 3   KNKFHDGPGPSQRQLRVGELIRRTLSEVLARGDVHDPDLNRLSITVGEVRTSPDLKIATA 62

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           Y+ LPL     + VI  L  N   +R  +G+ +  L++ P+LRFR D + 
Sbjct: 63  YV-LPLGGKGQETVIELLARNKGELRRMVGKKV-GLKFAPDLRFRLDETF 110


>gi|242242553|ref|ZP_04796998.1| ribosome-binding factor A [Staphylococcus epidermidis W23144]
 gi|242233980|gb|EES36292.1| ribosome-binding factor A [Staphylococcus epidermidis W23144]
          Length = 127

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 5/109 (4%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     N+ RA RVGE+++  +M ++ NN+ +D  +    ++I++V ++ DL  A VY+
Sbjct: 6   MKRGEMMNNIRAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSQAKVYL 62

Query: 61  S-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
           + L  D   D    AL+    FI+  +G  +R LR +PEL F YD S++
Sbjct: 63  TVLGNDKEVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIE 110


>gi|254462052|ref|ZP_05075468.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2083]
 gi|206678641|gb|EDZ43128.1| ribosome-binding factor A [Rhodobacteraceae bacterium HTCC2083]
          Length = 142

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
           S+R LRVGE +R  L  ++   +  D  ++R  ++I EV +S DLRVATVY +LPL    
Sbjct: 15  SQRQLRVGELIRRGLSEILQRGDVHDADLNRLSVTIGEVRVSPDLRVATVY-ALPLGGEG 73

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
            D VI  L  N   +R  I + L  L++ P++RFR D +     +   L     +   +E
Sbjct: 74  KDDVIGLLAKNKGELRQLINKKL-ALKHSPDMRFRLDETFDKMDETRRLFEQEHVRADIE 132

Query: 128 K 128
           +
Sbjct: 133 R 133


>gi|119385523|ref|YP_916579.1| ribosome-binding factor A [Paracoccus denitrificans PD1222]
 gi|166219383|sp|A1B5T9|RBFA_PARDP RecName: Full=Ribosome-binding factor A
 gi|119375290|gb|ABL70883.1| ribosome-binding factor A [Paracoccus denitrificans PD1222]
          Length = 138

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
           S+R LRVGE +R  L  V+L  +  D  ++R  I++ EV  S DL+VAT Y+ LPL    
Sbjct: 13  SQRQLRVGELIRRTLSDVLLRGDVHDPELNRHSITVGEVRTSPDLKVATAYV-LPLGGHD 71

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            +  ++AL  N   +R  + +++  L+Y P+LRF  D + 
Sbjct: 72  AEEALAALRRNAGELRHLVAKAM-TLKYAPQLRFVLDETF 110


>gi|85373520|ref|YP_457582.1| ribosome-binding factor A [Erythrobacter litoralis HTCC2594]
 gi|84786603|gb|ABC62785.1| ribosome-binding factor A [Erythrobacter litoralis HTCC2594]
          Length = 112

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 19  VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCN 78
           +R  L  ++   E  D  +S   I+++EV M+ DLR AT Y+   L    D ++SAL  N
Sbjct: 1   MRHILSELLARQEVHDETVSAANIAVTEVRMTPDLRNATAYVKPLLGKEEDEIVSALRQN 60

Query: 79  IKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             +++  + + L  L++ P+L FR D S     ++  L+  PK+
Sbjct: 61  TAYLQKEVAKRL-GLKFAPKLMFRPDESFDEADRIEKLLRDPKV 103


>gi|251810701|ref|ZP_04825174.1| ribosome-binding factor A [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366766|ref|ZP_06613442.1| ribosome-binding factor A [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805861|gb|EES58518.1| ribosome-binding factor A [Staphylococcus epidermidis BCM-HMP0060]
 gi|291319067|gb|EFE59437.1| ribosome-binding factor A [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 127

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           N+ RA RVGE+++  +M ++ NN+ +D  +    ++I++V ++ DL  A VY++ L  D 
Sbjct: 13  NNIRAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNDK 69

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             D    AL+    FI+  +G  +R LR +PEL F YD S++
Sbjct: 70  EVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIE 110


>gi|258543553|ref|YP_003188986.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-01]
 gi|256634631|dbj|BAI00607.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-01]
 gi|256637687|dbj|BAI03656.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-03]
 gi|256640741|dbj|BAI06703.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-07]
 gi|256643796|dbj|BAI09751.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-22]
 gi|256646851|dbj|BAI12799.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-26]
 gi|256649904|dbj|BAI15845.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-32]
 gi|256652894|dbj|BAI18828.1| ribosome-binding factor A [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655948|dbj|BAI21875.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-12]
          Length = 154

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 1/114 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGEEVR  L  V     F+D  +    ++++EV +S D R ATV+I+       
Sbjct: 27  SQRQLRVGEEVRRVLAEVFARTTFRDPDLVDVDLTVTEVRLSPDFRHATVFITRLGRSDV 86

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             ++ AL     ++R ++   +R  R VPEL F+ DT+L +   ++ L+  P++
Sbjct: 87  AELLPALKRVAPWLRTQLAHKIR-ARTVPELHFQPDTALDTAMHMDTLLRSPEV 139


>gi|319401440|gb|EFV89650.1| ribosome-binding factor A [Staphylococcus epidermidis FRI909]
 gi|329724355|gb|EGG60867.1| ribosome-binding factor A [Staphylococcus epidermidis VCU144]
          Length = 116

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           N+ RA RVGE+++  +M ++ NN+ +D  +    ++I++V ++ DL  A VY++ L  D 
Sbjct: 2   NNIRAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNDK 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             D    AL+    FI+  +G  +R LR +PEL F YD S++
Sbjct: 59  EVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIE 99


>gi|254510483|ref|ZP_05122550.1| ribosome-binding factor A [Rhodobacteraceae bacterium KLH11]
 gi|221534194|gb|EEE37182.1| ribosome-binding factor A [Rhodobacteraceae bacterium KLH11]
          Length = 131

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 6/110 (5%)

Query: 2   KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK    P  S+R LRVGE +R  L  V+   +  D  ++R  I++ EV  S DL++AT 
Sbjct: 3   KNKFHDGPGPSQRQLRVGELIRRTLSEVLARGDVHDPDLNRMSITVGEVRTSPDLKIATA 62

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           Y+ LPL     + VI  L  N   +R  +G+ +  L++ P+LRFR D + 
Sbjct: 63  YV-LPLGGKGQEDVIELLARNKGELRRMVGKKV-GLKFSPDLRFRLDDTF 110


>gi|27467865|ref|NP_764502.1| ribosome-binding factor A [Staphylococcus epidermidis ATCC 12228]
 gi|57866760|ref|YP_188419.1| ribosome-binding factor A [Staphylococcus epidermidis RP62A]
 gi|282876298|ref|ZP_06285165.1| ribosome-binding factor A [Staphylococcus epidermidis SK135]
 gi|29427695|sp|Q8CPG2|RBFA_STAES RecName: Full=Ribosome-binding factor A
 gi|61214666|sp|Q5HPS1|RBFA_STAEQ RecName: Full=Ribosome-binding factor A
 gi|27315410|gb|AAO04544.1|AE016747_41 ribosome-binding factor A [Staphylococcus epidermidis ATCC 12228]
 gi|57637418|gb|AAW54206.1| ribosome-binding factor A [Staphylococcus epidermidis RP62A]
 gi|281295323|gb|EFA87850.1| ribosome-binding factor A [Staphylococcus epidermidis SK135]
 gi|329736627|gb|EGG72893.1| ribosome-binding factor A [Staphylococcus epidermidis VCU045]
          Length = 116

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           N+ RA RVGE+++  +M ++ NN+ +D  +    ++I++V ++ DL  A VY++ L  D 
Sbjct: 2   NNIRAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNDK 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             D    AL+    FI+  +G  +R LR +PEL F YD S++
Sbjct: 59  EVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIE 99


>gi|291166368|gb|EFE28414.1| ribosome-binding factor A [Filifactor alocis ATCC 35896]
          Length = 121

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 66/110 (60%), Gaps = 4/110 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLI--SRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           R  R+ EE+R  +  ++L  E +D  I  S+ +IS++ V +  DL+ A +YIS+  D +P
Sbjct: 5   RTRRISEEIRKVVGNMLLEGEIKDTKIRNSKGLISVTSVEVVRDLKYAYIYISVLGD-NP 63

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + ++  L     ++R  +GR + +LRY PE+ FR D S+++  +++ ++ 
Sbjct: 64  ETILDGLKRASGYVRKEVGRQV-DLRYTPEIIFRLDHSIENGVEMSKMIS 112


>gi|294675833|ref|YP_003576448.1| ribosome-binding factor A [Rhodobacter capsulatus SB 1003]
 gi|294474653|gb|ADE84041.1| ribosome-binding factor A [Rhodobacter capsulatus SB 1003]
          Length = 144

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 7/105 (6%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-- 66
           S+R LRVGE +R  L  V+L  +  D  +++  I++ EV  S DL+VATVY++ PL    
Sbjct: 13  SQRQLRVGELIRRTLSDVLLRGDVHDPDLNKISITVGEVRTSPDLKVATVYVA-PLGGTL 71

Query: 67  ---SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              S + +++AL  +   +R  + +++  L+Y P+LRFR D +  
Sbjct: 72  GGESAEAMLAALRRHSGELRHHVAKAM-TLKYAPDLRFRMDETFD 115


>gi|310658993|ref|YP_003936714.1| 30S ribosome binding factor [Clostridium sticklandii DSM 519]
 gi|308825771|emb|CBH21809.1| 30s ribosome binding factor [Clostridium sticklandii]
          Length = 120

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 4/109 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQD-RLI-SRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           R  R+GEE++  +  ++ +   +D R+I SR +ISI+ V +  DL+ A +YIS+ L    
Sbjct: 5   RTRRIGEEIKKTITELLRDQRIKDIRIIDSRSLISITTVDVVRDLKYAYIYISV-LGNDS 63

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D+V+        FIR  +G+ ++ LRY PEL F+ D S++    ++ L+
Sbjct: 64  DKVLEGFKSASGFIRKELGKDIK-LRYTPELVFKIDDSIERGVNMSKLI 111


>gi|332704830|ref|ZP_08424918.1| Ribosome-binding factor A [Desulfovibrio africanus str. Walvis Bay]
 gi|332554979|gb|EGJ52023.1| Ribosome-binding factor A [Desulfovibrio africanus str. Walvis Bay]
          Length = 110

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 65/104 (62%), Gaps = 7/104 (6%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDV 66
            SRR++R+ EE+   L   +L  E QD RL   +++++S V ++ D+ VA V+++   ++
Sbjct: 5   TSRRSVRLSEEIMREL-GNLLAEEVQDPRL---ELVTVSGVRLNADISVAEVFVTYSAEL 60

Query: 67  SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
            P + V  AL     F+R R+G+ L+ LR VPELRFR+D  L++
Sbjct: 61  HPREDVDKALEKAKGFLRTRLGKRLK-LRKVPELRFRFDEFLET 103


>gi|322418691|ref|YP_004197914.1| ribosome-binding factor A [Geobacter sp. M18]
 gi|320125078|gb|ADW12638.1| ribosome-binding factor A [Geobacter sp. M18]
          Length = 119

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 5/109 (4%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
           +R+ +VGEE+   +  +++    +D  I    ++I+ V M+ DLR ATVY ++   D   
Sbjct: 3   KRSDKVGEEIHKIISELLIKG-LKDPRIG--FLTITGVKMTPDLRQATVYFTVHGSDEDK 59

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               + LN    FIR  IG++L+ +R+VPE+ F+YDTSL     + +++
Sbjct: 60  KASEAGLNSAKGFIRKEIGQALK-MRFVPEVLFKYDTSLDYGQHIESIL 107


>gi|260574496|ref|ZP_05842500.1| ribosome-binding factor A [Rhodobacter sp. SW2]
 gi|259023392|gb|EEW26684.1| ribosome-binding factor A [Rhodobacter sp. SW2]
          Length = 138

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 7/102 (6%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGE +R  L  ++   E  D  ++R  I++ EV +S DL++AT Y+ +PL   D
Sbjct: 11  SQRQLRVGELIRRTLSDLLNRGEIHDPELNRMSITVGEVRLSNDLKIATAYV-MPLGGGD 69

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           V+    I+AL  N   +R RIG+ +  L++ P+LRF  D + 
Sbjct: 70  VAA--AIAALKRNKYDLRHRIGQQM-TLKHTPDLRFLPDETF 108


>gi|163796761|ref|ZP_02190719.1| ribosome-binding factor A [alpha proteobacterium BAL199]
 gi|159178015|gb|EDP62562.1| ribosome-binding factor A [alpha proteobacterium BAL199]
          Length = 130

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 13  LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
           +RVGEE+R  L  ++      D  +    ++ISEV +S DLR ATV+I+         ++
Sbjct: 1   MRVGEEIRRTLARILERGTLHDPALYHAPVTISEVTVSPDLRNATVWITRLGGGDATDLL 60

Query: 73  SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
           +AL  N   + G + R ++ L+Y P L+F  D++  +  +++AL+  P
Sbjct: 61  AALKRNAGRLGGLLARDIK-LKYAPRLQFARDSAFDTSSRIDALLRNP 107


>gi|329736237|gb|EGG72509.1| ribosome-binding factor A [Staphylococcus epidermidis VCU028]
          Length = 116

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           N+ RA RVGE+++  +M ++ NN+ +D  +    ++I++V ++ DL  A VY++ L  D 
Sbjct: 2   NNIRAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNDK 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             D    AL+    FI+  +G  +R LR +PEL F YD S++
Sbjct: 59  EVDNTFKALHKATGFIKSGLGSRMR-LRIIPELTFEYDESIE 99


>gi|296114404|ref|ZP_06833058.1| ribosome-binding factor A [Gluconacetobacter hansenii ATCC 23769]
 gi|295979165|gb|EFG85889.1| ribosome-binding factor A [Gluconacetobacter hansenii ATCC 23769]
          Length = 146

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRV EE+R  L  +    EF+D  +    I+++EV +S DL+ ATV+++       
Sbjct: 28  SQRQLRVAEEIRRVLADIFARVEFRDPELVDARITVTEVRISPDLKHATVFVARLGRSDI 87

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
           + ++ AL     F+R R+   +R LR VP+L F+ DT+L     ++ L+  P +   LE
Sbjct: 88  EALLPALKRVSSFLRSRLSHMVR-LRGVPDLHFQPDTALDYAMHVDDLLRDPAVARDLE 145


>gi|99079927|ref|YP_612081.1| ribosome-binding factor A [Ruegeria sp. TM1040]
 gi|259417241|ref|ZP_05741160.1| ribosome-binding factor A [Silicibacter sp. TrichCH4B]
 gi|122398485|sp|Q1GKJ7|RBFA_SILST RecName: Full=Ribosome-binding factor A
 gi|99036207|gb|ABF62819.1| ribosome-binding factor A [Ruegeria sp. TM1040]
 gi|259346147|gb|EEW57961.1| ribosome-binding factor A [Silicibacter sp. TrichCH4B]
          Length = 131

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 6/110 (5%)

Query: 2   KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KNK    P  S+R LRVGE +R  L  V+   +  D  ++R  I++ EV  S DL++AT 
Sbjct: 3   KNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDIHDPELNRLSITVGEVRTSPDLKIATA 62

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           Y+ LPL     + V+  L  N   +R  IG+    L++ P+LRF+ D + 
Sbjct: 63  YV-LPLGGKGQEDVLQLLARNKSELRRAIGKKT-GLKFTPDLRFQIDETF 110


>gi|126740777|ref|ZP_01756462.1| ribosome-binding factor A [Roseobacter sp. SK209-2-6]
 gi|126718073|gb|EBA14790.1| ribosome-binding factor A [Roseobacter sp. SK209-2-6]
          Length = 131

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 9/122 (7%)

Query: 2   KNKNPKN---SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KN +P+    S+R LRVGE +R  L  V++  +  D  ++R  I++ EV ++ DLR+AT 
Sbjct: 3   KNSSPEGRGPSQRQLRVGELIRRTLSEVLMRGDLHDPELNRMSITVGEVRVTPDLRIATA 62

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           Y+ LPL     + ++  L  N   +R   G+ L  +++ P+LRF+ D    +Y +++A  
Sbjct: 63  YV-LPLGGKGQEDLLKLLARNKGELRRIAGKKL-GMKFAPDLRFQLDL---TYDQMDATR 117

Query: 118 CL 119
            +
Sbjct: 118 AM 119


>gi|77464688|ref|YP_354192.1| ribosome-binding factor A [Rhodobacter sphaeroides 2.4.1]
 gi|123590863|sp|Q3IYU3|RBFA_RHOS4 RecName: Full=Ribosome-binding factor A
 gi|77389106|gb|ABA80291.1| ribosome-binding factor A [Rhodobacter sphaeroides 2.4.1]
          Length = 140

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 7/102 (6%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGE +R  L  V+   E  D  ++R  I++ EV  S DL+VATV++ +PL   D
Sbjct: 15  SQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHV-MPLGGKD 73

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           V  +  IS L+ +   +R  I R +  L+Y P+LRFR D + 
Sbjct: 74  V--EEAISLLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 112


>gi|149925036|ref|ZP_01913354.1| ribosome-binding factor A [Plesiocystis pacifica SIR-1]
 gi|149814100|gb|EDM73726.1| ribosome-binding factor A [Plesiocystis pacifica SIR-1]
          Length = 153

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 3/112 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           SRR  RV E +R  +  ++L  E +D RL     +S++ V +S DL VAT+Y+  L   +
Sbjct: 2   SRRRQRVEELLRREMAQMLLRGELRDPRLQPASAVSVTGVSVSPDLSVATIYVDVLTEAL 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + V++AL      IR ++G  +  LR  PELRF +D S++   ++ A++ 
Sbjct: 62  RLESVLAALRAGGGAIRRKLGERV-QLRRTPELRFHHDDSIERGNRVEAILT 112


>gi|167464644|ref|ZP_02329733.1| ribosome-binding factor A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 118

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RVGE+++  L  ++  +E +D  I    ++I+ V ++ DL +A VY+S L  D   +
Sbjct: 5   RVGRVGEQIKKELSQIV-QSELKDPRIG--FLTITGVDVTNDLSLAKVYLSVLGSDEEKE 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL     +IR  +G+ +R LR VPEL+F++DTS+    ++ +L+
Sbjct: 62  ATLKALGVASGYIRSELGKRIR-LRKVPELQFKFDTSIDYGSRIESLL 108


>gi|163739812|ref|ZP_02147219.1| ribosome-binding factor A [Phaeobacter gallaeciensis BS107]
 gi|163744093|ref|ZP_02151459.1| ribosome-binding factor A [Phaeobacter gallaeciensis 2.10]
 gi|161382640|gb|EDQ07043.1| ribosome-binding factor A [Phaeobacter gallaeciensis 2.10]
 gi|161386846|gb|EDQ11208.1| ribosome-binding factor A [Phaeobacter gallaeciensis BS107]
          Length = 131

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
           S+R LRVGE +R AL  +    +  D  ++R  I++ EV  S DLR+AT Y+ LPL    
Sbjct: 13  SQRQLRVGELIRRALSEIFARGDLHDPDLNRLSITVGEVRTSPDLRIATAYV-LPLGGKG 71

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            +  +  +  N   +R  IG+ L  L++ PELRF+ D + 
Sbjct: 72  QEDTLKLMARNKGELRRMIGKKL-ALKFTPELRFQLDDTF 110


>gi|253701578|ref|YP_003022767.1| ribosome-binding factor A [Geobacter sp. M21]
 gi|259552004|sp|C6E2P9|RBFA_GEOSM RecName: Full=Ribosome-binding factor A
 gi|251776428|gb|ACT19009.1| ribosome-binding factor A [Geobacter sp. M21]
          Length = 119

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 5/109 (4%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
           +R+ +VGEE+   +  +++    +D  I    ++I+ V M+ DLR ATVY ++   D   
Sbjct: 3   KRSDKVGEEIHKIISELLIKG-LKDPRIG--FLTITGVKMTPDLRQATVYFTVHGSDEDK 59

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               + LN    +IR  IG++L+ +R+VPE+ F+YDTSL     + +++
Sbjct: 60  KNSEAGLNSAKGYIRKEIGQALK-MRFVPEVLFKYDTSLDYGQHIESIL 107


>gi|154254060|ref|YP_001414884.1| ribosome-binding factor A [Parvibaculum lavamentivorans DS-1]
 gi|171769695|sp|A7HZ94|RBFA_PARL1 RecName: Full=Ribosome-binding factor A
 gi|154158010|gb|ABS65227.1| ribosome-binding factor A [Parvibaculum lavamentivorans DS-1]
          Length = 140

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 3/115 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LR GE +R AL  V+     QD  +     S++EV +S DLR AT +++ PL    
Sbjct: 17  SQRQLRAGELIRRALSDVVTRGTIQDPDLIERSFSVTEVRVSPDLRHATCFVA-PLGKGD 75

Query: 69  DRVISALNCNIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
              ++A    ++ ++RG++ + +   +Y+P+L F  DTS     +++ L+  PK+
Sbjct: 76  AAALAAALTRVRGYLRGQLSKEV-TFKYMPDLTFEPDTSFDKAEQIDRLLHSPKV 129


>gi|322382345|ref|ZP_08056252.1| ribosome-binding factor A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153698|gb|EFX46073.1| ribosome-binding factor A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 113

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 63/105 (60%), Gaps = 5/105 (4%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVI 72
           RVGE+++  L  ++  +E +D  I    ++I+ V ++ DL +A VY+S L  D   +  +
Sbjct: 3   RVGEQIKKELSQIV-QSELKDPRIG--FLTITGVDVTNDLSLAKVYLSVLGSDEEKEATL 59

Query: 73  SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            AL     +IR  +G+ +R LR VPEL+F++DTS+    ++ +L+
Sbjct: 60  KALGVASGYIRSELGKRIR-LRKVPELQFKFDTSIDYGSRIESLL 103


>gi|319892288|ref|YP_004149163.1| Ribosome-binding factor A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161984|gb|ADV05527.1| Ribosome-binding factor A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464615|gb|ADX76768.1| ribosome-binding factor A [Staphylococcus pseudintermedius ED99]
          Length = 114

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 5/99 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  LM +I NN+ +D  +    ++I++V  + DL +A VY++ L  D   +
Sbjct: 4   RAERVGEQMKKELMDII-NNKLKDPRVG--FLTITDVQPTNDLSLAKVYLTVLGSDKERE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
                L     FI+  IG+ +R LR VP+L+F YD S++
Sbjct: 61  NTFKGLEKAKGFIKSEIGQRMR-LRIVPDLQFEYDESIE 98


>gi|325290359|ref|YP_004266540.1| ribosome-binding factor A [Syntrophobotulus glycolicus DSM 8271]
 gi|324965760|gb|ADY56539.1| ribosome-binding factor A [Syntrophobotulus glycolicus DSM 8271]
          Length = 124

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 65/111 (58%), Gaps = 5/111 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
              R++R+ E ++  +  +IL  E +D  I    I++++V ++ DLR A +Y+S +  + 
Sbjct: 2   GKHRSVRLAETIKEEVARIILE-EIKDPRIG--FITLTDVEVAEDLRYAKLYVSIMGSEE 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                + ALN    F+R  +G+++R LRYVPE+ F+YD S++    ++ L+
Sbjct: 59  EVKNSLEALNRASGFVRSELGKTVR-LRYVPEISFKYDQSIEQGAHISKLL 108


>gi|296132889|ref|YP_003640136.1| ribosome-binding factor A [Thermincola sp. JR]
 gi|296031467|gb|ADG82235.1| ribosome-binding factor A [Thermincola potens JR]
          Length = 120

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
           +  RA RV E ++  +   +L  E +D  I    ++  EVC   DLR A +YIS+   D 
Sbjct: 2   SGHRASRVAEAIKKEVTQ-MLGGEIKDPRIGFVTVTGVEVC--PDLRHARIYISVYGSDE 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              + + ALN    F+R  +G+ +R LRY PE+ FR+D S++   ++  L+
Sbjct: 59  EKAQTLQALNKAKGFVRSELGKRIR-LRYTPEVEFRFDESIERGARIMELL 108


>gi|255524227|ref|ZP_05391186.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
 gi|296185348|ref|ZP_06853758.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
 gi|255512052|gb|EET88333.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
 gi|296050182|gb|EFG89606.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
          Length = 121

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
           R+ R+ EE++  +  +I N+    RL +  +IS+++V ++ DLR A VY+S+  D  S +
Sbjct: 5   RSGRINEEMKREISTIIQNDIKDPRLSA--MISVTKVDVTKDLRYAKVYVSIFGDEESKN 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               AL  +  FIR  IG  + NLRY PE+    D +++    ++AL+
Sbjct: 63  STFEALKGSAGFIRREIGHKI-NLRYTPEILIELDNTIEQGMHIDALL 109


>gi|206978440|ref|ZP_03239307.1| ribosome-binding factor A [Bacillus cereus H3081.97]
 gi|217961231|ref|YP_002339799.1| ribosome-binding factor A [Bacillus cereus AH187]
 gi|229140452|ref|ZP_04269007.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST26]
 gi|226736638|sp|B7HLE4|RBFA_BACC7 RecName: Full=Ribosome-binding factor A
 gi|206743355|gb|EDZ54795.1| ribosome-binding factor A [Bacillus cereus H3081.97]
 gi|217067043|gb|ACJ81293.1| ribosome-binding factor A [Bacillus cereus AH187]
 gi|228643013|gb|EEK99289.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST26]
          Length = 118

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  +    +++++V +S DL++ATVYIS L  +   D
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKD 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107


>gi|294500895|ref|YP_003564595.1| ribosome-binding factor A [Bacillus megaterium QM B1551]
 gi|295706241|ref|YP_003599316.1| ribosome-binding factor A [Bacillus megaterium DSM 319]
 gi|294350832|gb|ADE71161.1| ribosome-binding factor A [Bacillus megaterium QM B1551]
 gi|294803900|gb|ADF40966.1| ribosome-binding factor A [Bacillus megaterium DSM 319]
          Length = 121

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           RA RVGE+++   M  ILN + +D  I    +++++V +S DL+ A VYIS+  D    +
Sbjct: 4   RATRVGEQMKKE-MGEILNRKIKDPRIG--FVTVTDVQVSGDLQQAKVYISVLGDAEQRE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    ++ +L+
Sbjct: 61  NTLKGLAKAKGFIRSEIGQRIR-LRKTPEITFEFDESIDYGNRIESLL 107


>gi|289423163|ref|ZP_06424978.1| ribosome-binding factor A [Peptostreptococcus anaerobius 653-L]
 gi|289156494|gb|EFD05144.1| ribosome-binding factor A [Peptostreptococcus anaerobius 653-L]
          Length = 115

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 4/109 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R  R+ EEV+ A+  +++N     R+ S  +IS+++V ++ DLR A VYIS+ L    
Sbjct: 3   SNRIRRISEEVKKAISVMLINGIKDPRITS--MISVTDVEVTNDLRYAFVYISI-LGGDK 59

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  +  LN    +IR  +GR ++ LRY PE+ F+ D S++    ++ L+
Sbjct: 60  EESLEGLNSARGYIRREVGRQVK-LRYAPEIIFKIDDSIERGMYMDELI 107


>gi|298528718|ref|ZP_07016122.1| ribosome-binding factor A [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512370|gb|EFI36272.1| ribosome-binding factor A [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 109

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 5/104 (4%)

Query: 5   NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
            P  SRRA R+ + +   L  +I+      RL   ++++I+ V M+ DL +A V  +   
Sbjct: 2   QPATSRRATRMADSIMRELGRIIVEEARDPRL---NLVTITGVLMNKDLSIARVMYTHIQ 58

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             SP+ +  AL     F+R  +G++L+ +RYVPELRF +DT LQ
Sbjct: 59  GPSPE-LEKALGSARGFLRSSLGQNLK-MRYVPELRFEWDTYLQ 100


>gi|332559581|ref|ZP_08413903.1| ribosome-binding factor A [Rhodobacter sphaeroides WS8N]
 gi|332277293|gb|EGJ22608.1| ribosome-binding factor A [Rhodobacter sphaeroides WS8N]
          Length = 140

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 7/102 (6%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGE +R  L  V+   E  D  ++R  I++ EV  S DL+VATV++ +PL   D
Sbjct: 15  SQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHV-MPLGGKD 73

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           V  +  I+ L+ +   +R  I R +  L+Y P+LRFR D + 
Sbjct: 74  V--EEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 112


>gi|70726645|ref|YP_253559.1| ribosome-binding factor A [Staphylococcus haemolyticus JCSC1435]
 gi|123660054|sp|Q4L5X2|RBFA_STAHJ RecName: Full=Ribosome-binding factor A
 gi|68447369|dbj|BAE04953.1| ribosome-binding factor A [Staphylococcus haemolyticus JCSC1435]
          Length = 116

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 65/111 (58%), Gaps = 5/111 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           N+ RA RVGE+++  +M ++ NN+ +D  +    I+I++V ++ DL  A VY++ L  + 
Sbjct: 2   NNMRAERVGEQMKKEIMDIV-NNKVKDPRVG--FITITDVDLTNDLSQAKVYLTVLGSEK 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +    AL+    FI+  +G  +R LR VPEL F YD S++   K+  ++
Sbjct: 59  EVNDTFKALDKAKGFIKSELGSRMR-LRIVPELFFEYDESIEYGNKIEKMI 108


>gi|51892661|ref|YP_075352.1| ribosome-binding factor A [Symbiobacterium thermophilum IAM 14863]
 gi|61214894|sp|Q67P85|RBFA_SYMTH RecName: Full=Ribosome-binding factor A
 gi|51856350|dbj|BAD40508.1| ribosome-binding factor A [Symbiobacterium thermophilum IAM 14863]
          Length = 125

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 5/109 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA+RVGE++R  L   +L +E +D  I    +SI +V +S D+R A +Y+S L  D    
Sbjct: 6   RAIRVGEQMREELAQ-LLRDEVKDPRIG--FVSIVKVEVSRDIRHAKIYVSVLGNDQQKK 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             ++ L     F+R  + + L+ LRY+PEL F  D S++   ++  L+ 
Sbjct: 63  ETMAGLASATGFLRSELAKRLQ-LRYMPELHFALDESIEHGQRIAQLLV 110


>gi|260427176|ref|ZP_05781155.1| ribosome-binding factor A [Citreicella sp. SE45]
 gi|260421668|gb|EEX14919.1| ribosome-binding factor A [Citreicella sp. SE45]
          Length = 132

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
           S+R LRVGE +R  L  V+   +  D  ++R  I++ EV +S DL+VAT Y+ +PL   +
Sbjct: 13  SQRQLRVGELIRRTLSDVLTRGDIHDPELNRLSITVGEVVVSPDLKVATAYV-VPLGGGA 71

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
            D +   L  N   +R  + + L  L++ PELRF+ D +     +   L     +   LE
Sbjct: 72  SDEMFDLLKRNRSELRRAVSKGL-TLKFAPELRFKLDETFDRLDETRRLFAQDAVRRDLE 130

Query: 128 K 128
           +
Sbjct: 131 E 131


>gi|221640602|ref|YP_002526864.1| ribosome-binding factor A [Rhodobacter sphaeroides KD131]
 gi|254789761|sp|B9KP41|RBFA_RHOSK RecName: Full=Ribosome-binding factor A
 gi|221161383|gb|ACM02363.1| Ribosome-binding factor A [Rhodobacter sphaeroides KD131]
          Length = 137

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE +R  L  V+   E  D  ++R  I++ EV  S DL+VATV++ +PL    
Sbjct: 12  SQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHV-MPLGGKD 70

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            +  I+ L+ +   +R  I R +  L+Y P+LRFR D + 
Sbjct: 71  VEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 109


>gi|146278956|ref|YP_001169115.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17025]
 gi|145557197|gb|ABP71810.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17025]
          Length = 165

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 7/102 (6%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGE +R  L  V+   E  D  ++R  I++ EV  S DL+VATV++ +PL   D
Sbjct: 40  SQRQLRVGELIRRTLADVLNRGEIHDPDLNRMSITVGEVRCSPDLKVATVHV-MPLGGKD 98

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           V  +  I+ L+ +   +R  I R +  L+Y P+LRFR D + 
Sbjct: 99  V--EEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 137


>gi|326204067|ref|ZP_08193928.1| ribosome-binding factor A [Clostridium papyrosolvens DSM 2782]
 gi|325985834|gb|EGD46669.1| ribosome-binding factor A [Clostridium papyrosolvens DSM 2782]
          Length = 117

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R +R+ EEV+  +  +I N+    RL S  ++SI    ++ DLR A V++S L  +    
Sbjct: 4   RIIRISEEVKKEISNIIQNDIKDPRLPS--MVSIVSCNVTKDLRYAKVFVSVLGNEEQKK 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             ISAL     FIR  +G  ++ LRY PE+ F  DTS++    +N L+
Sbjct: 62  NAISALKSAAGFIRRELGHRVQ-LRYTPEIHFELDTSIEHGIHINKLL 108


>gi|323697465|ref|ZP_08109377.1| ribosome-binding factor A [Desulfovibrio sp. ND132]
 gi|323457397|gb|EGB13262.1| ribosome-binding factor A [Desulfovibrio desulfuricans ND132]
          Length = 113

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
            SRRA+R+G+++   +  +++      RL   +++++S V M+ +LR+A ++ ++  D  
Sbjct: 5   TSRRAVRMGDQIMREIGTLLVEEAADPRL---NLVTLSGVRMNSNLRIAEIFYTVSGDAE 61

Query: 68  PDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             R V   L     F+R R+GR L+ L+Y PELRF++D  L+
Sbjct: 62  HRREVQEGLEKATGFLRSRLGRILK-LQYTPELRFQFDEFLE 102


>gi|172046045|sp|A4WWP6|RBFA_RHOS5 RecName: Full=Ribosome-binding factor A
          Length = 140

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE +R  L  V+   E  D  ++R  I++ EV  S DL+VATV++ +PL    
Sbjct: 15  SQRQLRVGELIRRTLADVLNRGEIHDPDLNRMSITVGEVRCSPDLKVATVHV-MPLGGKD 73

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            +  I+ L+ +   +R  I R +  L+Y P+LRFR D + 
Sbjct: 74  VEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 112


>gi|126736599|ref|ZP_01752339.1| ribosome-binding factor A [Roseobacter sp. CCS2]
 gi|126713912|gb|EBA10783.1| ribosome-binding factor A [Roseobacter sp. CCS2]
          Length = 131

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 3   NKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           N++ K  ++R LRVGE +R  L  V+   +  D  ++R  I++ EV M+ DLR+AT ++ 
Sbjct: 6   NRDGKAPTQRMLRVGEVIRRTLSEVLQRGDVHDDELARMSITVGEVRMTSDLRIATAFV- 64

Query: 62  LPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           LPL        + AL  N   IR  + +    +++ PELRF  D +        AL+ 
Sbjct: 65  LPLGGHGKQEALEALRRNRHEIRHLVVKG-GTMKFAPELRFEIDGTFDQIDATRALLA 121


>gi|197117692|ref|YP_002138119.1| ribosome-binding factor A [Geobacter bemidjiensis Bem]
 gi|226723601|sp|B5EI59|RBFA_GEOBB RecName: Full=Ribosome-binding factor A
 gi|197087052|gb|ACH38323.1| ribosome-binding factor A [Geobacter bemidjiensis Bem]
          Length = 119

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 63/109 (57%), Gaps = 5/109 (4%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
           +R+ +VGE++   +  +++    +D  I    ++I+ V M+ DLR ATVY ++   D   
Sbjct: 3   KRSDKVGEQIHKIISELLIKG-LKDPRIG--FLTITGVKMTPDLRQATVYFTVHGSDEDK 59

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               + LN    +IR  IG++L+ +R+VPE+ F+YDTSL     + +++
Sbjct: 60  KNSEAGLNSAKGYIRKEIGQALK-MRFVPEVLFKYDTSLDYGQHIESIL 107


>gi|126463528|ref|YP_001044642.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17029]
 gi|171855226|sp|A3PNF4|RBFA_RHOS1 RecName: Full=Ribosome-binding factor A
 gi|126105192|gb|ABN77870.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17029]
          Length = 137

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE +R  L  V+   E  D  ++R  I++ EV  S DL+VATV++ +PL    
Sbjct: 12  SQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHV-MPLGGKN 70

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            +  I+ L+ +   +R  I R +  L+Y P+LRFR D + 
Sbjct: 71  VEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 109


>gi|159045581|ref|YP_001534375.1| ribosome-binding factor A [Dinoroseobacter shibae DFL 12]
 gi|189039539|sp|A8LL25|RBFA_DINSH RecName: Full=Ribosome-binding factor A
 gi|157913341|gb|ABV94774.1| ribosome-binding factor A [Dinoroseobacter shibae DFL 12]
          Length = 135

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
           S+R LRVGE +R  L  V+   +  D  ++R  I++ EV  S DL+VAT Y+ LPL    
Sbjct: 13  SQRQLRVGELIRRTLSSVLNQGDIHDPDLNRMSITVGEVRTSPDLKVATAYV-LPLGGHG 71

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
               + AL  N   +R  + + L  L++ PELRF+ D +     +   L+    +   L+
Sbjct: 72  AQDALDALRRNRHELRRAVSKEL-TLKFSPELRFQIDETFDRMDETRRLLSQDHVRQDLD 130

Query: 128 K 128
           K
Sbjct: 131 K 131


>gi|126698909|ref|YP_001087806.1| ribosome-binding factor A [Clostridium difficile 630]
 gi|255100330|ref|ZP_05329307.1| ribosome-binding factor A [Clostridium difficile QCD-63q42]
 gi|255306268|ref|ZP_05350440.1| ribosome-binding factor A [Clostridium difficile ATCC 43255]
 gi|123174598|sp|Q18BH6|RBFA_CLOD6 RecName: Full=Ribosome-binding factor A
 gi|115250346|emb|CAJ68168.1| Ribosome-binding factor A [Clostridium difficile]
          Length = 126

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 65/107 (60%), Gaps = 4/107 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  R+ EE+R  +  +++N     R+ S  ++S+++V ++ DLR A VY+S+ L    + 
Sbjct: 6   RTRRIAEEIRKVVSTMLINGVKDPRITS--MVSVTDVEVTNDLRYAYVYVSI-LGGDEES 62

Query: 71  VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            ++ L     +IR  +G++++ LRY+PE+ F+ D S++    +++L+
Sbjct: 63  TLTGLKSAGGYIRREVGKNIK-LRYIPEIVFKLDDSIEKGMYMDSLI 108


>gi|147677605|ref|YP_001211820.1| ribosome-binding factor A [Pelotomaculum thermopropionicum SI]
 gi|189039550|sp|A5D2S1|RBFA_PELTS RecName: Full=Ribosome-binding factor A
 gi|146273702|dbj|BAF59451.1| ribosome-binding factor A [Pelotomaculum thermopropionicum SI]
          Length = 119

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 9/112 (8%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R+ RV E ++  +   +L NE +D  I    ++I+ V +S DLR A +Y S+    SP
Sbjct: 2   SFRSERVAEAIKKEVSD-MLRNELKDPRIG--FVTITSVEVSKDLRYANIYASVF--GSP 56

Query: 69  D---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D     I AL     FIRG +G+ +R LRY PE+ F+ D S+    ++ ALM
Sbjct: 57  DDQKETIEALKKAQGFIRGELGKRIR-LRYTPEITFKLDQSIGRGSRVLALM 107


>gi|325276166|ref|ZP_08141971.1| ribosome-binding factor A [Pseudomonas sp. TJI-51]
 gi|324098703|gb|EGB96744.1| ribosome-binding factor A [Pseudomonas sp. TJI-51]
          Length = 132

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S DL  A V+I++  + 
Sbjct: 3   KEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGEE 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +PD V   + ALN    F+R  +GRS++ LR VP+L F +D S+     L+AL+
Sbjct: 60  TPDAVQQSLKALNSAASFLRLHLGRSMQ-LRSVPQLHFHFDESVSRGVHLSALI 112


>gi|148267760|ref|YP_001246703.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH9]
 gi|151221391|ref|YP_001332213.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|253731889|ref|ZP_04866054.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733492|ref|ZP_04867657.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257425324|ref|ZP_05601749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427985|ref|ZP_05604383.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430618|ref|ZP_05607000.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433378|ref|ZP_05609736.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436220|ref|ZP_05612267.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795674|ref|ZP_05644653.1| ribosome-binding factor A [Staphylococcus aureus A9781]
 gi|258416077|ref|ZP_05682345.1| ribosome-binding factor A [Staphylococcus aureus A9763]
 gi|258421660|ref|ZP_05684584.1| ribosome-binding factor A [Staphylococcus aureus A9719]
 gi|258423889|ref|ZP_05686774.1| ribosome-binding factor A [Staphylococcus aureus A9635]
 gi|258434816|ref|ZP_05688890.1| ribosome-binding factor A [Staphylococcus aureus A9299]
 gi|258444608|ref|ZP_05692937.1| ribosome-binding factor A [Staphylococcus aureus A8115]
 gi|258447559|ref|ZP_05695703.1| ribosome-binding factor A [Staphylococcus aureus A6300]
 gi|258449401|ref|ZP_05697504.1| ribosome-binding factor A [Staphylococcus aureus A6224]
 gi|258452569|ref|ZP_05700575.1| ribosome-binding factor A [Staphylococcus aureus A5948]
 gi|258454780|ref|ZP_05702744.1| ribosome-binding factor A [Staphylococcus aureus A5937]
 gi|282892758|ref|ZP_06300993.1| ribosome-binding factor A [Staphylococcus aureus A8117]
 gi|282903825|ref|ZP_06311713.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905588|ref|ZP_06313443.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908563|ref|ZP_06316393.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910842|ref|ZP_06318645.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914047|ref|ZP_06321834.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918969|ref|ZP_06326704.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           C427]
 gi|282920514|ref|ZP_06328235.1| ribosome-binding factor A [Staphylococcus aureus A9765]
 gi|282924092|ref|ZP_06331768.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           C101]
 gi|282927612|ref|ZP_06335228.1| ribosome-binding factor A [Staphylococcus aureus A10102]
 gi|283958013|ref|ZP_06375464.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501079|ref|ZP_06666930.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510041|ref|ZP_06668749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           M809]
 gi|297208084|ref|ZP_06924515.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297591285|ref|ZP_06949923.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MN8]
 gi|300912165|ref|ZP_07129608.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304381166|ref|ZP_07363819.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|147740829|gb|ABQ49127.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH9]
 gi|150374191|dbj|BAF67451.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|253724299|gb|EES93028.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728546|gb|EES97275.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271781|gb|EEV03919.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274826|gb|EEV06313.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278746|gb|EEV09365.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281471|gb|EEV11608.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284502|gb|EEV14622.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789646|gb|EEV27986.1| ribosome-binding factor A [Staphylococcus aureus A9781]
 gi|257839225|gb|EEV63701.1| ribosome-binding factor A [Staphylococcus aureus A9763]
 gi|257842346|gb|EEV66771.1| ribosome-binding factor A [Staphylococcus aureus A9719]
 gi|257845918|gb|EEV69947.1| ribosome-binding factor A [Staphylococcus aureus A9635]
 gi|257849177|gb|EEV73159.1| ribosome-binding factor A [Staphylococcus aureus A9299]
 gi|257850101|gb|EEV74054.1| ribosome-binding factor A [Staphylococcus aureus A8115]
 gi|257853750|gb|EEV76709.1| ribosome-binding factor A [Staphylococcus aureus A6300]
 gi|257857389|gb|EEV80287.1| ribosome-binding factor A [Staphylococcus aureus A6224]
 gi|257859787|gb|EEV82629.1| ribosome-binding factor A [Staphylococcus aureus A5948]
 gi|257863163|gb|EEV85927.1| ribosome-binding factor A [Staphylococcus aureus A5937]
 gi|269940761|emb|CBI49143.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282314064|gb|EFB44456.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316779|gb|EFB47153.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322115|gb|EFB52439.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325447|gb|EFB55756.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327625|gb|EFB57908.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330880|gb|EFB60394.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590615|gb|EFB95692.1| ribosome-binding factor A [Staphylococcus aureus A10102]
 gi|282594176|gb|EFB99163.1| ribosome-binding factor A [Staphylococcus aureus A9765]
 gi|282595443|gb|EFC00407.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764755|gb|EFC04880.1| ribosome-binding factor A [Staphylococcus aureus A8117]
 gi|283470485|emb|CAQ49696.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790162|gb|EFC28979.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|291096084|gb|EFE26345.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466985|gb|EFF09503.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           M809]
 gi|296887327|gb|EFH26229.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297576171|gb|EFH94887.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MN8]
 gi|300886411|gb|EFK81613.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751093|gb|ADL65270.1| ribosome-binding factor A (P15B PROTEIN) [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340149|gb|EFM06090.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438350|gb|ADQ77421.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|320140913|gb|EFW32760.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144371|gb|EFW36137.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323441050|gb|EGA98757.1| ribosome-binding factor A [Staphylococcus aureus O11]
 gi|323443919|gb|EGB01530.1| ribosome-binding factor A [Staphylococcus aureus O46]
 gi|329313940|gb|AEB88353.1| Ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727531|gb|EGG63987.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           21172]
 gi|329727805|gb|EGG64256.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           21189]
 gi|329733675|gb|EGG70003.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           21193]
          Length = 130

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           +S RA RVGE+++  LM +I NN+ +D  +    I+I++V ++ DL  A V+++ L  D 
Sbjct: 16  SSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQAKVFLTVLGNDK 72

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             +    AL+    FI+  +G  +R LR +PEL + YD S++
Sbjct: 73  EVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIE 113


>gi|15924260|ref|NP_371794.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926853|ref|NP_374386.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282882|ref|NP_645970.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MW2]
 gi|49483433|ref|YP_040657.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486109|ref|YP_043330.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651840|ref|YP_186146.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus COL]
 gi|82750871|ref|YP_416612.1| ribosome-binding factor A [Staphylococcus aureus RF122]
 gi|87161703|ref|YP_493860.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194980|ref|YP_499780.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150393819|ref|YP_001316494.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH1]
 gi|156979591|ref|YP_001441850.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509436|ref|YP_001575095.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142504|ref|ZP_03566997.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315626|ref|ZP_04838839.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006057|ref|ZP_05144658.2| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|262048160|ref|ZP_06021047.1| ribosome-binding factor A [Staphylococcus aureus D30]
 gi|262051332|ref|ZP_06023555.1| ribosome-binding factor A [Staphylococcus aureus 930918-3]
 gi|269202887|ref|YP_003282156.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|284024263|ref|ZP_06378661.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus 132]
 gi|294848266|ref|ZP_06789013.1| ribosome-binding factor A [Staphylococcus aureus A9754]
 gi|295406207|ref|ZP_06816014.1| ribosome-binding factor A [Staphylococcus aureus A8819]
 gi|295427757|ref|ZP_06820389.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296274828|ref|ZP_06857335.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MR1]
 gi|297244435|ref|ZP_06928318.1| ribosome-binding factor A [Staphylococcus aureus A8796]
 gi|54039026|sp|P65967|RBFA_STAAN RecName: Full=Ribosome-binding factor A
 gi|54039027|sp|P65968|RBFA_STAAW RecName: Full=Ribosome-binding factor A
 gi|54041787|sp|P65966|RBFA_STAAM RecName: Full=Ribosome-binding factor A
 gi|56749520|sp|Q6G9U3|RBFA_STAAS RecName: Full=Ribosome-binding factor A
 gi|56749567|sp|Q6GHG5|RBFA_STAAR RecName: Full=Ribosome-binding factor A
 gi|61214665|sp|Q5HGG1|RBFA_STAAC RecName: Full=Ribosome-binding factor A
 gi|122540682|sp|Q2G2Q4|RBFA_STAA8 RecName: Full=Ribosome-binding factor A
 gi|123486171|sp|Q2FHG8|RBFA_STAA3 RecName: Full=Ribosome-binding factor A
 gi|123549084|sp|Q2YXP6|RBFA_STAAB RecName: Full=Ribosome-binding factor A
 gi|166219410|sp|A7X1Q2|RBFA_STAA1 RecName: Full=Ribosome-binding factor A
 gi|172049025|sp|A6QGG9|RBFA_STAAE RecName: Full=Ribosome-binding factor A
 gi|182676603|sp|A5ISF4|RBFA_STAA9 RecName: Full=Ribosome-binding factor A
 gi|189039563|sp|A6U189|RBFA_STAA2 RecName: Full=Ribosome-binding factor A
 gi|189039564|sp|A8Z3V0|RBFA_STAAT RecName: Full=Ribosome-binding factor A
 gi|13701070|dbj|BAB42365.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247040|dbj|BAB57432.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204321|dbj|BAB95018.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MW2]
 gi|49241562|emb|CAG40248.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244552|emb|CAG42981.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57286026|gb|AAW38120.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus COL]
 gi|82656402|emb|CAI80821.1| ribosome-binding factor A [Staphylococcus aureus RF122]
 gi|87127677|gb|ABD22191.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202538|gb|ABD30348.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|149946271|gb|ABR52207.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH1]
 gi|156721726|dbj|BAF78143.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368245|gb|ABX29216.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259160707|gb|EEW45728.1| ribosome-binding factor A [Staphylococcus aureus 930918-3]
 gi|259163726|gb|EEW48281.1| ribosome-binding factor A [Staphylococcus aureus D30]
 gi|262075177|gb|ACY11150.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|285816952|gb|ADC37439.1| Ribosome-binding factor A [Staphylococcus aureus 04-02981]
 gi|294825066|gb|EFG41488.1| ribosome-binding factor A [Staphylococcus aureus A9754]
 gi|294968795|gb|EFG44817.1| ribosome-binding factor A [Staphylococcus aureus A8819]
 gi|295128115|gb|EFG57749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297178465|gb|EFH37711.1| ribosome-binding factor A [Staphylococcus aureus A8796]
 gi|298694562|gb|ADI97784.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302332876|gb|ADL23069.1| ribosome-binding factor A (P15B PROTEIN) [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|312829664|emb|CBX34506.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131064|gb|EFT87048.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315194158|gb|EFU24551.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198512|gb|EFU28841.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           CGS01]
          Length = 116

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           +S RA RVGE+++  LM +I NN+ +D  +    I+I++V ++ DL  A V+++ L  D 
Sbjct: 2   SSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQAKVFLTVLGNDK 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             +    AL+    FI+  +G  +R LR +PEL + YD S++
Sbjct: 59  EVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIE 99


>gi|125973505|ref|YP_001037415.1| ribosome-binding factor A [Clostridium thermocellum ATCC 27405]
 gi|281417708|ref|ZP_06248728.1| ribosome-binding factor A [Clostridium thermocellum JW20]
 gi|182676539|sp|A3DE43|RBFA_CLOTH RecName: Full=Ribosome-binding factor A
 gi|125713730|gb|ABN52222.1| ribosome-binding factor A [Clostridium thermocellum ATCC 27405]
 gi|281409110|gb|EFB39368.1| ribosome-binding factor A [Clostridium thermocellum JW20]
          Length = 123

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 4/99 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  R+ EE++  +  +I  NE +D  +S+ +ISI+EV ++ DLR A VY+S +  +    
Sbjct: 3   RIERISEEIKREISDII-QNELKDPRLSK-LISITEVNVTKDLRYAKVYVSVMGSEEEKA 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             +  L     FIR  IGR ++ LRY PE+ F  D S++
Sbjct: 61  NSLEGLKSAAGFIRREIGRRVQ-LRYTPEIHFELDNSIE 98


>gi|282916530|ref|ZP_06324288.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770334|ref|ZP_06343226.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus H19]
 gi|282319017|gb|EFB49369.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460481|gb|EFC07571.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus H19]
          Length = 119

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           +S RA RVGE+++  LM +I NN+ +D  +    I+I++V ++ DL  A V+++ L  D 
Sbjct: 5   SSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQAKVFLTVLGNDK 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             +    AL+    FI+  +G  +R LR +PEL + YD S++
Sbjct: 62  EVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIE 102


>gi|170719908|ref|YP_001747596.1| ribosome-binding factor A [Pseudomonas putida W619]
 gi|229568642|sp|B1J2B0|RBFA_PSEPW RecName: Full=Ribosome-binding factor A
 gi|169757911|gb|ACA71227.1| ribosome-binding factor A [Pseudomonas putida W619]
          Length = 132

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S DL  A V+I++  + 
Sbjct: 3   KEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGEE 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +PD V   + ALN    F+R  +GRS++ LR VP+L F +D S+     L+AL+
Sbjct: 60  TPDAVQQSLKALNSAASFLRLHLGRSMQ-LRSVPQLHFHFDESVSRGVHLSALI 112


>gi|26991394|ref|NP_746819.1| ribosome-binding factor A [Pseudomonas putida KT2440]
 gi|148549778|ref|YP_001269880.1| ribosome-binding factor A [Pseudomonas putida F1]
 gi|32171601|sp|Q88DV8|RBFA_PSEPK RecName: Full=Ribosome-binding factor A
 gi|166219394|sp|A5W986|RBFA_PSEP1 RecName: Full=Ribosome-binding factor A
 gi|24986463|gb|AAN70283.1|AE016669_1 ribosome-binding factor A [Pseudomonas putida KT2440]
 gi|148513836|gb|ABQ80696.1| ribosome-binding factor A [Pseudomonas putida F1]
 gi|313500619|gb|ADR61985.1| RbfA [Pseudomonas putida BIRD-1]
          Length = 132

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S DL  A V+I++  + 
Sbjct: 3   KEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGEE 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +PD V   + ALN    F+R  +GRS++ LR VP+L F +D S+     L+AL+
Sbjct: 60  TPDAVQQSLKALNSAASFLRLHLGRSMQ-LRSVPQLHFHFDESVSRGVHLSALI 112


>gi|167035702|ref|YP_001670933.1| ribosome-binding factor A [Pseudomonas putida GB-1]
 gi|189039552|sp|B0KHX7|RBFA_PSEPG RecName: Full=Ribosome-binding factor A
 gi|166862190|gb|ABZ00598.1| ribosome-binding factor A [Pseudomonas putida GB-1]
          Length = 132

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S DL  A V+I++  + 
Sbjct: 3   KEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGEE 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +PD V   + ALN    F+R  +GRS++ LR VP+L F +D S+     L+AL+
Sbjct: 60  TPDAVQQSLKALNSAASFLRLHLGRSMQ-LRSVPQLHFHFDESVSRGVHLSALI 112


>gi|255655323|ref|ZP_05400732.1| ribosome-binding factor A [Clostridium difficile QCD-23m63]
 gi|296451308|ref|ZP_06893048.1| ribosome-binding factor A [Clostridium difficile NAP08]
 gi|296880340|ref|ZP_06904303.1| ribosome-binding factor A [Clostridium difficile NAP07]
 gi|296259914|gb|EFH06769.1| ribosome-binding factor A [Clostridium difficile NAP08]
 gi|296428581|gb|EFH14465.1| ribosome-binding factor A [Clostridium difficile NAP07]
          Length = 126

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 65/107 (60%), Gaps = 4/107 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  R+ EE+R  +  +++N     R+ S  ++S+++V ++ DLR A VY+S+ L    + 
Sbjct: 6   RTRRISEEIRKVVSTMLINGVKDPRITS--MVSVTDVEVTNDLRYAYVYVSI-LGGDEES 62

Query: 71  VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            ++ L     +IR  +G++++ LRY+PE+ F+ D S++    +++L+
Sbjct: 63  TLTGLKSAGGYIRREVGKNIK-LRYIPEIVFKIDDSIEKGMYMDSLI 108


>gi|167856180|ref|ZP_02478918.1| ribosome-binding factor A [Haemophilus parasuis 29755]
 gi|167852702|gb|EDS23978.1| ribosome-binding factor A [Haemophilus parasuis 29755]
          Length = 127

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 7/111 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
           RA RV +E++  +  +IL  E +D  I   ++++S+V +S DL  A V+++   D     
Sbjct: 7   RADRVAQELQKEI-AIILQREVKDPRIG--MVTVSDVEISRDLAYAKVFVTFLFDSDESA 63

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +R +  LN    +IR  +G+++R LR VPELRF YD SL    +++ L+ 
Sbjct: 64  VERGLEGLNKASGYIRTLVGKAMR-LRIVPELRFVYDQSLVEGMRMSNLVT 113


>gi|210622614|ref|ZP_03293274.1| hypothetical protein CLOHIR_01222 [Clostridium hiranonis DSM 13275]
 gi|210154115|gb|EEA85121.1| hypothetical protein CLOHIR_01222 [Clostridium hiranonis DSM 13275]
          Length = 127

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 65/107 (60%), Gaps = 4/107 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  R+ EE++  +  +++N     R+ S  +IS+++V ++ DLR A VY+SL L  + + 
Sbjct: 6   RTRRISEEIKKIIGQMLINGIKDPRITS--MISVTDVDVTNDLRYAFVYVSL-LGGNEEE 62

Query: 71  VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            ++ L     +IR  +G+ ++ LRY+PE+ F+ D S++    +++L+
Sbjct: 63  SLAGLKSAAGYIRREVGKKVK-LRYIPEIMFKVDDSIERGMYMDSLI 108


>gi|49478390|ref|YP_037872.1| ribosome-binding factor A [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52141678|ref|YP_085152.1| ribosome-binding factor A [Bacillus cereus E33L]
 gi|118479031|ref|YP_896182.1| ribosome-binding factor A [Bacillus thuringiensis str. Al Hakam]
 gi|196042166|ref|ZP_03109449.1| ribosome-binding factor A [Bacillus cereus NVH0597-99]
 gi|196044539|ref|ZP_03111774.1| ribosome-binding factor A [Bacillus cereus 03BB108]
 gi|225865790|ref|YP_002751168.1| ribosome-binding factor A [Bacillus cereus 03BB102]
 gi|229092851|ref|ZP_04223985.1| Ribosome-binding factor A [Bacillus cereus Rock3-42]
 gi|229186048|ref|ZP_04313218.1| Ribosome-binding factor A [Bacillus cereus BGSC 6E1]
 gi|301055301|ref|YP_003793512.1| ribosome-binding factor A [Bacillus anthracis CI]
 gi|61214843|sp|Q636L5|RBFA_BACCZ RecName: Full=Ribosome-binding factor A
 gi|61215017|sp|Q6HF04|RBFA_BACHK RecName: Full=Ribosome-binding factor A
 gi|166218421|sp|A0RHI2|RBFA_BACAH RecName: Full=Ribosome-binding factor A
 gi|254789732|sp|C1EP33|RBFA_BACC3 RecName: Full=Ribosome-binding factor A
 gi|49329946|gb|AAT60592.1| ribosome-binding factor A [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51975147|gb|AAU16697.1| ribosome-binding factor A [Bacillus cereus E33L]
 gi|118418256|gb|ABK86675.1| ribosome-binding factor A [Bacillus thuringiensis str. Al Hakam]
 gi|196024574|gb|EDX63246.1| ribosome-binding factor A [Bacillus cereus 03BB108]
 gi|196027018|gb|EDX65642.1| ribosome-binding factor A [Bacillus cereus NVH0597-99]
 gi|225790371|gb|ACO30588.1| ribosome-binding factor A [Bacillus cereus 03BB102]
 gi|228597467|gb|EEK55117.1| Ribosome-binding factor A [Bacillus cereus BGSC 6E1]
 gi|228690473|gb|EEL44256.1| Ribosome-binding factor A [Bacillus cereus Rock3-42]
 gi|300377470|gb|ADK06374.1| ribosome-binding factor A [Bacillus cereus biovar anthracis str.
           CI]
          Length = 118

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  +    +++++V +S DL++ATVYIS L  +   +
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107


>gi|83855206|ref|ZP_00948736.1| ribosome-binding factor A [Sulfitobacter sp. NAS-14.1]
 gi|83941728|ref|ZP_00954190.1| ribosome-binding factor A [Sulfitobacter sp. EE-36]
 gi|83843049|gb|EAP82216.1| ribosome-binding factor A [Sulfitobacter sp. NAS-14.1]
 gi|83847548|gb|EAP85423.1| ribosome-binding factor A [Sulfitobacter sp. EE-36]
          Length = 142

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 5/101 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--DV 66
           S+R LRVGE +R AL  V+   +  D  ++R  I++ EV  S DL++AT Y+ LPL  D 
Sbjct: 16  SQRQLRVGETIRRALSDVLARGDVHDPELNRMSITVGEVRASPDLKIATAYV-LPLGGDG 74

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
             D V+  L  N   +R  + + L  L+Y P+LRF+ D + 
Sbjct: 75  QED-VLKLLARNKGELRRLMAKKL-VLKYAPDLRFQLDETF 113


>gi|167635838|ref|ZP_02394147.1| ribosome-binding factor A [Bacillus anthracis str. A0442]
 gi|170687860|ref|ZP_02879074.1| ribosome-binding factor A [Bacillus anthracis str. A0465]
 gi|218904938|ref|YP_002452772.1| ribosome-binding factor A [Bacillus cereus AH820]
 gi|228916448|ref|ZP_04080014.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928859|ref|ZP_04091891.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935125|ref|ZP_04097952.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947530|ref|ZP_04109820.1| Ribosome-binding factor A [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123324|ref|ZP_04252528.1| Ribosome-binding factor A [Bacillus cereus 95/8201]
 gi|254683482|ref|ZP_05147342.1| ribosome-binding factor A [Bacillus anthracis str. CNEVA-9066]
 gi|254722003|ref|ZP_05183792.1| ribosome-binding factor A [Bacillus anthracis str. A1055]
 gi|254739625|ref|ZP_05197319.1| ribosome-binding factor A [Bacillus anthracis str. Kruger B]
 gi|226736635|sp|B7JJ88|RBFA_BACC0 RecName: Full=Ribosome-binding factor A
 gi|167528795|gb|EDR91553.1| ribosome-binding factor A [Bacillus anthracis str. A0442]
 gi|170668176|gb|EDT18925.1| ribosome-binding factor A [Bacillus anthracis str. A0465]
 gi|218535717|gb|ACK88115.1| ribosome-binding factor A [Bacillus cereus AH820]
 gi|228660100|gb|EEL15736.1| Ribosome-binding factor A [Bacillus cereus 95/8201]
 gi|228812050|gb|EEM58381.1| Ribosome-binding factor A [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824490|gb|EEM70295.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830666|gb|EEM76271.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843027|gb|EEM88109.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 118

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  +    +++++V +S DL++ATVYIS L  +   +
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107


>gi|219870868|ref|YP_002475243.1| ribosome-binding factor A [Haemophilus parasuis SH0165]
 gi|254789752|sp|B8F4P3|RBFA_HAEPS RecName: Full=Ribosome-binding factor A
 gi|219691072|gb|ACL32295.1| ribosome-binding factor A [Haemophilus parasuis SH0165]
          Length = 127

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 7/111 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
           RA RV +E++  +  +IL  E +D  I   ++++S+V +S DL  A V+++   D     
Sbjct: 7   RADRVAQELQKEI-AIILQREVKDPRIG--MVTVSDVEISRDLAYAKVFVTFLFDSDESA 63

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +R +  LN    +IR  +G+++R LR VPELRF YD SL    +++ L+ 
Sbjct: 64  VERGLEGLNKASGYIRTLVGKAMR-LRIVPELRFVYDQSLVEGMRMSNLVT 113


>gi|15895079|ref|NP_348428.1| ribosome-binding factor A [Clostridium acetobutylicum ATCC 824]
 gi|20978633|sp|Q97I50|RBFA_CLOAB RecName: Full=Ribosome-binding factor A
 gi|15024776|gb|AAK79768.1|AE007689_6 Ribosome-binding factor A [Clostridium acetobutylicum ATCC 824]
 gi|325509217|gb|ADZ20853.1| ribosome-binding factor A [Clostridium acetobutylicum EA 2018]
          Length = 121

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           RA R+ EEV+ A+  +I N+    RL S  +IS+ +V ++ DLR A  Y+S+  D +  +
Sbjct: 5   RAGRINEEVKKAISSIIQNDIRDPRLTS--MISVIKVDVTKDLRYAKAYVSILGDEAKKK 62

Query: 71  -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L  +  FIR  +G +++ LRY PE+    DTS++    ++A++
Sbjct: 63  ETMDILKKSESFIRKELGYAVK-LRYTPEVIIELDTSIEKGMHIDAIL 109


>gi|152976177|ref|YP_001375694.1| ribosome-binding factor A [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189039526|sp|A7GRE1|RBFA_BACCN RecName: Full=Ribosome-binding factor A
 gi|152024929|gb|ABS22699.1| ribosome-binding factor A [Bacillus cytotoxicus NVH 391-98]
          Length = 118

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  +    +++++V +S DL++ATVYIS L  +   +
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVKVSGDLQIATVYISVLGDEEQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107


>gi|229031441|ref|ZP_04187441.1| Ribosome-binding factor A [Bacillus cereus AH1271]
 gi|228729730|gb|EEL80710.1| Ribosome-binding factor A [Bacillus cereus AH1271]
          Length = 118

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  +    +++++V +S DL++ATVYIS L  +   +
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107


>gi|42782899|ref|NP_980146.1| ribosome-binding factor A [Bacillus cereus ATCC 10987]
 gi|222097255|ref|YP_002531312.1| ribosome-binding factor a [Bacillus cereus Q1]
 gi|229019005|ref|ZP_04175847.1| Ribosome-binding factor A [Bacillus cereus AH1273]
 gi|229025250|ref|ZP_04181672.1| Ribosome-binding factor A [Bacillus cereus AH1272]
 gi|229162747|ref|ZP_04290704.1| Ribosome-binding factor A [Bacillus cereus R309803]
 gi|229197921|ref|ZP_04324637.1| Ribosome-binding factor A [Bacillus cereus m1293]
 gi|61215104|sp|Q732R1|RBFA_BACC1 RecName: Full=Ribosome-binding factor A
 gi|254789733|sp|B9IV99|RBFA_BACCQ RecName: Full=Ribosome-binding factor A
 gi|42738826|gb|AAS42754.1| ribosome-binding factor A [Bacillus cereus ATCC 10987]
 gi|221241313|gb|ACM14023.1| ribosome-binding factor A [Bacillus cereus Q1]
 gi|228585639|gb|EEK43741.1| Ribosome-binding factor A [Bacillus cereus m1293]
 gi|228620629|gb|EEK77498.1| Ribosome-binding factor A [Bacillus cereus R309803]
 gi|228736078|gb|EEL86651.1| Ribosome-binding factor A [Bacillus cereus AH1272]
 gi|228742333|gb|EEL92491.1| Ribosome-binding factor A [Bacillus cereus AH1273]
          Length = 118

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  +    +++++V +S DL++ATVYIS L  +   +
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107


>gi|47569088|ref|ZP_00239777.1| ribosome-binding factor A [Bacillus cereus G9241]
 gi|228986954|ref|ZP_04147080.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157387|ref|ZP_04285465.1| Ribosome-binding factor A [Bacillus cereus ATCC 4342]
 gi|229174477|ref|ZP_04302009.1| Ribosome-binding factor A [Bacillus cereus MM3]
 gi|47554250|gb|EAL12612.1| ribosome-binding factor A [Bacillus cereus G9241]
 gi|228609037|gb|EEK66327.1| Ribosome-binding factor A [Bacillus cereus MM3]
 gi|228626114|gb|EEK82863.1| Ribosome-binding factor A [Bacillus cereus ATCC 4342]
 gi|228772732|gb|EEM21172.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|324327705|gb|ADY22965.1| ribosome-binding factor A [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 118

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  +    +++++V +S DL++ATVYIS L  +   +
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107


>gi|145298045|ref|YP_001140886.1| ribosome-binding factor A [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166218416|sp|A4SJR6|RBFA_AERS4 RecName: Full=Ribosome-binding factor A
 gi|142850817|gb|ABO89138.1| ribosome-binding factor A [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 144

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 8/112 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RVG++++  +  +IL  E +D  I   ++++S+V +S DL  A VY++ L LD+  +
Sbjct: 7   RTNRVGQQIQREI-ALILQREVKDPRIG--MVTVSDVEVSKDLNYAKVYVTFLQLDIDAE 63

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           R+   +  L     +IR  +G ++R LR VPELRF YD +L    +++ L+ 
Sbjct: 64  RIAEGLKGLTEAAGYIRSLLGSAMR-LRVVPELRFYYDQTLVEGMRISNLVS 114


>gi|254470702|ref|ZP_05084105.1| ribosome-binding factor A [Pseudovibrio sp. JE062]
 gi|211959844|gb|EEA95041.1| ribosome-binding factor A [Pseudovibrio sp. JE062]
          Length = 146

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 7/117 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGE VR  L  +++  +  D  +   +I++ EV MS DLR A V + +P+   D
Sbjct: 13  SQRQLRVGELVRKELSDILIRGQVSDPDLDGVIITVPEVRMSPDLRWADVLV-MPMGGRD 71

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           V    V+ AL  N K++RG++ R +  ++Y  +LRF  DT       +  L+  P I
Sbjct: 72  VEV--VLEALKRNAKYLRGQVARRV-TMKYTCDLRFVADTRFDDDDLITRLLHEPSI 125


>gi|311695957|gb|ADP98830.1| ribosome-binding factor A [marine bacterium HP15]
          Length = 140

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 13/120 (10%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
           P+   R  R+G++++  L  +I   E +D  +   +++++ V +S DL  A +Y+SL   
Sbjct: 2   PREFSRIDRIGDQMQRELAQLI-QREVKDPRVG--MVTVNAVKVSRDLGYADIYVSLLST 58

Query: 64  ---LDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYW-KLNALM 117
               + SP+    I+ LN    F+RG++GR+++ LR VP+LRF +DT LQ Y  K+++L+
Sbjct: 59  EELTEESPEVRESIAVLNKASGFLRGQVGRAMK-LRVVPQLRFHFDT-LQGYSRKMDSLI 116


>gi|256003323|ref|ZP_05428314.1| ribosome-binding factor A [Clostridium thermocellum DSM 2360]
 gi|255992613|gb|EEU02704.1| ribosome-binding factor A [Clostridium thermocellum DSM 2360]
 gi|316940256|gb|ADU74290.1| ribosome-binding factor A [Clostridium thermocellum DSM 1313]
          Length = 123

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 6/100 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  R+ EE++  +  +I  NE +D  +S+ +ISI+EV ++ DLR A VY+S+ +    ++
Sbjct: 3   RIERISEEIKREISDII-QNELKDPRLSK-LISITEVNVTKDLRYAKVYVSV-MGSKEEK 59

Query: 71  V--ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              +  L     FIR  IGR ++ LRY PE+ F  D S++
Sbjct: 60  ANSLEGLKSAAGFIRREIGRRVQ-LRYTPEIHFELDNSIE 98


>gi|303240814|ref|ZP_07327327.1| ribosome-binding factor A [Acetivibrio cellulolyticus CD2]
 gi|302591702|gb|EFL61437.1| ribosome-binding factor A [Acetivibrio cellulolyticus CD2]
          Length = 118

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R +R+ EE+R  +   I+  E +D  +SR +IS++ V ++ DLR A V++S +  D    
Sbjct: 3   RTVRISEEMRKEI-SAIIQGELKDPRLSR-LISVTNVNVTKDLRYAKVFVSIMGSDEEKK 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  +G  ++ LRY PE++F  D S++    ++ L+
Sbjct: 61  NALDGLKSAAGFIRREVGHRIQ-LRYTPEIQFELDNSIEHGAYISKLI 107


>gi|229098280|ref|ZP_04229227.1| Ribosome-binding factor A [Bacillus cereus Rock3-29]
 gi|229104373|ref|ZP_04235042.1| Ribosome-binding factor A [Bacillus cereus Rock3-28]
 gi|229117297|ref|ZP_04246675.1| Ribosome-binding factor A [Bacillus cereus Rock1-3]
 gi|228666197|gb|EEL21661.1| Ribosome-binding factor A [Bacillus cereus Rock1-3]
 gi|228679071|gb|EEL33279.1| Ribosome-binding factor A [Bacillus cereus Rock3-28]
 gi|228685178|gb|EEL39109.1| Ribosome-binding factor A [Bacillus cereus Rock3-29]
          Length = 118

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  +    +++++V +S DL++A VYIS L  D   +
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIAKVYISVLGDDEQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107


>gi|312143663|ref|YP_003995109.1| ribosome-binding factor A [Halanaerobium sp. 'sapolanicus']
 gi|311904314|gb|ADQ14755.1| ribosome-binding factor A [Halanaerobium sp. 'sapolanicus']
          Length = 127

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 64/109 (58%), Gaps = 5/109 (4%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
           +RA+RVGE ++  +  +IL  E +D  I+   +S+++V +S DLR A V++S+   D   
Sbjct: 4   KRAIRVGELLKEEISQIILR-EMKDPRIA--FVSVTDVKVSGDLRHAKVFVSVFGTDKEK 60

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  +  L+    +IR  +G  ++ + + PE+ FRYD S++    ++ ++
Sbjct: 61  EETMEGLDKATGYIRKLVGERVK-IHHTPEIIFRYDDSIEQGVHISKII 108


>gi|254974857|ref|ZP_05271329.1| ribosome-binding factor A [Clostridium difficile QCD-66c26]
 gi|255092244|ref|ZP_05321722.1| ribosome-binding factor A [Clostridium difficile CIP 107932]
 gi|255313984|ref|ZP_05355567.1| ribosome-binding factor A [Clostridium difficile QCD-76w55]
 gi|255516664|ref|ZP_05384340.1| ribosome-binding factor A [Clostridium difficile QCD-97b34]
 gi|255649763|ref|ZP_05396665.1| ribosome-binding factor A [Clostridium difficile QCD-37x79]
 gi|260682919|ref|YP_003214204.1| ribosome-binding factor A [Clostridium difficile CD196]
 gi|260686517|ref|YP_003217650.1| ribosome-binding factor A [Clostridium difficile R20291]
 gi|306519868|ref|ZP_07406215.1| ribosome-binding factor A [Clostridium difficile QCD-32g58]
 gi|260209082|emb|CBA62230.1| ribosome-binding factor A [Clostridium difficile CD196]
 gi|260212533|emb|CBE03487.1| ribosome-binding factor A [Clostridium difficile R20291]
          Length = 126

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 64/107 (59%), Gaps = 4/107 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  R+ EE+R  +  +++N     R+ S  ++S+++V ++ DLR A VY+S+ L    + 
Sbjct: 6   RTRRIAEEIRKVVSTMLINGVKDPRITS--MVSVTDVEVTNDLRYAYVYVSI-LGGDEES 62

Query: 71  VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            ++ L     +IR  +G++++ LRY+PE+ F+ D S++    ++ L+
Sbjct: 63  TLTGLKSAGGYIRREVGKNIK-LRYIPEIVFKLDDSIEKGMYMDNLI 108


>gi|30263814|ref|NP_846191.1| ribosome-binding factor A [Bacillus anthracis str. Ames]
 gi|47529238|ref|YP_020587.1| ribosome-binding factor A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186661|ref|YP_029913.1| ribosome-binding factor A [Bacillus anthracis str. Sterne]
 gi|65321138|ref|ZP_00394097.1| COG0858: Ribosome-binding factor A [Bacillus anthracis str. A2012]
 gi|165872633|ref|ZP_02217264.1| ribosome-binding factor A [Bacillus anthracis str. A0488]
 gi|167639837|ref|ZP_02398106.1| ribosome-binding factor A [Bacillus anthracis str. A0193]
 gi|170706868|ref|ZP_02897326.1| ribosome-binding factor A [Bacillus anthracis str. A0389]
 gi|177652087|ref|ZP_02934633.1| ribosome-binding factor A [Bacillus anthracis str. A0174]
 gi|190568437|ref|ZP_03021344.1| ribosome-binding factor A [Bacillus anthracis Tsiankovskii-I]
 gi|227813281|ref|YP_002813290.1| ribosome-binding factor A [Bacillus anthracis str. CDC 684]
 gi|229600478|ref|YP_002868049.1| ribosome-binding factor A [Bacillus anthracis str. A0248]
 gi|254735849|ref|ZP_05193555.1| ribosome-binding factor A [Bacillus anthracis str. Western North
           America USA6153]
 gi|254756002|ref|ZP_05208033.1| ribosome-binding factor A [Bacillus anthracis str. Vollum]
 gi|254759337|ref|ZP_05211362.1| ribosome-binding factor A [Bacillus anthracis str. Australia 94]
 gi|33301489|sp|Q81WM5|RBFA_BACAN RecName: Full=Ribosome-binding factor A
 gi|254789730|sp|C3P5L3|RBFA_BACAA RecName: Full=Ribosome-binding factor A
 gi|254789731|sp|C3L7B6|RBFA_BACAC RecName: Full=Ribosome-binding factor A
 gi|30258458|gb|AAP27677.1| ribosome-binding factor A [Bacillus anthracis str. Ames]
 gi|47504386|gb|AAT33062.1| ribosome-binding factor A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180588|gb|AAT55964.1| ribosome-binding factor A [Bacillus anthracis str. Sterne]
 gi|164711665|gb|EDR17211.1| ribosome-binding factor A [Bacillus anthracis str. A0488]
 gi|167512238|gb|EDR87615.1| ribosome-binding factor A [Bacillus anthracis str. A0193]
 gi|170128286|gb|EDS97155.1| ribosome-binding factor A [Bacillus anthracis str. A0389]
 gi|172082456|gb|EDT67521.1| ribosome-binding factor A [Bacillus anthracis str. A0174]
 gi|190560441|gb|EDV14419.1| ribosome-binding factor A [Bacillus anthracis Tsiankovskii-I]
 gi|227007093|gb|ACP16836.1| ribosome-binding factor A [Bacillus anthracis str. CDC 684]
 gi|229264886|gb|ACQ46523.1| ribosome-binding factor A [Bacillus anthracis str. A0248]
          Length = 118

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  +    +++++V +S DL++ATVYIS L  +   +
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSRDLQIATVYISVLGDEEQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107


>gi|152978794|ref|YP_001344423.1| ribosome-binding factor A [Actinobacillus succinogenes 130Z]
 gi|171704291|sp|A6VNE1|RBFA_ACTSZ RecName: Full=Ribosome-binding factor A
 gi|150840517|gb|ABR74488.1| ribosome-binding factor A [Actinobacillus succinogenes 130Z]
          Length = 129

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D  P+
Sbjct: 6   KRSDRVAQELQKEV-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDPE 62

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +   +  L     +IR  +G+++R LR VPELRF YD SL    +++ L+ 
Sbjct: 63  AIKQGMKGLEKAAPYIRSLLGKAMR-LRIVPELRFVYDQSLVEGMRMSNLVS 113


>gi|239636252|ref|ZP_04677254.1| ribosome-binding factor A [Staphylococcus warneri L37603]
 gi|239597607|gb|EEQ80102.1| ribosome-binding factor A [Staphylococcus warneri L37603]
          Length = 116

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  +M ++ NN+ +D  +    I+I++V ++ DL    VY++ L      D
Sbjct: 5   RAERVGEQMKKEIMDIV-NNKVKDPRVG--FITITDVELTNDLSQGKVYLTVLGNQKEVD 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               AL+    FI+  +G  +R LR +PEL F YD S++   K+  ++
Sbjct: 62  NTFKALDKAKGFIKSELGSRMR-LRIIPELSFEYDESIEYGNKIERMI 108


>gi|254455287|ref|ZP_05068716.1| ribosome-binding factor A [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082289|gb|EDZ59715.1| ribosome-binding factor A [Candidatus Pelagibacter sp. HTCC7211]
          Length = 122

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
           S+R LRVGE ++ +L  + + NE +   +  + I+++EV MS DL++A  Y+ LPL    
Sbjct: 10  SQRQLRVGEMIKQSLSMIFIRNEAKVPNLETNTITVTEVRMSQDLKIAKAYV-LPLGGKD 68

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            D VI  L      IR  + + +  ++++P+L FR D S +   K+  L+
Sbjct: 69  ADEVIKVLKEYSFLIRKILSQKVV-MKFLPKLLFRKDESFEYAEKIENLI 117


>gi|78485468|ref|YP_391393.1| ribosome-binding factor A [Thiomicrospira crunogena XCL-2]
 gi|123769093|sp|Q31GK4|RBFA_THICR RecName: Full=Ribosome-binding factor A
 gi|78363754|gb|ABB41719.1| ribosome-binding factor A [Thiomicrospira crunogena XCL-2]
          Length = 121

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL----PLDV 66
           R  RV  E+R  LM ++  +    RL   + ++I+E  +S DL +ATVY ++      D 
Sbjct: 7   RPTRVALEIRKTLMEILHRDTKDPRL---EKVNITECKISKDLSIATVYFTIIGVNEKDQ 63

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                I AL     F R  IG+ + NLR  PE+RF YDT  ++   +  L+
Sbjct: 64  PAQDAIKALEKAKGFFRSEIGKRM-NLRITPEVRFFYDTVAENASHIEELI 113


>gi|228992539|ref|ZP_04152466.1| Ribosome-binding factor A [Bacillus pseudomycoides DSM 12442]
 gi|228767173|gb|EEM15809.1| Ribosome-binding factor A [Bacillus pseudomycoides DSM 12442]
          Length = 117

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L  +I + + +D  I    +++++V +S DL++A VYIS L  +   +
Sbjct: 4   RANRVGEQMKKELGEII-SRKIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEQQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  NTLKGLAKAKGFIRAEIGQRIR-LRKTPEITFEFDESIAYGHRIDTLL 107


>gi|307243339|ref|ZP_07525503.1| ribosome-binding factor A [Peptostreptococcus stomatis DSM 17678]
 gi|306493286|gb|EFM65275.1| ribosome-binding factor A [Peptostreptococcus stomatis DSM 17678]
          Length = 115

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 4/109 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R  R+ EEVR  +  +++N     R+ S  +IS+++V ++ DLR A VYIS+ L    
Sbjct: 3   SNRIKRISEEVRKVVSSMLINGIKDPRITS--MISVTDVEVTNDLRYAFVYISI-LGGDR 59

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  +  LN    +IR  +GR ++ LRY PE+ F+ D S++    ++ L+
Sbjct: 60  EASLEGLNSARGYIRREVGRQVK-LRYAPEIVFKIDDSIERGMYMDELI 107


>gi|153004010|ref|YP_001378335.1| ribosome-binding factor A [Anaeromyxobacter sp. Fw109-5]
 gi|166218417|sp|A7H9F5|RBFA_ANADF RecName: Full=Ribosome-binding factor A
 gi|152027583|gb|ABS25351.1| ribosome-binding factor A [Anaeromyxobacter sp. Fw109-5]
          Length = 122

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
           R  RV EE R  L  VI       R+     I+++   MS DL+  T Y+S+   D   +
Sbjct: 6   RPARVAEEFRHGLADVIARGLKDPRVTG--FITVTGAKMSPDLKEVTAYVSIHAEDAERE 63

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           R +  L     F++  + RSLR LR+ P LRF YD S+    ++  L+
Sbjct: 64  RTLEGLKAASTFLQREVARSLR-LRHTPHLRFVYDESVARGDRIERLL 110


>gi|73662804|ref|YP_301585.1| ribosome-binding factor A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642449|sp|Q49X58|RBFA_STAS1 RecName: Full=Ribosome-binding factor A
 gi|72495319|dbj|BAE18640.1| ribosome-binding factor A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 114

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  +M  I NN+ +D  I    ++I++V ++ DL +ATVY++ L  +    
Sbjct: 4   RAERVGEQMKQEIMD-IANNKVKDPRIG--FLTITDVQLTNDLSIATVYLTVLGNEKQKA 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
                L     FI+  +G  +R LR +PEL F YD S+
Sbjct: 61  DTFKGLEKAKGFIKSELGSRMR-LRIIPELNFEYDESI 97


>gi|146297074|ref|YP_001180845.1| ribosome-binding factor A [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166218427|sp|A4XL69|RBFA_CALS8 RecName: Full=Ribosome-binding factor A
 gi|145410650|gb|ABP67654.1| ribosome-binding factor A [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 135

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           RA RV EE++  +  +I  +E +D  I  ++ISI +V MS DLR A V++S+  D + + 
Sbjct: 5   RADRVAEEIKKEISDII-QHELKDPRICAELISIVKVNMSKDLRHAKVFVSI-FDKNREN 62

Query: 71  VISALNC--NIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + S +    N K +IR  I R + NLR+ PE+ F  D S++   +++ ++
Sbjct: 63  ITSTMKALENAKPYIRREISRRI-NLRFSPEISFELDDSIEYGARISQIL 111


>gi|289550938|ref|YP_003471842.1| Ribosome-binding factor A [Staphylococcus lugdunensis HKU09-01]
 gi|315658440|ref|ZP_07911312.1| ribosome-binding factor A [Staphylococcus lugdunensis M23590]
 gi|289180470|gb|ADC87715.1| Ribosome-binding factor A [Staphylococcus lugdunensis HKU09-01]
 gi|315496769|gb|EFU85092.1| ribosome-binding factor A [Staphylococcus lugdunensis M23590]
          Length = 115

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  +M ++ NN+ +D  +    I+I++V ++ DL  A V+++ L  D   D
Sbjct: 5   RAERVGEQMKKEIMDIV-NNKVKDPRVG--FITITDVDLTNDLSQAKVFLTVLGSDKEID 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               AL+    FI+  +   +R LR +PEL F YD S+    K+  ++
Sbjct: 62  DTFKALDKAKGFIKSELATRMR-LRIIPELSFEYDKSIDYGNKIEKMI 108


>gi|182676604|sp|A7Z4T6|RBFA_BACA2 RecName: Full=Ribosome-binding factor A
 gi|328553440|gb|AEB23932.1| ribosome-binding factor A [Bacillus amyloliquefaciens TA208]
          Length = 117

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           S RA RVGE+++  L   I++ + +D  I    +++++V +S DL++A VYIS L  +  
Sbjct: 2   SMRANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGGEKK 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  +  L     FIR  IG  +R LR  PEL F +D S++   ++  L+
Sbjct: 59  KEEALKGLEKAKGFIRSEIGSRIR-LRKTPELEFEFDESIEYGNRIETLI 107


>gi|229086363|ref|ZP_04218540.1| Ribosome-binding factor A [Bacillus cereus Rock3-44]
 gi|228696975|gb|EEL49783.1| Ribosome-binding factor A [Bacillus cereus Rock3-44]
          Length = 118

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  I    +++++V +S DL++A VYIS L  +   +
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEEQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  NTLKGLAKAKGFIRAEIGQRIR-LRKTPEITFEFDESIAYGHRIDTLL 107


>gi|126727800|ref|ZP_01743630.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2150]
 gi|126702927|gb|EBA02030.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2150]
          Length = 144

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K+     S+R LRVGE +R  L  V+   E  D  ++R  I++ EV  S DL++AT +I 
Sbjct: 6   KDSGQGPSQRQLRVGEVIRRTLAEVLQRGEIHDPDLNRMSITVGEVRASPDLKIATAFI- 64

Query: 62  LPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           LPL     +  +  L  N   IR  I + ++ L++ PELRF  D + 
Sbjct: 65  LPLGGEGAEEALDLLRKNRHEIRRVISKKMK-LKHSPELRFLIDVTF 110


>gi|56416865|ref|YP_153939.1| ribosome-binding factor A [Anaplasma marginale str. St. Maries]
 gi|222475230|ref|YP_002563646.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str. Florida]
 gi|254995053|ref|ZP_05277243.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str.
           Mississippi]
 gi|255003212|ref|ZP_05278176.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str. Puerto
           Rico]
 gi|255004340|ref|ZP_05279141.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str.
           Virginia]
 gi|61214728|sp|Q5PAJ6|RBFA_ANAMM RecName: Full=Ribosome-binding factor A
 gi|56388097|gb|AAV86684.1| ribosome-binding factor A [Anaplasma marginale str. St. Maries]
 gi|222419367|gb|ACM49390.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str. Florida]
          Length = 117

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 5   NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP- 63
            P    R+L+V   ++ AL  + +  EF D      ++SIS V +S D R ATV++++  
Sbjct: 5   TPSAGLRSLKVASVLKRALAQLFIR-EFYDL---SSMLSISGVKVSEDTRNATVFVAIGD 60

Query: 64  LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
             V  D V++ALN     IR  + R L+ LRYVP L F+ D    ++ +++ +M   K
Sbjct: 61  KSVDGDEVVAALNDASNSIRRAVFRYLK-LRYVPRLHFKLDVEFDNFLRISEIMATTK 117


>gi|330685669|gb|EGG97310.1| ribosome-binding factor A [Staphylococcus epidermidis VCU121]
          Length = 116

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  +M ++ NN+ +D  +    I+I++V ++ DL    VY++ L      D
Sbjct: 5   RAERVGEQMKKEIMDIV-NNKVKDPRVG--FITITDVELTNDLSQGKVYLTVLGNQKEVD 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               AL     FI+  +G  +R LR +PEL F YD S++   K+  ++
Sbjct: 62  NTFKALEKAKGFIKSELGSRMR-LRIIPELSFEYDESIEYGNKIERMI 108


>gi|157692348|ref|YP_001486810.1| ribosome-binding factor A [Bacillus pumilus SAFR-032]
 gi|166918673|sp|A8FDD3|RBFA_BACP2 RecName: Full=Ribosome-binding factor A
 gi|157681106|gb|ABV62250.1| ribosome-binding factor A [Bacillus pumilus SAFR-032]
          Length = 116

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 5/111 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S RA RVGE+++  L   IL  + +D  I    +++++V +S DL++A VYIS+  D   
Sbjct: 2   SMRATRVGEQMKKEL-GDILGRKLKDPRIG--FLTVTDVEVSGDLQIAKVYISVLGDEKK 58

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +  +  L     +IR  IG  +R LR  PEL F +D S+    ++ +L+ 
Sbjct: 59  REETLKGLAKAKGYIRSEIGNRIR-LRKTPELHFEFDESVDYGNRIESLIA 108


>gi|312134899|ref|YP_004002237.1| ribosome-binding factor a [Caldicellulosiruptor owensensis OL]
 gi|311774950|gb|ADQ04437.1| ribosome-binding factor A [Caldicellulosiruptor owensensis OL]
          Length = 133

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R+ RV EE++  L  +I  +E +D  +  ++ISI +V MS DLR A VY+S+  D   ++
Sbjct: 6   RSDRVSEEIKKELSDII-QHELKDPRLCAELISIVKVNMSKDLRHAKVYVSI-FDKDKEK 63

Query: 71  VISALNC--NIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           V S +    N K +IR  I R + +LR+ PE+ F  D S++   +++ ++
Sbjct: 64  VESTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQIL 112


>gi|256544699|ref|ZP_05472071.1| ribosome-binding factor A [Anaerococcus vaginalis ATCC 51170]
 gi|256399588|gb|EEU13193.1| ribosome-binding factor A [Anaerococcus vaginalis ATCC 51170]
          Length = 127

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 64/112 (57%), Gaps = 2/112 (1%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           + RR L++  +++  L  ++  +    RL    ++SI+EV ++ DL  A +++S+  D +
Sbjct: 2   DKRRTLKISSQMQKELSKILAEDINDPRLSDNVIVSITEVEVTNDLSYADIFVSVLGDEN 61

Query: 68  P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + VI AL+    +++  IG  +R LR +PE RF+YD S++    ++ L+ 
Sbjct: 62  KKESVIEALDQAKGYMKKLIGERMR-LRSMPEFRFKYDNSIEHGVYMDKLIA 112


>gi|313888345|ref|ZP_07822016.1| ribosome-binding factor A [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845748|gb|EFR33138.1| ribosome-binding factor A [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 117

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 4/111 (3%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           N++R  R+ EEVR  +  ++  NE +D  I   + SIS V ++ DL  A VY+S L  D 
Sbjct: 2   NNKRINRISEEVRKTISNIV-QNELKDPRIPS-ITSISHVEVTNDLSFAKVYVSVLGDDY 59

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             D  +  LN    FI+  +   ++ LR +PEL F  D S++   +L+ L+
Sbjct: 60  DRDEAVEGLNSAKGFIKKELAHRVK-LRAMPELIFIKDDSIEKAMELDKLI 109


>gi|332290221|ref|YP_004421073.1| ribosome-binding factor A [Gallibacterium anatis UMN179]
 gi|330433117|gb|AEC18176.1| ribosome-binding factor A [Gallibacterium anatis UMN179]
          Length = 128

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 7/111 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           RA RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D    +
Sbjct: 7   RAQRVAQEIKKEI-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDEDEQQ 63

Query: 71  V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +   +  L+    +IR  +G+++R LR VPELRF YD SL    +++ L+ 
Sbjct: 64  IEQGMLGLHKASPYIRSLLGKAMR-LRIVPELRFVYDNSLVEGMRMSNLVT 113


>gi|255261891|ref|ZP_05341233.1| ribosome-binding factor A [Thalassiobium sp. R2A62]
 gi|255104226|gb|EET46900.1| ribosome-binding factor A [Thalassiobium sp. R2A62]
          Length = 136

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 9/122 (7%)

Query: 2   KNKNPKN---SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
           KN +P+    S R LRVGE +R  L   +   +  D  ++R  I++ EV ++ DL++AT 
Sbjct: 3   KNSSPEGRAPSTRQLRVGELIRRTLSDALQRGDIHDPDLNRMSITVGEVRVTPDLQIATC 62

Query: 59  YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           ++ LPL     D  I+AL  N   +R  +G+ +  L+  P+LRF  D   ++Y +++A  
Sbjct: 63  FV-LPLGGKGGDEAIAALKRNKYELRRLVGK-VTKLKMTPDLRFLID---KTYDQMDATA 117

Query: 118 CL 119
            +
Sbjct: 118 AM 119


>gi|30021900|ref|NP_833531.1| ribosome-binding factor A [Bacillus cereus ATCC 14579]
 gi|163941548|ref|YP_001646432.1| ribosome-binding factor A [Bacillus weihenstephanensis KBAB4]
 gi|206972662|ref|ZP_03233603.1| ribosome-binding factor A [Bacillus cereus AH1134]
 gi|218235779|ref|YP_002368612.1| ribosome-binding factor A [Bacillus cereus B4264]
 gi|218898963|ref|YP_002447374.1| ribosome-binding factor A [Bacillus cereus G9842]
 gi|228902314|ref|ZP_04066471.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 4222]
 gi|228909635|ref|ZP_04073458.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 200]
 gi|228922565|ref|ZP_04085865.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228940899|ref|ZP_04103458.1| Ribosome-binding factor A [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228954087|ref|ZP_04116116.1| Ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960027|ref|ZP_04121691.1| Ribosome-binding factor A [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228966756|ref|ZP_04127800.1| Ribosome-binding factor A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228973828|ref|ZP_04134404.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980417|ref|ZP_04140727.1| Ribosome-binding factor A [Bacillus thuringiensis Bt407]
 gi|229012994|ref|ZP_04170159.1| Ribosome-binding factor A [Bacillus mycoides DSM 2048]
 gi|229047497|ref|ZP_04193087.1| Ribosome-binding factor A [Bacillus cereus AH676]
 gi|229061414|ref|ZP_04198759.1| Ribosome-binding factor A [Bacillus cereus AH603]
 gi|229071309|ref|ZP_04204532.1| Ribosome-binding factor A [Bacillus cereus F65185]
 gi|229081066|ref|ZP_04213576.1| Ribosome-binding factor A [Bacillus cereus Rock4-2]
 gi|229111282|ref|ZP_04240835.1| Ribosome-binding factor A [Bacillus cereus Rock1-15]
 gi|229129087|ref|ZP_04258060.1| Ribosome-binding factor A [Bacillus cereus BDRD-Cer4]
 gi|229134618|ref|ZP_04263428.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST196]
 gi|229146382|ref|ZP_04274753.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST24]
 gi|229152010|ref|ZP_04280205.1| Ribosome-binding factor A [Bacillus cereus m1550]
 gi|229168550|ref|ZP_04296273.1| Ribosome-binding factor A [Bacillus cereus AH621]
 gi|229180087|ref|ZP_04307431.1| Ribosome-binding factor A [Bacillus cereus 172560W]
 gi|229191980|ref|ZP_04318950.1| Ribosome-binding factor A [Bacillus cereus ATCC 10876]
 gi|296504306|ref|YP_003666006.1| ribosome-binding factor A [Bacillus thuringiensis BMB171]
 gi|33301481|sp|Q819Y8|RBFA_BACCR RecName: Full=Ribosome-binding factor A
 gi|226723592|sp|A9VT48|RBFA_BACWK RecName: Full=Ribosome-binding factor A
 gi|226736636|sp|B7IUG9|RBFA_BACC2 RecName: Full=Ribosome-binding factor A
 gi|226736637|sp|B7HDT4|RBFA_BACC4 RecName: Full=Ribosome-binding factor A
 gi|29897456|gb|AAP10732.1| Ribosome-binding factor A [Bacillus cereus ATCC 14579]
 gi|163863745|gb|ABY44804.1| ribosome-binding factor A [Bacillus weihenstephanensis KBAB4]
 gi|206732419|gb|EDZ49600.1| ribosome-binding factor A [Bacillus cereus AH1134]
 gi|218163736|gb|ACK63728.1| ribosome-binding factor A [Bacillus cereus B4264]
 gi|218545696|gb|ACK98090.1| ribosome-binding factor A [Bacillus cereus G9842]
 gi|228591531|gb|EEK49380.1| Ribosome-binding factor A [Bacillus cereus ATCC 10876]
 gi|228603296|gb|EEK60773.1| Ribosome-binding factor A [Bacillus cereus 172560W]
 gi|228614956|gb|EEK72058.1| Ribosome-binding factor A [Bacillus cereus AH621]
 gi|228631359|gb|EEK87993.1| Ribosome-binding factor A [Bacillus cereus m1550]
 gi|228637015|gb|EEK93474.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST24]
 gi|228648879|gb|EEL04904.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST196]
 gi|228654324|gb|EEL10189.1| Ribosome-binding factor A [Bacillus cereus BDRD-Cer4]
 gi|228672058|gb|EEL27349.1| Ribosome-binding factor A [Bacillus cereus Rock1-15]
 gi|228702110|gb|EEL54586.1| Ribosome-binding factor A [Bacillus cereus Rock4-2]
 gi|228711763|gb|EEL63715.1| Ribosome-binding factor A [Bacillus cereus F65185]
 gi|228717837|gb|EEL69485.1| Ribosome-binding factor A [Bacillus cereus AH603]
 gi|228723744|gb|EEL75099.1| Ribosome-binding factor A [Bacillus cereus AH676]
 gi|228748248|gb|EEL98108.1| Ribosome-binding factor A [Bacillus mycoides DSM 2048]
 gi|228779237|gb|EEM27494.1| Ribosome-binding factor A [Bacillus thuringiensis Bt407]
 gi|228785853|gb|EEM33856.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792855|gb|EEM40413.1| Ribosome-binding factor A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228799543|gb|EEM46496.1| Ribosome-binding factor A [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228805653|gb|EEM52243.1| Ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228818735|gb|EEM64801.1| Ribosome-binding factor A [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228836994|gb|EEM82335.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228849924|gb|EEM94755.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 200]
 gi|228857283|gb|EEN01786.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 4222]
 gi|296325358|gb|ADH08286.1| ribosome-binding factor A [Bacillus thuringiensis BMB171]
 gi|326941577|gb|AEA17473.1| ribosome-binding factor A [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 118

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  I    +++++V +S DL++A VYIS L  +   +
Sbjct: 4   RANRVGEQMKKEL-GDIISRKIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEEQKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 61  NTLKGLAKAKGFIRSEIGQRIR-LRKTPEITFEFDESIGYGHRIDTLL 107


>gi|154686082|ref|YP_001421243.1| ribosome-binding factor A [Bacillus amyloliquefaciens FZB42]
 gi|308173628|ref|YP_003920333.1| ribosome-binding factor A [Bacillus amyloliquefaciens DSM 7]
 gi|154351933|gb|ABS74012.1| RbfA [Bacillus amyloliquefaciens FZB42]
 gi|307606492|emb|CBI42863.1| ribosome-binding factor A [Bacillus amyloliquefaciens DSM 7]
 gi|328911769|gb|AEB63365.1| Ribosome-binding factor A [Bacillus amyloliquefaciens LL3]
          Length = 115

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L   I++ + +D  I    +++++V +S DL++A VYIS L  +   +
Sbjct: 2   RANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGGEKKKE 58

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG  +R LR  PEL F +D S++   ++  L+
Sbjct: 59  EALKGLEKAKGFIRSEIGSRIR-LRKTPELEFEFDESIEYGNRIETLI 105


>gi|293526627|ref|ZP_06671312.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           M1015]
 gi|290920699|gb|EFD97762.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
           M1015]
          Length = 130

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           +S RA RVGE+++  LM +I NN+ +D  +    I+I++V ++ DL    V+++ L  D 
Sbjct: 16  SSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQVKVFLTVLGNDK 72

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             +    AL+    FI+  +G  +R LR +PEL + YD S++
Sbjct: 73  EVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIE 113


>gi|212696547|ref|ZP_03304675.1| hypothetical protein ANHYDRO_01085 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325847937|ref|ZP_08170108.1| ribosome-binding factor A [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|212676483|gb|EEB36090.1| hypothetical protein ANHYDRO_01085 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325480806|gb|EGC83860.1| ribosome-binding factor A [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 127

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 2/112 (1%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           + RR L++  +++  L  ++  +    RL    ++SI++V ++ DL  A +++S L  D 
Sbjct: 2   DKRRTLKISSQMQKELSKILAEDINDPRLSDNVIVSITDVEVTNDLSYADIFVSVLGDDS 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + VI AL     +++  IG  +R LR +PE RF+YD S++    ++ L+ 
Sbjct: 62  KKESVIEALEQAKGYMKKLIGERMR-LRSMPEFRFKYDNSIEHGVYMDKLIA 112


>gi|302872112|ref|YP_003840748.1| ribosome-binding factor A [Caldicellulosiruptor obsidiansis OB47]
 gi|302574971|gb|ADL42762.1| ribosome-binding factor A [Caldicellulosiruptor obsidiansis OB47]
          Length = 132

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R+ RV EE++  L  +I  +E +D  +  ++IS+ +V MS DLR A VY+S+  D   ++
Sbjct: 5   RSDRVSEEIKKELSDII-QHELKDPRLCAELISVVKVNMSKDLRYAKVYVSI-FDKDKEK 62

Query: 71  VISALNC--NIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           V S +    N K +IR  I R + +LR+ PE+ F  D S++   +++ ++
Sbjct: 63  VESTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQIL 111


>gi|317493627|ref|ZP_07952048.1| ribosome-binding protein A [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918570|gb|EFV39908.1| ribosome-binding protein A [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 136

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 7/116 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  RV +E++  +  +IL  E +D  I   ++++S V +S DL  A V+++   D
Sbjct: 2   AKEFSRTQRVSQEMQKEI-AIILQREVKDPRIG--MVTVSGVEVSRDLAYAKVFVTFLND 58

Query: 66  VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             P+ V   + AL+    FIR  IG+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 59  SDPNAVRVGLKALHEASGFIRMLIGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 113


>gi|229824771|ref|ZP_04450840.1| hypothetical protein GCWU000182_00120 [Abiotrophia defectiva ATCC
           49176]
 gi|229791100|gb|EEP27214.1| hypothetical protein GCWU000182_00120 [Abiotrophia defectiva ATCC
           49176]
          Length = 128

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS + +R+  EV+ AL  +I       R+ S  + S+++V ++ DL+ A V++S+  D 
Sbjct: 3   KNSIKNVRINSEVQRALSELIRMGVKDPRVSS--LTSVTDVEVAPDLKTAKVFVSVLGDE 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              +  +  L   + ++R ++ +S+ NLR  PELRF  DTS++    ++AL+
Sbjct: 61  KKQKDTLEGLKSAMPYLRSQLAKSI-NLRNTPELRFHLDTSIEYGMHMSALI 111


>gi|89067209|ref|ZP_01154722.1| ribosome-binding factor A [Oceanicola granulosus HTCC2516]
 gi|89046778|gb|EAR52832.1| ribosome-binding factor A [Oceanicola granulosus HTCC2516]
          Length = 143

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 7/122 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
           S+R LRVGE +R  L  V+   +  D  ++   I++SEV  + DL++AT Y+ LPL   D
Sbjct: 16  SQRQLRVGELIRRTLSDVLARGDVHDPDLTGMSITVSEVQTTPDLKIATAYV-LPLGGRD 74

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
           V     + AL  N   +R  + ++L  L++ P+LRFR D +         +   P++   
Sbjct: 75  VEV--ALKALARNKGELRRAVSKNL-TLKFAPDLRFRVDETFDRIDDTRRMFNEPRVRQD 131

Query: 126 LE 127
           +E
Sbjct: 132 IE 133


>gi|330721902|gb|EGG99855.1| Ribosome-binding factor A [gamma proteobacterium IMCC2047]
          Length = 130

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 7/113 (6%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           +S R  RV ++++  L  +I   E +D  +   ++++S V +S DL  A V+I+ L  D 
Sbjct: 3   DSSRRQRVADQIQKELAGLI-QREMKDPRLG--MVTVSAVDVSRDLAYADVFITMLGKDD 59

Query: 67  SPDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  R   +  L     F+RG++ R++R LR VP LRFRYD S++   +L++L+
Sbjct: 60  AEARQQTLDILGRGAGFLRGKLARAMR-LRIVPALRFRYDESIERGARLSSLI 111


>gi|222529044|ref|YP_002572926.1| ribosome-binding factor A [Caldicellulosiruptor bescii DSM 6725]
 gi|254789728|sp|B9MR49|RBFA_ANATD RecName: Full=Ribosome-binding factor A
 gi|222455891|gb|ACM60153.1| ribosome-binding factor A [Caldicellulosiruptor bescii DSM 6725]
          Length = 132

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 6/116 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R+ RV EE++  L  +I  ++ +D  +  ++ISI +V MS DLR A VY+S+  D   ++
Sbjct: 5   RSDRVSEEIKKELSDII-QHDLKDPRLCAELISIVKVNMSKDLRHAKVYVSI-FDKDKEK 62

Query: 71  V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
           V   + AL     +IR  I R + +LR+ PE+ F  D S++   +++ ++    IP
Sbjct: 63  VETTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQILNQLNIP 117


>gi|314933449|ref|ZP_07840814.1| ribosome-binding factor A [Staphylococcus caprae C87]
 gi|313653599|gb|EFS17356.1| ribosome-binding factor A [Staphylococcus caprae C87]
          Length = 116

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 5/99 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  +M ++ NN+ +D  +    ++I++V ++ DL  A VY++ L  +   D
Sbjct: 5   RAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSHAKVYLTVLGSNKEID 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
               AL     FI+  +G  +R LR +P+L F YD S++
Sbjct: 62  NTFKALEKAKGFIKSELGSRMR-LRIIPDLTFEYDKSIE 99


>gi|326791496|ref|YP_004309317.1| ribosome-binding factor A [Clostridium lentocellum DSM 5427]
 gi|326542260|gb|ADZ84119.1| ribosome-binding factor A [Clostridium lentocellum DSM 5427]
          Length = 118

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R  R+ EE+R  +  ++  ++ +D  +   +IS+  V  + DL+ A V+IS+  D   
Sbjct: 3   SQRLTRINEEMRREIAEIV-RSDIKDPGVQDAMISVIAVETTNDLKTAKVFISVLQDNKK 61

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +  ++AL     +IR  I R + NLR  PEL FR D S++   +++ ++ 
Sbjct: 62  EAALAALTKAQGYIRKEIARRI-NLRNTPELLFRLDESIERGMQMSKMIA 110


>gi|33239584|ref|NP_874526.1| ribosome-binding factor A [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|39931797|sp|Q7VE81|RBFA_PROMA RecName: Full=Ribosome-binding factor A
 gi|33237109|gb|AAP99178.1| Ribosome-binding factor A [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 130

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
            SRR  +V   +R   M  +L+N  +D+ ++  +I+I+EV +S DL+   +++S+   ++
Sbjct: 3   QSRRVEKVAALIRKE-MSELLSNGIRDQRVNTTMITITEVEVSGDLQHCKIFVSIYGNEI 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             D V S L  +  F++G +GR L+ +R  PE+ F+ D  ++
Sbjct: 62  QKDEVFSGLEASQSFLKGELGRRLQ-MRRAPEVVFKLDRGME 102


>gi|251797396|ref|YP_003012127.1| ribosome-binding factor A [Paenibacillus sp. JDR-2]
 gi|247545022|gb|ACT02041.1| ribosome-binding factor A [Paenibacillus sp. JDR-2]
          Length = 118

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RVGE+++  L  +I   E +D  I    I+++ V  + DL  A VY+S L  +   +
Sbjct: 5   RVGRVGEQIKKELSQII-QTELKDPRIG--FITVTGVEATSDLSQARVYLSVLGSEEQKE 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL     ++R  +G+ +R LR+ PEL F++D+S++   ++  L+
Sbjct: 62  ETLKALGKANGYLRSELGKRMR-LRHTPELLFKFDSSIEYGSRIEGLL 108


>gi|297184032|gb|ADI20152.1| ribosome-binding factor a [uncultured alpha proteobacterium
           EB080_L06A09]
          Length = 135

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 5/105 (4%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           K P  S+R LRVGE +R A+  V+L  +  D  ++   I++ EV  + DL++A VY+ LP
Sbjct: 10  KGP--SQRQLRVGEMLRRAVSDVLLRGDIHDTDLAHVSITVGEVRSTPDLKLALVYV-LP 66

Query: 64  L-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           L   + + VI+ALN N   IR  + + L +L+Y P+L+F  D + 
Sbjct: 67  LGGQNAEIVINALNKNKYEIRRSVNK-LVSLKYSPDLKFVLDRTF 110


>gi|322831215|ref|YP_004211242.1| ribosome-binding factor A [Rahnella sp. Y9602]
 gi|321166416|gb|ADW72115.1| ribosome-binding factor A [Rahnella sp. Y9602]
          Length = 137

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  RV +E++  +  +IL  E +D  +   + ++S V +S DL  A V+++  LD
Sbjct: 2   AKEFSRTQRVSQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTF-LD 57

Query: 66  V------SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
           V       PDRV   I AL     FIR  IG+++R LR VPEL F YD SL    +++ L
Sbjct: 58  VLTTDNHDPDRVKNGIKALQDASGFIRTLIGKAMR-LRVVPELTFAYDNSLVEGMRMSNL 116

Query: 117 MC 118
           + 
Sbjct: 117 VT 118


>gi|168207529|ref|ZP_02633534.1| ribosome-binding factor A [Clostridium perfringens E str. JGS1987]
 gi|170661132|gb|EDT13815.1| ribosome-binding factor A [Clostridium perfringens E str. JGS1987]
          Length = 116

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 5/109 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
           R  R+ EEVR  +  +I N     RL +  ++S+++V ++ DLR A V++SL    D   
Sbjct: 5   RGKRINEEVRKEVSDIIRNQIKDPRLTA--MVSVTQVEVTKDLRYAKVFVSLFAKNDEEK 62

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  + AL  +  FIR  +G  ++ LR  PE+ F  DTS+ +   + +L+
Sbjct: 63  EESLKALKSSAGFIRREVGNRVK-LRSTPEILFEEDTSIDNAMYIESLL 110


>gi|283788205|ref|YP_003368070.1| ribosome-binding factor A [Citrobacter rodentium ICC168]
 gi|182676606|sp|A9MP37|RBFA_SALAR RecName: Full=Ribosome-binding factor A
 gi|282951659|emb|CBG91359.1| ribosome-binding factor A [Citrobacter rodentium ICC168]
          Length = 133

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|170765473|ref|ZP_02900284.1| ribosome-binding factor A [Escherichia albertii TW07627]
 gi|170124619|gb|EDS93550.1| ribosome-binding factor A [Escherichia albertii TW07627]
          Length = 133

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|327441009|dbj|BAK17374.1| ribosome-binding factor A [Solibacillus silvestris StLB046]
          Length = 114

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
           S R+ RV E+++  +  +I       R+     +++++V ++ DL+ ATVYI SL  D  
Sbjct: 2   SLRSNRVAEQMKKEITEIIARKIKDPRV---GFVTVTDVAVTGDLQQATVYITSLGNDRE 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               + AL     FIR  +G  +R LR  PEL F +DT+++   K++AL+
Sbjct: 59  RAETLQALEKASGFIRSEVGSRIR-LRRTPELAFEFDTAIEYGNKIDALL 107


>gi|315634098|ref|ZP_07889387.1| ribosome-binding factor A [Aggregatibacter segnis ATCC 33393]
 gi|315477348|gb|EFU68091.1| ribosome-binding factor A [Aggregatibacter segnis ATCC 33393]
          Length = 128

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ RV +E++  +  VIL  E +D  IS  ++++S+V +S DL  A V+++   D    
Sbjct: 6   KRSDRVAQEIQKEI-AVILQREVKDPRIS--MVTVSDVEVSSDLAYAKVFVTFLFDHDEQ 62

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +   +  L     +IR  +G+++R LR VPE+RF YD SL    +++ L+ 
Sbjct: 63  AIAQGMKGLEKAAPYIRTLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113


>gi|57234294|ref|YP_181705.1| ribosome-binding factor A [Dehalococcoides ethenogenes 195]
 gi|123618614|sp|Q3Z7U4|RBFA_DEHE1 RecName: Full=Ribosome-binding factor A
 gi|57224742|gb|AAW39799.1| ribosome-binding factor A [Dehalococcoides ethenogenes 195]
          Length = 118

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 6/111 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           SRR  ++ +  R A +  +L  E +D RL +  ++S++EV +S D+R ATVY+S L  D 
Sbjct: 2   SRRVKKLNQLFR-ADISALLQKEVRDPRLDT--LLSVNEVDVSEDMRHATVYVSHLAGDE 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             D +++ALN    F R  I +   ++RY+P   F +D +++   +LN L+
Sbjct: 59  HKDEILAALNAAAGFFRTEIAKKT-DIRYMPVFNFIWDDTIERGVRLNTLI 108


>gi|194014192|ref|ZP_03052809.1| ribosome-binding factor A [Bacillus pumilus ATCC 7061]
 gi|194013218|gb|EDW22783.1| ribosome-binding factor A [Bacillus pumilus ATCC 7061]
          Length = 116

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 5/111 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S RA RVGE+++  L   IL  + +D  I    +++++V ++ DL++A VYIS+  D   
Sbjct: 2   SMRATRVGEQMKKEL-GDILGRKLKDPRIG--FLTVTDVEVTGDLQIAKVYISVLGDEKK 58

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +  +  L     +IR  IG  +R LR  PEL F +D S+    ++ +L+ 
Sbjct: 59  REETLKGLAKAKGYIRSEIGNRIR-LRKTPELHFEFDESVDYGNRIESLIA 108


>gi|304404294|ref|ZP_07385956.1| ribosome-binding factor A [Paenibacillus curdlanolyticus YK9]
 gi|304347272|gb|EFM13104.1| ribosome-binding factor A [Paenibacillus curdlanolyticus YK9]
          Length = 118

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RVGE+++  L  +I   E +D  I    I+++ V ++ DL  A VY+S L  D   +
Sbjct: 5   RVGRVGEQIKKELSQII-QTELKDPRIG--FITVTGVDVTNDLSQAKVYLSVLGSDEQKE 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + A+     FIR  +G+ +R LR+ P L F++D S+    ++ AL+
Sbjct: 62  ETLKAIARGTGFIRSELGKRMR-LRHTPVLLFKFDASIAYGSRIEALL 108


>gi|227499289|ref|ZP_03929401.1| ribosome-binding factor A [Anaerococcus tetradius ATCC 35098]
 gi|227218640|gb|EEI83874.1| ribosome-binding factor A [Anaerococcus tetradius ATCC 35098]
          Length = 125

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 2/112 (1%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           N RR  R+  EV+  L  ++ ++    RL +  ++SI++V ++ DL  A  YIS L  + 
Sbjct: 2   NKRRTERISSEVKKELSKILRDDLSDPRLSNEAMVSITDVEVTNDLSFADCYISVLGDEQ 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + V+ AL+    +I+  IG  +R LR +PE RF+ D S++    ++ L+ 
Sbjct: 62  KKEDVLDALDQAKGYIKILIGERMR-LRSMPEFRFKLDNSIEHGAYMDKLIA 112


>gi|161506149|ref|YP_001573261.1| ribosome-binding factor A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867496|gb|ABX24119.1| hypothetical protein SARI_04339 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 145

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 15  KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 72

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 73  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 126


>gi|117620712|ref|YP_857793.1| ribosome-binding factor A [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166218415|sp|A0KNE2|RBFA_AERHH RecName: Full=Ribosome-binding factor A
 gi|117562119|gb|ABK39067.1| ribosome-binding factor A [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 144

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 8/112 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RVG++++  +  +IL  E +D  I   ++++S+V +S DL  A VY++ L L+   +
Sbjct: 7   RTRRVGQQIQREI-ALILQREVKDPRIG--MVTVSDVEVSRDLNYAKVYVTFLQLENDAE 63

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           R+   + AL     +IR  +G ++R LR VPELRF YD +L    +L+ L+ 
Sbjct: 64  RIKEGLKALTEAAGYIRSLLGSAMR-LRVVPELRFFYDQTLVEGMRLSNLVT 114


>gi|50119660|ref|YP_048827.1| ribosome-binding factor A [Pectobacterium atrosepticum SCRI1043]
 gi|261820129|ref|YP_003258235.1| ribosome-binding factor A [Pectobacterium wasabiae WPP163]
 gi|61214938|sp|Q6D9A4|RBFA_ERWCT RecName: Full=Ribosome-binding factor A
 gi|49610186|emb|CAG73628.1| ribosome-binding factor A [Pectobacterium atrosepticum SCRI1043]
 gi|261604142|gb|ACX86628.1| ribosome-binding factor A [Pectobacterium wasabiae WPP163]
          Length = 132

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 7/115 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +I+  E +D  I   + ++S V +S DL  A V+++   D 
Sbjct: 3   KEFSRTQRVAQEMQKEI-AIIIQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLNDN 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            P++V   + AL     FIR  IG+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 60  EPEQVKIAVKALQDASGFIRMMIGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 113


>gi|149909279|ref|ZP_01897935.1| ribosome-binding factor A [Moritella sp. PE36]
 gi|149807596|gb|EDM67544.1| ribosome-binding factor A [Moritella sp. PE36]
          Length = 141

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 8/117 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PL 64
            K   R+ RV ++++  +   IL  E +D  I   ++++S + +S DL  A VY++   +
Sbjct: 2   AKEFSRSRRVAQQLQQEVAR-ILQREVKDPRIG--MVTVSSIDLSRDLSYAKVYVTFFNI 58

Query: 65  DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           D   DRV   I+AL     +IR  +G +++ LR VPELRF YD +L    +L++L+ 
Sbjct: 59  DNDEDRVKEGIAALTAASGYIRSLVGSAMK-LRIVPELRFIYDNTLVEGMRLSSLVT 114


>gi|309389233|gb|ADO77113.1| ribosome-binding factor A [Halanaerobium praevalens DSM 2228]
          Length = 127

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 62/103 (60%), Gaps = 5/103 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
           +++RA+RVGE ++  +  ++L  E +D  I    +SI++V +S DLR A V+IS+   + 
Sbjct: 2   SNKRAVRVGELLKEEISQIVLR-EMKDPRIG--FVSITDVEVSGDLRHAKVFISVYGTEK 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
             +  ++ L     F+R  +G  ++ + + PE+ FRYD S+++
Sbjct: 59  EKEETLAGLQQAQGFVRKLVGERVK-IHHTPEIIFRYDDSIEN 100


>gi|157148736|ref|YP_001456055.1| ribosome-binding factor A [Citrobacter koseri ATCC BAA-895]
 gi|166218429|sp|A8AQ56|RBFA_CITK8 RecName: Full=Ribosome-binding factor A
 gi|157085941|gb|ABV15619.1| hypothetical protein CKO_04566 [Citrobacter koseri ATCC BAA-895]
          Length = 133

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAVKAGIKALQEASGFIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|253682529|ref|ZP_04863326.1| ribosome-binding factor A [Clostridium botulinum D str. 1873]
 gi|253562241|gb|EES91693.1| ribosome-binding factor A [Clostridium botulinum D str. 1873]
          Length = 121

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R  R+ EEVR  +  +I ++    RL +  ++S++ V ++ DLR A V+IS+   + S +
Sbjct: 5   RLGRINEEVRKEISNIIRDDIHDPRLTA--MVSVTRVEVTNDLRYAKVFISIFGSNNSKE 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + AL  +  FIR  +G  ++ LRY PE+    D S++    +N L+ 
Sbjct: 63  ETLEALKSSAGFIRREVGHRVK-LRYTPEIVLELDESIEHGMHINDLLS 110


>gi|223044222|ref|ZP_03614259.1| ribosome-binding factor A [Staphylococcus capitis SK14]
 gi|222442372|gb|EEE48480.1| ribosome-binding factor A [Staphylococcus capitis SK14]
          Length = 116

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  +M ++ NN+ +D  +    ++I++V ++ DL  A VY++ L      D
Sbjct: 5   RAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSHAKVYLTVLGSKKEVD 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
               AL     FI+  +G  +R LR +P+L F YD S++
Sbjct: 62  NTFKALEKAKGFIKSELGSRMR-LRIIPDLTFEYDESIE 99


>gi|331002479|ref|ZP_08325997.1| ribosome-binding factor A [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330410295|gb|EGG89729.1| ribosome-binding factor A [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 123

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS ++  +  EV  A+   I+  E +D  ++  + S+++  ++ DL+ AT+Y+S L  D
Sbjct: 3   KNSLKSTMINSEVMKAVSE-IMRGEVKDPRVA-PMTSVTDAEVTTDLKYATIYVSVLGDD 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               + ++ L  +  FIR  + R L NLR  PEL+F  D SL    K++ L+
Sbjct: 61  EQSKKTLAGLKSSSGFIRKELARRL-NLRNTPELKFVLDESLAYGMKMDKLI 111


>gi|332999246|gb|EGK18832.1| ribosome-binding factor A [Shigella flexneri K-272]
 gi|333014968|gb|EGK34312.1| ribosome-binding factor A [Shigella flexneri K-227]
          Length = 133

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSSVEMSRDLAYAKVYVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|187778990|ref|ZP_02995463.1| hypothetical protein CLOSPO_02585 [Clostridium sporogenes ATCC
           15579]
 gi|187772615|gb|EDU36417.1| hypothetical protein CLOSPO_02585 [Clostridium sporogenes ATCC
           15579]
          Length = 120

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           RA R+ EEV+  +  +I N+    RL +  ++S+++V ++ DL+ A VY+S+   + + +
Sbjct: 5   RAGRINEEVKKEVSSIIHNDIKDPRLSA--MVSVTDVNVTKDLKYAKVYVSIFGNEKAKE 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL  ++ FIR  IGR ++ LR  PE+    D S++    ++ L+
Sbjct: 63  ESLQALKSSVGFIRKEIGRRVK-LRNTPEVIIEVDNSIERGMHIDELL 109


>gi|170758382|ref|YP_001787728.1| ribosome-binding factor A [Clostridium botulinum A3 str. Loch
           Maree]
 gi|238688515|sp|B1KWK6|RBFA_CLOBM RecName: Full=Ribosome-binding factor A
 gi|169405371|gb|ACA53782.1| ribosome-binding factor A [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 120

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           RA R+ EEV+  +  +I N+    RL +  ++S+++V ++ DL+ A VY+S+   + + +
Sbjct: 5   RAGRINEEVKKEVSSIIHNDIKDPRLSA--MVSVTDVDVTKDLKYAKVYVSIFGNEKAKE 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL  ++ FIR  IGR ++ LR  PE+    D S++    ++ L+
Sbjct: 63  ESLQALKSSVGFIRKEIGRRVK-LRNTPEVIIEVDNSIERGMHIDELL 109


>gi|118444128|ref|YP_878208.1| ribosome-binding factor A [Clostridium novyi NT]
 gi|166218434|sp|A0Q0Q6|RBFA_CLONN RecName: Full=Ribosome-binding factor A
 gi|118134584|gb|ABK61628.1| ribosome-binding factor A [Clostridium novyi NT]
          Length = 121

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R  R+ EEV+  +  +I ++    RL    ++S++ V ++ DLR A V+IS+   D S  
Sbjct: 5   RLGRINEEVKKEISNIIRDDIHDPRLTG--MVSVTRVEVTNDLRYAKVFISIFGSDESKT 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + AL  +  FIR  +G  ++ LRY PE+    D S++    +N L+ 
Sbjct: 63  ETLEALKSSAGFIRREVGHRVK-LRYTPEILLELDESIEHGMHINDLLS 110


>gi|228474959|ref|ZP_04059687.1| ribosome-binding factor A [Staphylococcus hominis SK119]
 gi|314936569|ref|ZP_07843916.1| ribosome-binding factor A [Staphylococcus hominis subsp. hominis
           C80]
 gi|228270944|gb|EEK12332.1| ribosome-binding factor A [Staphylococcus hominis SK119]
 gi|313655188|gb|EFS18933.1| ribosome-binding factor A [Staphylococcus hominis subsp. hominis
           C80]
          Length = 116

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  +M +I NN+ +D  +    I+I++V ++ DL  A V+++ L      +
Sbjct: 5   RAERVGEQMKKEVMDII-NNKVKDPRVG--FITITDVELTNDLSQAKVFLTVLGNKKEVN 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               AL+    FI+  +G  +R LR VPEL F YD S++   K+  ++
Sbjct: 62  DTFKALDKAKGFIKSELGSRMR-LRIVPELFFEYDESIEYGNKIEKMI 108


>gi|301156204|emb|CBW15675.1| 30s ribosome binding factor [Haemophilus parainfluenzae T3T1]
          Length = 128

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
           +R+ RV +E++  +   IL  E +D  I   ++++S+V +S DL  A V+++   D   V
Sbjct: 6   KRSDRVAQELQKEI-ATILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFDHDEV 62

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + ++ +  L     +IR  +G+++R LR VPE+RF YD SL    +++ L+ 
Sbjct: 63  AIEQGMKGLEKAAPYIRSLVGKAMR-LRIVPEIRFFYDQSLVEGMRMSNLVT 113


>gi|300897931|ref|ZP_07116310.1| ribosome-binding factor A [Escherichia coli MS 198-1]
 gi|301022022|ref|ZP_07185965.1| ribosome-binding factor A [Escherichia coli MS 69-1]
 gi|284923191|emb|CBG36285.1| ribosome-binding factor A [Escherichia coli 042]
 gi|300358361|gb|EFJ74231.1| ribosome-binding factor A [Escherichia coli MS 198-1]
 gi|300397737|gb|EFJ81275.1| ribosome-binding factor A [Escherichia coli MS 69-1]
          Length = 143

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 13  KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 70

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 71  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 124


>gi|229520935|ref|ZP_04410357.1| ribosome-binding factor A [Vibrio cholerae TM 11079-80]
 gi|229342168|gb|EEO07164.1| ribosome-binding factor A [Vibrio cholerae TM 11079-80]
          Length = 136

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M+N  PK   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V++
Sbjct: 1   MRNDMPKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFV 57

Query: 61  SLPL--DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +     + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+ 
Sbjct: 58  TFLCIGEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 116


>gi|237706080|ref|ZP_04536561.1| ribosome-binding factor A [Escherichia sp. 3_2_53FAA]
 gi|254038333|ref|ZP_04872391.1| ribosome-binding factor A [Escherichia sp. 1_1_43]
 gi|293412542|ref|ZP_06655265.1| ribosome-binding factor A [Escherichia coli B354]
 gi|293416600|ref|ZP_06659239.1| ribosome-binding factor A [Escherichia coli B185]
 gi|332280002|ref|ZP_08392415.1| ribosome-binding factor A [Shigella sp. D9]
 gi|26110178|gb|AAN82364.1|AE016767_124 Ribosome-binding factor A [Escherichia coli CFT073]
 gi|91074162|gb|ABE09043.1| ribosome-binding factor A [Escherichia coli UTI89]
 gi|226839957|gb|EEH71978.1| ribosome-binding factor A [Escherichia sp. 1_1_43]
 gi|226899120|gb|EEH85379.1| ribosome-binding factor A [Escherichia sp. 3_2_53FAA]
 gi|291431956|gb|EFF04939.1| ribosome-binding factor A [Escherichia coli B185]
 gi|291469313|gb|EFF11804.1| ribosome-binding factor A [Escherichia coli B354]
 gi|332102354|gb|EGJ05700.1| ribosome-binding factor A [Shigella sp. D9]
          Length = 139

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 9   KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 66

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 67  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 120


>gi|331648968|ref|ZP_08350056.1| ribosome-binding factor A [Escherichia coli M605]
 gi|331042715|gb|EGI14857.1| ribosome-binding factor A [Escherichia coli M605]
          Length = 133

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 3   KEFDRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|332799225|ref|YP_004460724.1| Ribosome-binding factor A [Tepidanaerobacter sp. Re1]
 gi|332696960|gb|AEE91417.1| Ribosome-binding factor A [Tepidanaerobacter sp. Re1]
          Length = 123

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           R  R+ EE++  +  +I N++ +D  I   +IS+++V ++ DL  ATV+IS   D +  D
Sbjct: 5   RNERIAEEIKKGISEII-NSDLKDPRIE-GLISVTKVKVTKDLGHATVFISFYGDKTKRD 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                +     FIR  +   +R ++Y+PEL FR D S++    +N L+
Sbjct: 63  TTFDVIQNAKNFIRHELASKIR-IKYMPELSFRIDESIEYGIHINKLL 109


>gi|121587846|ref|ZP_01677603.1| ribosome-binding factor A [Vibrio cholerae 2740-80]
 gi|121728384|ref|ZP_01681412.1| ribosome-binding factor A [Vibrio cholerae V52]
 gi|147673152|ref|YP_001216138.1| ribosome-binding factor A [Vibrio cholerae O395]
 gi|153215853|ref|ZP_01950185.1| ribosome-binding factor A [Vibrio cholerae 1587]
 gi|153802002|ref|ZP_01956588.1| ribosome-binding factor A [Vibrio cholerae MZO-3]
 gi|153818692|ref|ZP_01971359.1| ribosome-binding factor A [Vibrio cholerae NCTC 8457]
 gi|153822541|ref|ZP_01975208.1| ribosome-binding factor A [Vibrio cholerae B33]
 gi|153826508|ref|ZP_01979175.1| ribosome-binding factor A [Vibrio cholerae MZO-2]
 gi|153829183|ref|ZP_01981850.1| ribosome-binding factor A [Vibrio cholerae 623-39]
 gi|227080825|ref|YP_002809376.1| ribosome-binding factor A [Vibrio cholerae M66-2]
 gi|229505734|ref|ZP_04395244.1| ribosome-binding factor A [Vibrio cholerae BX 330286]
 gi|229509233|ref|ZP_04398718.1| ribosome-binding factor A [Vibrio cholerae B33]
 gi|229512906|ref|ZP_04402373.1| ribosome-binding factor A [Vibrio cholerae TMA 21]
 gi|229530449|ref|ZP_04419837.1| ribosome-binding factor A [Vibrio cholerae 12129(1)]
 gi|229608845|ref|YP_002879493.1| ribosome-binding factor A [Vibrio cholerae MJ-1236]
 gi|254226549|ref|ZP_04920132.1| ribosome-binding factor A [Vibrio cholerae V51]
 gi|254291883|ref|ZP_04962665.1| ribosome-binding factor A [Vibrio cholerae AM-19226]
 gi|254850878|ref|ZP_05240228.1| ribosome-binding factor A [Vibrio cholerae MO10]
 gi|297580770|ref|ZP_06942696.1| ribosome-binding factor A [Vibrio cholerae RC385]
 gi|298500760|ref|ZP_07010563.1| ribosome-binding factor A [Vibrio cholerae MAK 757]
 gi|9655080|gb|AAF93810.1| ribosome-binding factor A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547882|gb|EAX57966.1| ribosome-binding factor A [Vibrio cholerae 2740-80]
 gi|121629318|gb|EAX61750.1| ribosome-binding factor A [Vibrio cholerae V52]
 gi|124114570|gb|EAY33390.1| ribosome-binding factor A [Vibrio cholerae 1587]
 gi|124122461|gb|EAY41204.1| ribosome-binding factor A [Vibrio cholerae MZO-3]
 gi|125620953|gb|EAZ49304.1| ribosome-binding factor A [Vibrio cholerae V51]
 gi|126510772|gb|EAZ73366.1| ribosome-binding factor A [Vibrio cholerae NCTC 8457]
 gi|126519959|gb|EAZ77182.1| ribosome-binding factor A [Vibrio cholerae B33]
 gi|146315035|gb|ABQ19574.1| ribosome-binding factor A [Vibrio cholerae O395]
 gi|148875372|gb|EDL73507.1| ribosome-binding factor A [Vibrio cholerae 623-39]
 gi|149739688|gb|EDM53895.1| ribosome-binding factor A [Vibrio cholerae MZO-2]
 gi|150422169|gb|EDN14134.1| ribosome-binding factor A [Vibrio cholerae AM-19226]
 gi|227008713|gb|ACP04925.1| ribosome-binding factor A [Vibrio cholerae M66-2]
 gi|227012469|gb|ACP08679.1| ribosome-binding factor A [Vibrio cholerae O395]
 gi|229332222|gb|EEN97710.1| ribosome-binding factor A [Vibrio cholerae 12129(1)]
 gi|229350155|gb|EEO15108.1| ribosome-binding factor A [Vibrio cholerae TMA 21]
 gi|229353805|gb|EEO18741.1| ribosome-binding factor A [Vibrio cholerae B33]
 gi|229357957|gb|EEO22874.1| ribosome-binding factor A [Vibrio cholerae BX 330286]
 gi|229371500|gb|ACQ61923.1| ribosome-binding factor A [Vibrio cholerae MJ-1236]
 gi|254846583|gb|EET24997.1| ribosome-binding factor A [Vibrio cholerae MO10]
 gi|297535186|gb|EFH74021.1| ribosome-binding factor A [Vibrio cholerae RC385]
 gi|297540541|gb|EFH76599.1| ribosome-binding factor A [Vibrio cholerae MAK 757]
          Length = 136

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M+N  PK   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V++
Sbjct: 1   MRNDMPKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFV 57

Query: 61  SLPL--DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +     + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+ 
Sbjct: 58  TFLCIGEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 116


>gi|258404626|ref|YP_003197368.1| ribosome-binding factor A [Desulfohalobium retbaense DSM 5692]
 gi|257796853|gb|ACV67790.1| ribosome-binding factor A [Desulfohalobium retbaense DSM 5692]
          Length = 120

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 5/103 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
            +RRA R+G+ +   +  +++      RL    +++IS V M+ +L+VA V  + P    
Sbjct: 5   TTRRAQRMGDTIMREIGHLLVEEAKDPRL---QLVTISGVRMNRNLQVAEVLFTHPEGRD 61

Query: 68  PDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
            ++ +I+AL     F+R  +G+ LR LR+VP+LRF +DT L+ 
Sbjct: 62  KEQEIITALESASGFLRTALGKRLR-LRFVPQLRFTWDTFLED 103


>gi|215488485|ref|YP_002330916.1| ribosome-binding factor A [Escherichia coli O127:H6 str. E2348/69]
 gi|312968494|ref|ZP_07782703.1| ribosome-binding factor A [Escherichia coli 2362-75]
 gi|254789748|sp|B7UJ62|RBFA_ECO27 RecName: Full=Ribosome-binding factor A
 gi|215266557|emb|CAS10996.1| 30s ribosome binding factor RbfA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286712|gb|EFR14623.1| ribosome-binding factor A [Escherichia coli 2362-75]
          Length = 133

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|15803709|ref|NP_289743.1| ribosome-binding factor A [Escherichia coli O157:H7 EDL933]
 gi|15833302|ref|NP_312075.1| ribosome-binding factor A [Escherichia coli O157:H7 str. Sakai]
 gi|16131059|ref|NP_417636.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
           MG1655]
 gi|30064507|ref|NP_838678.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
 gi|56480279|ref|NP_708968.2| ribosome-binding factor A [Shigella flexneri 2a str. 301]
 gi|74313704|ref|YP_312123.1| ribosome-binding factor A [Shigella sonnei Ss046]
 gi|82545593|ref|YP_409540.1| ribosome-binding factor A [Shigella boydii Sb227]
 gi|82778481|ref|YP_404830.1| ribosome-binding factor A [Shigella dysenteriae Sd197]
 gi|89109932|ref|AP_003712.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
           W3110]
 gi|110643408|ref|YP_671138.1| ribosome-binding factor A [Escherichia coli 536]
 gi|110807036|ref|YP_690556.1| ribosome-binding factor A [Shigella flexneri 5 str. 8401]
 gi|117625463|ref|YP_858786.1| ribosome-binding factor A [Escherichia coli APEC O1]
 gi|157154949|ref|YP_001464643.1| ribosome-binding factor A [Escherichia coli E24377A]
 gi|157162652|ref|YP_001459970.1| ribosome-binding factor A [Escherichia coli HS]
 gi|161486110|ref|NP_755790.2| ribosome-binding factor A [Escherichia coli CFT073]
 gi|162138367|ref|YP_542574.2| ribosome-binding factor A [Escherichia coli UTI89]
 gi|168749237|ref|ZP_02774259.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4113]
 gi|168754148|ref|ZP_02779155.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4401]
 gi|168762133|ref|ZP_02787140.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4501]
 gi|168769585|ref|ZP_02794592.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4486]
 gi|168773166|ref|ZP_02798173.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4196]
 gi|168781310|ref|ZP_02806317.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4076]
 gi|168786052|ref|ZP_02811059.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC869]
 gi|168797768|ref|ZP_02822775.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC508]
 gi|170018581|ref|YP_001723535.1| ribosome-binding factor A [Escherichia coli ATCC 8739]
 gi|170082704|ref|YP_001732024.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170680547|ref|YP_001745441.1| ribosome-binding factor A [Escherichia coli SMS-3-5]
 gi|187731087|ref|YP_001881916.1| ribosome-binding factor A [Shigella boydii CDC 3083-94]
 gi|188492975|ref|ZP_03000245.1| ribosome-binding factor A [Escherichia coli 53638]
 gi|191168041|ref|ZP_03029841.1| ribosome-binding factor A [Escherichia coli B7A]
 gi|191172235|ref|ZP_03033778.1| ribosome-binding factor A [Escherichia coli F11]
 gi|193062103|ref|ZP_03043199.1| ribosome-binding factor A [Escherichia coli E22]
 gi|193067230|ref|ZP_03048198.1| ribosome-binding factor A [Escherichia coli E110019]
 gi|194427732|ref|ZP_03060279.1| ribosome-binding factor A [Escherichia coli B171]
 gi|194433785|ref|ZP_03066060.1| ribosome-binding factor A [Shigella dysenteriae 1012]
 gi|194438794|ref|ZP_03070880.1| ribosome-binding factor A [Escherichia coli 101-1]
 gi|195938387|ref|ZP_03083769.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4024]
 gi|208807175|ref|ZP_03249512.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4206]
 gi|208814431|ref|ZP_03255760.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4045]
 gi|208819440|ref|ZP_03259760.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4042]
 gi|209397218|ref|YP_002272638.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4115]
 gi|209920644|ref|YP_002294728.1| ribosome-binding factor A [Escherichia coli SE11]
 gi|217327738|ref|ZP_03443821.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14588]
 gi|218550452|ref|YP_002384243.1| ribosome-binding factor A [Escherichia fergusonii ATCC 35469]
 gi|218555739|ref|YP_002388652.1| ribosome-binding factor A [Escherichia coli IAI1]
 gi|218560239|ref|YP_002393152.1| ribosome-binding factor A [Escherichia coli S88]
 gi|218691459|ref|YP_002399671.1| ribosome-binding factor A [Escherichia coli ED1a]
 gi|218696874|ref|YP_002404541.1| ribosome-binding factor A [Escherichia coli 55989]
 gi|218701938|ref|YP_002409567.1| ribosome-binding factor A [Escherichia coli IAI39]
 gi|218706789|ref|YP_002414308.1| ribosome-binding factor A [Escherichia coli UMN026]
 gi|227887890|ref|ZP_04005695.1| ribosome binding factor A [Escherichia coli 83972]
 gi|238902271|ref|YP_002928067.1| 30s ribosome binding factor [Escherichia coli BW2952]
 gi|253771997|ref|YP_003034828.1| ribosome-binding factor A [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163111|ref|YP_003046219.1| ribosome-binding factor A [Escherichia coli B str. REL606]
 gi|254795118|ref|YP_003079955.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14359]
 gi|256018913|ref|ZP_05432778.1| ribosome-binding factor A [Shigella sp. D9]
 gi|256024257|ref|ZP_05438122.1| ribosome-binding factor A [Escherichia sp. 4_1_40B]
 gi|260845982|ref|YP_003223760.1| 30S ribosome binding factor RbfA [Escherichia coli O103:H2 str.
           12009]
 gi|260857296|ref|YP_003231187.1| 30S ribosome binding factor RbfA [Escherichia coli O26:H11 str.
           11368]
 gi|260869919|ref|YP_003236321.1| 30S ribosome binding factor RbfA [Escherichia coli O111:H- str.
           11128]
 gi|261228179|ref|ZP_05942460.1| 30s ribosome binding factor [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255035|ref|ZP_05947568.1| 30S ribosome binding factor RbfA [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284543|ref|YP_003501361.1| Ribosome-binding factor A [Escherichia coli O55:H7 str. CB9615]
 gi|293406779|ref|ZP_06650705.1| ribosome-binding factor A [Escherichia coli FVEC1412]
 gi|293449503|ref|ZP_06663924.1| ribosome-binding factor A [Escherichia coli B088]
 gi|298382519|ref|ZP_06992116.1| ribosome-binding factor A [Escherichia coli FVEC1302]
 gi|300817581|ref|ZP_07097797.1| ribosome-binding factor A [Escherichia coli MS 107-1]
 gi|300823870|ref|ZP_07103994.1| ribosome-binding factor A [Escherichia coli MS 119-7]
 gi|300904353|ref|ZP_07122206.1| ribosome-binding factor A [Escherichia coli MS 84-1]
 gi|300918922|ref|ZP_07135481.1| ribosome-binding factor A [Escherichia coli MS 115-1]
 gi|300926094|ref|ZP_07141912.1| ribosome-binding factor A [Escherichia coli MS 182-1]
 gi|300929857|ref|ZP_07145303.1| ribosome-binding factor A [Escherichia coli MS 187-1]
 gi|300938077|ref|ZP_07152855.1| ribosome-binding factor A [Escherichia coli MS 21-1]
 gi|300948817|ref|ZP_07162885.1| ribosome-binding factor A [Escherichia coli MS 116-1]
 gi|300955753|ref|ZP_07168098.1| ribosome-binding factor A [Escherichia coli MS 175-1]
 gi|300977834|ref|ZP_07174074.1| ribosome-binding factor A [Escherichia coli MS 200-1]
 gi|300990767|ref|ZP_07179339.1| ribosome-binding factor A [Escherichia coli MS 45-1]
 gi|301025988|ref|ZP_07189470.1| ribosome-binding factor A [Escherichia coli MS 196-1]
 gi|301047990|ref|ZP_07195032.1| ribosome-binding factor A [Escherichia coli MS 185-1]
 gi|301301777|ref|ZP_07207911.1| ribosome-binding factor A [Escherichia coli MS 124-1]
 gi|301326410|ref|ZP_07219764.1| ribosome-binding factor A [Escherichia coli MS 78-1]
 gi|301644878|ref|ZP_07244850.1| ribosome-binding factor A [Escherichia coli MS 146-1]
 gi|306816489|ref|ZP_07450621.1| ribosome-binding factor A [Escherichia coli NC101]
 gi|307139854|ref|ZP_07499210.1| ribosome-binding factor A [Escherichia coli H736]
 gi|307313126|ref|ZP_07592752.1| ribosome-binding factor A [Escherichia coli W]
 gi|309785494|ref|ZP_07680125.1| ribosome-binding factor A [Shigella dysenteriae 1617]
 gi|309793745|ref|ZP_07688171.1| ribosome-binding factor A [Escherichia coli MS 145-7]
 gi|312972561|ref|ZP_07786734.1| ribosome-binding factor A [Escherichia coli 1827-70]
 gi|331643867|ref|ZP_08344998.1| ribosome-binding factor A [Escherichia coli H736]
 gi|331654773|ref|ZP_08355773.1| ribosome-binding factor A [Escherichia coli M718]
 gi|331659456|ref|ZP_08360398.1| ribosome-binding factor A [Escherichia coli TA206]
 gi|331664781|ref|ZP_08365686.1| ribosome-binding factor A [Escherichia coli TA143]
 gi|331669996|ref|ZP_08370841.1| ribosome-binding factor A [Escherichia coli TA271]
 gi|331674705|ref|ZP_08375464.1| ribosome-binding factor A [Escherichia coli TA280]
 gi|331679248|ref|ZP_08379920.1| ribosome-binding factor A [Escherichia coli H591]
 gi|331684816|ref|ZP_08385408.1| ribosome-binding factor A [Escherichia coli H299]
 gi|67471971|sp|P0A7G2|RBFA_ECOLI RecName: Full=Ribosome-binding factor A; AltName: Full=Protein P15B
 gi|67471972|sp|P0A7G3|RBFA_ECOL6 RecName: Full=Ribosome-binding factor A
 gi|67471973|sp|P0A7G4|RBFA_ECO57 RecName: Full=Ribosome-binding factor A
 gi|67471974|sp|P0A7G5|RBFA_SHIFL RecName: Full=Ribosome-binding factor A
 gi|123147649|sp|Q0TCU2|RBFA_ECOL5 RecName: Full=Ribosome-binding factor A
 gi|123342479|sp|Q0T0B4|RBFA_SHIF8 RecName: Full=Ribosome-binding factor A
 gi|123558564|sp|Q31W46|RBFA_SHIBS RecName: Full=Ribosome-binding factor A
 gi|123561526|sp|Q32BG6|RBFA_SHIDS RecName: Full=Ribosome-binding factor A
 gi|123616074|sp|Q3YX74|RBFA_SHISS RecName: Full=Ribosome-binding factor A
 gi|166218437|sp|A1AG72|RBFA_ECOK1 RecName: Full=Ribosome-binding factor A
 gi|166918674|sp|A7ZS64|RBFA_ECO24 RecName: Full=Ribosome-binding factor A
 gi|166918675|sp|A8A4Y3|RBFA_ECOHS RecName: Full=Ribosome-binding factor A
 gi|172046242|sp|Q1R6H1|RBFA_ECOUT RecName: Full=Ribosome-binding factor A
 gi|189039540|sp|B1IQV4|RBFA_ECOLC RecName: Full=Ribosome-binding factor A
 gi|226723599|sp|B1XGX9|RBFA_ECODH RecName: Full=Ribosome-binding factor A
 gi|226723600|sp|B6I1P2|RBFA_ECOSE RecName: Full=Ribosome-binding factor A
 gi|226736644|sp|B7MB88|RBFA_ECO45 RecName: Full=Ribosome-binding factor A
 gi|226736645|sp|B7NKN6|RBFA_ECO7I RecName: Full=Ribosome-binding factor A
 gi|226736646|sp|B7M075|RBFA_ECO8A RecName: Full=Ribosome-binding factor A
 gi|226736647|sp|B7NDF3|RBFA_ECOLU RecName: Full=Ribosome-binding factor A
 gi|226736648|sp|B1LFR9|RBFA_ECOSM RecName: Full=Ribosome-binding factor A
 gi|226736649|sp|B7LR36|RBFA_ESCF3 RecName: Full=Ribosome-binding factor A
 gi|238058487|sp|B5YS57|RBFA_ECO5E RecName: Full=Ribosome-binding factor A
 gi|238691777|sp|B2U208|RBFA_SHIB3 RecName: Full=Ribosome-binding factor A
 gi|254789749|sp|B7LHN2|RBFA_ECO55 RecName: Full=Ribosome-binding factor A
 gi|254789750|sp|B7N0V2|RBFA_ECO81 RecName: Full=Ribosome-binding factor A
 gi|259551972|sp|C4ZSQ8|RBFA_ECOBW RecName: Full=Ribosome-binding factor A
 gi|12517778|gb|AAG58303.1|AE005545_5 ribosome-binding factor A [Escherichia coli O157:H7 str. EDL933]
 gi|42218|emb|CAA32020.1| P15B gene product (AA 1 - 133) [Escherichia coli]
 gi|42222|emb|CAA31634.1| unnamed protein product [Escherichia coli]
 gi|606107|gb|AAA57970.1| P15B [Escherichia coli str. K-12 substr. MG1655]
 gi|1789558|gb|AAC76201.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13363521|dbj|BAB37471.1| ribosome-binding factor A [Escherichia coli O157:H7 str. Sakai]
 gi|30042766|gb|AAP18489.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
 gi|56383830|gb|AAN44675.2| ribosome-binding factor A [Shigella flexneri 2a str. 301]
 gi|73857181|gb|AAZ89888.1| ribosome-binding factor A [Shigella sonnei Ss046]
 gi|81242629|gb|ABB63339.1| ribosome-binding factor A [Shigella dysenteriae Sd197]
 gi|81247004|gb|ABB67712.1| ribosome-binding factor A [Shigella boydii Sb227]
 gi|85675963|dbj|BAE77213.1| 30s ribosome binding factor [Escherichia coli str. K12 substr.
           W3110]
 gi|110345000|gb|ABG71237.1| ribosome-binding factor A [Escherichia coli 536]
 gi|110616584|gb|ABF05251.1| ribosome-binding factor A [Shigella flexneri 5 str. 8401]
 gi|115514587|gb|ABJ02662.1| ribosome-binding factor A [Escherichia coli APEC O1]
 gi|157068332|gb|ABV07587.1| ribosome-binding factor A [Escherichia coli HS]
 gi|157076979|gb|ABV16687.1| ribosome-binding factor A [Escherichia coli E24377A]
 gi|169753509|gb|ACA76208.1| ribosome-binding factor A [Escherichia coli ATCC 8739]
 gi|169890539|gb|ACB04246.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170518265|gb|ACB16443.1| ribosome-binding factor A [Escherichia coli SMS-3-5]
 gi|187428079|gb|ACD07353.1| ribosome-binding factor A [Shigella boydii CDC 3083-94]
 gi|187770833|gb|EDU34677.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4196]
 gi|188016404|gb|EDU54526.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4113]
 gi|188488174|gb|EDU63277.1| ribosome-binding factor A [Escherichia coli 53638]
 gi|189001131|gb|EDU70117.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4076]
 gi|189358437|gb|EDU76856.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4401]
 gi|189361487|gb|EDU79906.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4486]
 gi|189367587|gb|EDU86003.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4501]
 gi|189373921|gb|EDU92337.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC869]
 gi|189379719|gb|EDU98135.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC508]
 gi|190901910|gb|EDV61659.1| ribosome-binding factor A [Escherichia coli B7A]
 gi|190907545|gb|EDV67141.1| ribosome-binding factor A [Escherichia coli F11]
 gi|192932323|gb|EDV84921.1| ribosome-binding factor A [Escherichia coli E22]
 gi|192959187|gb|EDV89622.1| ribosome-binding factor A [Escherichia coli E110019]
 gi|194414240|gb|EDX30515.1| ribosome-binding factor A [Escherichia coli B171]
 gi|194418048|gb|EDX34142.1| ribosome-binding factor A [Shigella dysenteriae 1012]
 gi|194422266|gb|EDX38267.1| ribosome-binding factor A [Escherichia coli 101-1]
 gi|208726976|gb|EDZ76577.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4206]
 gi|208735708|gb|EDZ84395.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4045]
 gi|208739563|gb|EDZ87245.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4042]
 gi|209158618|gb|ACI36051.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4115]
 gi|209758348|gb|ACI77486.1| ribosome-binding factor A [Escherichia coli]
 gi|209758350|gb|ACI77487.1| ribosome-binding factor A [Escherichia coli]
 gi|209758352|gb|ACI77488.1| ribosome-binding factor A [Escherichia coli]
 gi|209758354|gb|ACI77489.1| ribosome-binding factor A [Escherichia coli]
 gi|209758356|gb|ACI77490.1| ribosome-binding factor A [Escherichia coli]
 gi|209913903|dbj|BAG78977.1| ribosome-binding factor A [Escherichia coli SE11]
 gi|217320105|gb|EEC28530.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14588]
 gi|218353606|emb|CAU99796.1| 30s ribosome binding factor [Escherichia coli 55989]
 gi|218357993|emb|CAQ90639.1| 30s ribosome binding factor [Escherichia fergusonii ATCC 35469]
 gi|218362507|emb|CAR00131.1| 30s ribosome binding factor [Escherichia coli IAI1]
 gi|218367008|emb|CAR04779.1| 30s ribosome binding factor [Escherichia coli S88]
 gi|218371924|emb|CAR19780.1| 30s ribosome binding factor [Escherichia coli IAI39]
 gi|218429023|emb|CAR09970.2| 30s ribosome binding factor [Escherichia coli ED1a]
 gi|218433886|emb|CAR14803.1| 30s ribosome binding factor [Escherichia coli UMN026]
 gi|222034886|emb|CAP77629.1| ribosome-binding factor A [Escherichia coli LF82]
 gi|227835286|gb|EEJ45752.1| ribosome binding factor A [Escherichia coli 83972]
 gi|238859805|gb|ACR61803.1| 30s ribosome binding factor [Escherichia coli BW2952]
 gi|242378712|emb|CAQ33502.1| 30S ribosome binding factor [Escherichia coli BL21(DE3)]
 gi|253323041|gb|ACT27643.1| ribosome-binding factor A [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975012|gb|ACT40683.1| ribosome-binding factor A [Escherichia coli B str. REL606]
 gi|253979168|gb|ACT44838.1| ribosome-binding factor A [Escherichia coli BL21(DE3)]
 gi|254594518|gb|ACT73879.1| 30s ribosome binding factor [Escherichia coli O157:H7 str. TW14359]
 gi|257755945|dbj|BAI27447.1| 30S ribosome binding factor RbfA [Escherichia coli O26:H11 str.
           11368]
 gi|257761129|dbj|BAI32626.1| 30S ribosome binding factor RbfA [Escherichia coli O103:H2 str.
           12009]
 gi|257766275|dbj|BAI37770.1| 30S ribosome binding factor RbfA [Escherichia coli O111:H- str.
           11128]
 gi|260447804|gb|ACX38226.1| ribosome-binding factor A [Escherichia coli DH1]
 gi|281180211|dbj|BAI56541.1| ribosome-binding factor A [Escherichia coli SE15]
 gi|281602551|gb|ADA75535.1| Ribosome-binding factor A [Shigella flexneri 2002017]
 gi|290764416|gb|ADD58377.1| Ribosome-binding factor A [Escherichia coli O55:H7 str. CB9615]
 gi|291322593|gb|EFE62022.1| ribosome-binding factor A [Escherichia coli B088]
 gi|291426785|gb|EFE99817.1| ribosome-binding factor A [Escherichia coli FVEC1412]
 gi|294493732|gb|ADE92488.1| ribosome-binding factor A [Escherichia coli IHE3034]
 gi|298277659|gb|EFI19175.1| ribosome-binding factor A [Escherichia coli FVEC1302]
 gi|299879883|gb|EFI88094.1| ribosome-binding factor A [Escherichia coli MS 196-1]
 gi|300300133|gb|EFJ56518.1| ribosome-binding factor A [Escherichia coli MS 185-1]
 gi|300308211|gb|EFJ62731.1| ribosome-binding factor A [Escherichia coli MS 200-1]
 gi|300317386|gb|EFJ67170.1| ribosome-binding factor A [Escherichia coli MS 175-1]
 gi|300403704|gb|EFJ87242.1| ribosome-binding factor A [Escherichia coli MS 84-1]
 gi|300407075|gb|EFJ90613.1| ribosome-binding factor A [Escherichia coli MS 45-1]
 gi|300413948|gb|EFJ97258.1| ribosome-binding factor A [Escherichia coli MS 115-1]
 gi|300417859|gb|EFK01170.1| ribosome-binding factor A [Escherichia coli MS 182-1]
 gi|300451706|gb|EFK15326.1| ribosome-binding factor A [Escherichia coli MS 116-1]
 gi|300456937|gb|EFK20430.1| ribosome-binding factor A [Escherichia coli MS 21-1]
 gi|300462219|gb|EFK25712.1| ribosome-binding factor A [Escherichia coli MS 187-1]
 gi|300523638|gb|EFK44707.1| ribosome-binding factor A [Escherichia coli MS 119-7]
 gi|300529879|gb|EFK50941.1| ribosome-binding factor A [Escherichia coli MS 107-1]
 gi|300842758|gb|EFK70518.1| ribosome-binding factor A [Escherichia coli MS 124-1]
 gi|300846899|gb|EFK74659.1| ribosome-binding factor A [Escherichia coli MS 78-1]
 gi|301076823|gb|EFK91629.1| ribosome-binding factor A [Escherichia coli MS 146-1]
 gi|305850054|gb|EFM50513.1| ribosome-binding factor A [Escherichia coli NC101]
 gi|306907037|gb|EFN37545.1| ribosome-binding factor A [Escherichia coli W]
 gi|307555263|gb|ADN48038.1| ribosome-binding factor A [Escherichia coli ABU 83972]
 gi|307625232|gb|ADN69536.1| ribosome-binding factor A [Escherichia coli UM146]
 gi|308122702|gb|EFO59964.1| ribosome-binding factor A [Escherichia coli MS 145-7]
 gi|308926614|gb|EFP72090.1| ribosome-binding factor A [Shigella dysenteriae 1617]
 gi|309703595|emb|CBJ02935.1| ribosome-binding factor A [Escherichia coli ETEC H10407]
 gi|310332503|gb|EFP99716.1| ribosome-binding factor A [Escherichia coli 1827-70]
 gi|312947726|gb|ADR28553.1| ribosome-binding factor A [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648591|gb|EFS13033.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
 gi|315062475|gb|ADT76802.1| 30S ribosome binding factor [Escherichia coli W]
 gi|315137755|dbj|BAJ44914.1| ribosome-binding factor A [Escherichia coli DH1]
 gi|315257093|gb|EFU37061.1| ribosome-binding factor A [Escherichia coli MS 85-1]
 gi|315288931|gb|EFU48329.1| ribosome-binding factor A [Escherichia coli MS 110-3]
 gi|315294912|gb|EFU54251.1| ribosome-binding factor A [Escherichia coli MS 153-1]
 gi|315297881|gb|EFU57151.1| ribosome-binding factor A [Escherichia coli MS 16-3]
 gi|315617250|gb|EFU97859.1| ribosome-binding factor A [Escherichia coli 3431]
 gi|320175531|gb|EFW50627.1| Ribosome-binding factor A [Shigella dysenteriae CDC 74-1112]
 gi|320181443|gb|EFW56361.1| Ribosome-binding factor A [Shigella boydii ATCC 9905]
 gi|320186656|gb|EFW61380.1| Ribosome-binding factor A [Shigella flexneri CDC 796-83]
 gi|320189521|gb|EFW64180.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. EC1212]
 gi|320194653|gb|EFW69283.1| Ribosome-binding factor A [Escherichia coli WV_060327]
 gi|320202081|gb|EFW76656.1| Ribosome-binding factor A [Escherichia coli EC4100B]
 gi|320640239|gb|EFX09811.1| ribosome-binding factor A [Escherichia coli O157:H7 str. G5101]
 gi|320645536|gb|EFX14545.1| ribosome-binding factor A [Escherichia coli O157:H- str. 493-89]
 gi|320650846|gb|EFX19303.1| ribosome-binding factor A [Escherichia coli O157:H- str. H 2687]
 gi|320656227|gb|EFX24139.1| ribosome-binding factor A [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661917|gb|EFX29325.1| ribosome-binding factor A [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666752|gb|EFX33731.1| ribosome-binding factor A [Escherichia coli O157:H7 str. LSU-61]
 gi|323154381|gb|EFZ40582.1| ribosome-binding factor A [Escherichia coli EPECa14]
 gi|323162861|gb|EFZ48696.1| ribosome-binding factor A [Escherichia coli E128010]
 gi|323165125|gb|EFZ50915.1| ribosome-binding factor A [Shigella sonnei 53G]
 gi|323173573|gb|EFZ59202.1| ribosome-binding factor A [Escherichia coli LT-68]
 gi|323178880|gb|EFZ64456.1| ribosome-binding factor A [Escherichia coli 1180]
 gi|323183122|gb|EFZ68520.1| ribosome-binding factor A [Escherichia coli 1357]
 gi|323189210|gb|EFZ74494.1| ribosome-binding factor A [Escherichia coli RN587/1]
 gi|323376937|gb|ADX49205.1| ribosome-binding factor A [Escherichia coli KO11]
 gi|323936137|gb|EGB32431.1| ribosome-binding protein A [Escherichia coli E1520]
 gi|323941731|gb|EGB37910.1| ribosome-binding proteinA [Escherichia coli E482]
 gi|323946977|gb|EGB42993.1| ribosome-binding protein A [Escherichia coli H120]
 gi|323951313|gb|EGB47188.1| ribosome-binding proteinA [Escherichia coli H252]
 gi|323957684|gb|EGB53398.1| ribosome-binding proteinA [Escherichia coli H263]
 gi|323961061|gb|EGB56676.1| ribosome-binding proteinA [Escherichia coli H489]
 gi|323966349|gb|EGB61783.1| ribosome-binding proteinA [Escherichia coli M863]
 gi|323970268|gb|EGB65539.1| ribosome-binding proteinA [Escherichia coli TA007]
 gi|323979114|gb|EGB74192.1| ribosome-binding proteinA [Escherichia coli TW10509]
 gi|324008766|gb|EGB77985.1| ribosome-binding factor A [Escherichia coli MS 57-2]
 gi|324012107|gb|EGB81326.1| ribosome-binding factor A [Escherichia coli MS 60-1]
 gi|324018309|gb|EGB87528.1| ribosome-binding factor A [Escherichia coli MS 117-3]
 gi|324115227|gb|EGC09191.1| ribosome-binding proteinA [Escherichia fergusonii B253]
 gi|325498750|gb|EGC96609.1| ribosome-binding factor A [Escherichia fergusonii ECD227]
 gi|326337869|gb|EGD61703.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. 1125]
 gi|326347438|gb|EGD71163.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. 1044]
 gi|327251948|gb|EGE63634.1| ribosome-binding factor A [Escherichia coli STEC_7v]
 gi|331037338|gb|EGI09562.1| ribosome-binding factor A [Escherichia coli H736]
 gi|331048155|gb|EGI20232.1| ribosome-binding factor A [Escherichia coli M718]
 gi|331054038|gb|EGI26067.1| ribosome-binding factor A [Escherichia coli TA206]
 gi|331058029|gb|EGI30011.1| ribosome-binding factor A [Escherichia coli TA143]
 gi|331062909|gb|EGI34823.1| ribosome-binding factor A [Escherichia coli TA271]
 gi|331068144|gb|EGI39540.1| ribosome-binding factor A [Escherichia coli TA280]
 gi|331073313|gb|EGI44636.1| ribosome-binding factor A [Escherichia coli H591]
 gi|331078431|gb|EGI49637.1| ribosome-binding factor A [Escherichia coli H299]
 gi|332086101|gb|EGI91263.1| ribosome-binding factor A [Shigella boydii 5216-82]
 gi|332086394|gb|EGI91541.1| ribosome-binding factor A [Shigella dysenteriae 155-74]
 gi|332090730|gb|EGI95824.1| ribosome-binding factor A [Shigella boydii 3594-74]
 gi|332345124|gb|AEE58458.1| ribosome-binding factor RbfA [Escherichia coli UMNK88]
 gi|332752327|gb|EGJ82717.1| ribosome-binding factor A [Shigella flexneri 4343-70]
 gi|332752854|gb|EGJ83239.1| ribosome-binding factor A [Shigella flexneri K-671]
 gi|332754590|gb|EGJ84956.1| ribosome-binding factor A [Shigella flexneri 2747-71]
 gi|332765164|gb|EGJ95391.1| ribosome-binding factor A [Shigella flexneri 2930-71]
 gi|332998809|gb|EGK18405.1| ribosome-binding factor A [Shigella flexneri VA-6]
 gi|333000039|gb|EGK19622.1| ribosome-binding factor A [Shigella flexneri K-218]
 gi|333014561|gb|EGK33908.1| ribosome-binding factor A [Shigella flexneri K-304]
          Length = 133

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|170754753|ref|YP_001781960.1| ribosome-binding factor A [Clostridium botulinum B1 str. Okra]
 gi|229564414|sp|B1II48|RBFA_CLOBK RecName: Full=Ribosome-binding factor A
 gi|169119965|gb|ACA43801.1| ribosome-binding factor A [Clostridium botulinum B1 str. Okra]
          Length = 120

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           RA R+ EEV+  +  +I N+    RL +  ++S+++V ++ DL+ A VY+S+   + + +
Sbjct: 5   RAGRINEEVKKEVSNIIHNDIKDPRLSA--MVSVTDVDVTKDLKYAKVYVSIFGNEKAKE 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL  ++ FIR  IGR ++ LR  PE+    D S++    ++ L+
Sbjct: 63  ESLQALKSSVGFIRKEIGRRVK-LRNTPEVIIEVDNSIERGMHIDELL 109


>gi|169824463|ref|YP_001692074.1| ribosome-binding factor A [Finegoldia magna ATCC 29328]
 gi|302380621|ref|ZP_07269086.1| ribosome-binding factor A [Finegoldia magna ACS-171-V-Col3]
 gi|303233702|ref|ZP_07320356.1| ribosome-binding factor A [Finegoldia magna BVS033A4]
 gi|259551994|sp|B0S1E4|RBFA_FINM2 RecName: Full=Ribosome-binding factor A
 gi|167831268|dbj|BAG08184.1| ribosome-binding factor A [Finegoldia magna ATCC 29328]
 gi|302311564|gb|EFK93580.1| ribosome-binding factor A [Finegoldia magna ACS-171-V-Col3]
 gi|302495136|gb|EFL54888.1| ribosome-binding factor A [Finegoldia magna BVS033A4]
          Length = 121

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 4/106 (3%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           N +R  R+  E++  +   I+N+  +D  I +  +S++EV ++ DL  ATVYI+ +  D 
Sbjct: 2   NIKRVRRISSEIKKVISSSIINS-LKDPRIDKLNVSVTEVKVTNDLSFATVYIAVIGDDE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD-TSLQSYW 111
              + +  LN    F++ +IG ++ +LR+VP+L F+ D TS QS  
Sbjct: 61  KKKQTLEGLNKAKGFLKKQIGENV-DLRHVPQLIFKIDETSEQSMH 105


>gi|150390434|ref|YP_001320483.1| ribosome-binding factor A [Alkaliphilus metalliredigens QYMF]
 gi|172052480|sp|A6TRK6|RBFA_ALKMQ RecName: Full=Ribosome-binding factor A
 gi|149950296|gb|ABR48824.1| ribosome-binding factor A [Alkaliphilus metalliredigens QYMF]
          Length = 138

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 4/99 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           R  R+ EE++  +  +I  N+ +D  I++ + SI EV ++ DLR AT+YIS+  D    +
Sbjct: 8   RVNRLAEEIKKIISHMI-RNDLRDPRIAK-MTSIIEVNVTRDLRFATIYISVLGDQQEKE 65

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             I  L  +  FIR  +GR +   R+ PEL F+ D S++
Sbjct: 66  ETIEGLKKSSGFIRKEVGRQI-TARFTPELIFKLDESIE 103


>gi|52425497|ref|YP_088634.1| ribosome-binding factor A [Mannheimia succiniciproducens MBEL55E]
 gi|61214861|sp|Q65SL1|RBFA_MANSM RecName: Full=Ribosome-binding factor A
 gi|52307549|gb|AAU38049.1| RbfA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 131

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DV 66
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++      D 
Sbjct: 6   KRSDRVAQELQKEI-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFNNDDE 62

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +  + + AL     +IR  +G+++R LR VPELRF YD SL    +++ L+ 
Sbjct: 63  AIKQGMKALEKAAPYIRSLVGKAMR-LRIVPELRFEYDRSLVEGMRMSNLVT 113


>gi|260914252|ref|ZP_05920725.1| ribosome-binding factor A [Pasteurella dagmatis ATCC 43325]
 gi|260631885|gb|EEX50063.1| ribosome-binding factor A [Pasteurella dagmatis ATCC 43325]
          Length = 140

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 16/126 (12%)

Query: 1   MKNKN-PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY 59
           MK K   +  +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A V+
Sbjct: 1   MKEKQMAREFKRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLAYAKVF 57

Query: 60  ISLPLDVSPDRVISALNCNIK-------FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
           ++   D       SA+   +K       +IR  +G+++R LR VPE+RF YD SL    +
Sbjct: 58  VTFLFDNDE----SAIEAGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDRSLIEGMR 112

Query: 113 LNALMC 118
           ++ L+ 
Sbjct: 113 MSNLVT 118


>gi|168187907|ref|ZP_02622542.1| ribosome-binding factor A [Clostridium botulinum C str. Eklund]
 gi|169294249|gb|EDS76382.1| ribosome-binding factor A [Clostridium botulinum C str. Eklund]
          Length = 121

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R  R+ EEV+  +  +I ++    RL    ++S++ V ++ DLR A V+IS+   D S  
Sbjct: 5   RLGRINEEVKKEISNIIRDDIHDPRLTG--MVSVTRVEVTNDLRYAKVFISIFGSDESKA 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + AL  +  FIR  +G  ++ LRY PE+    D S++    +N L+ 
Sbjct: 63  ETLEALKSSAGFIRREVGHRVK-LRYTPEIILELDESIEHGMHINDLLS 110


>gi|254447065|ref|ZP_05060532.1| ribosome-binding factor A [gamma proteobacterium HTCC5015]
 gi|198263204|gb|EDY87482.1| ribosome-binding factor A [gamma proteobacterium HTCC5015]
          Length = 142

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R+ RV ++++  L  +I   E +D  +S D +++ EV ++ DL  A +YI+  LD 
Sbjct: 16  KDYPRSYRVADQIQKDLANLI-RTEVKDPRLS-DFVTLEEVRVTRDLSQAKIYIT-TLDD 72

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +   + LN    F+RG +G+ LR LR +P+L F YD + +   +++ L+
Sbjct: 73  KAEDSAAVLNRASGFLRGVLGKRLR-LRVIPQLHFIYDATQEEAQRIDGLI 122


>gi|83589899|ref|YP_429908.1| ribosome-binding factor A [Moorella thermoacetica ATCC 39073]
 gi|123524645|sp|Q2RJM4|RBFA_MOOTA RecName: Full=Ribosome-binding factor A
 gi|83572813|gb|ABC19365.1| ribosome-binding factor A [Moorella thermoacetica ATCC 39073]
          Length = 122

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 3/109 (2%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           R  RV EE++  +  +I  +E +D  +   ++S++ V +S D   A VY+S+  D    +
Sbjct: 6   RNQRVAEEMKKEIARII-RDEVKDPRLEAGLVSVTGVELSNDRHYAKVYVSIYGDEEARN 64

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + +  L     FIR  IG+ L +LRY PE+ F+ D S++    +N L+ 
Sbjct: 65  QAMEGLARATSFIRREIGQRL-SLRYTPEITFKLDVSIEHGDHINRLLA 112


>gi|257066117|ref|YP_003152373.1| ribosome-binding factor A [Anaerococcus prevotii DSM 20548]
 gi|256797997|gb|ACV28652.1| ribosome-binding factor A [Anaerococcus prevotii DSM 20548]
          Length = 128

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 2/112 (1%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           N RR  R+  EV+  L  ++ ++    RL +  +++I++V ++ DL  A  Y+S+  D +
Sbjct: 2   NKRRTERISSEVKKELSKILRDDLNDPRLSTEAMVTITDVEVTNDLSYADCYVSVLGDAT 61

Query: 68  -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + V+ AL     +I+  IG  +R LR +PE RF+ D S++    ++ L+ 
Sbjct: 62  NKEDVLEALEQAKGYIKILIGERMR-LRSMPEFRFKIDNSIEHGAYMDKLIA 112


>gi|325578300|ref|ZP_08148435.1| ribosome-binding factor A [Haemophilus parainfluenzae ATCC 33392]
 gi|325160036|gb|EGC72165.1| ribosome-binding factor A [Haemophilus parainfluenzae ATCC 33392]
          Length = 128

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
           +R+ RV +E++  +  +IL  E +D  I   ++++S+V +S DL  A V+++   D   V
Sbjct: 6   KRSDRVAQELQKEI-AIILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFDHDEV 62

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +  + +  L     +IR  +G+++R LR VPE+RF YD SL    +++ L+ 
Sbjct: 63  AIAQGMKGLEKAAPYIRSLVGKAMR-LRIVPEIRFFYDQSLVEGMRMSNLVT 113


>gi|229525297|ref|ZP_04414702.1| ribosome-binding factor A [Vibrio cholerae bv. albensis VL426]
 gi|229338878|gb|EEO03895.1| ribosome-binding factor A [Vibrio cholerae bv. albensis VL426]
          Length = 136

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M+N  PK   R+ RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V++
Sbjct: 1   MRNDMPKEFSRSQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFV 57

Query: 61  SLPL--DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +     + +P+  + AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+ 
Sbjct: 58  TFLCIGEQTPESCLEALREHEVQIRMMLGKQIR-LRLTPEVRFYYDNTLVEGMRMSNLVT 116


>gi|78222797|ref|YP_384544.1| ribosome-binding factor A [Geobacter metallireducens GS-15]
 gi|123571972|sp|Q39VA5|RBFA_GEOMG RecName: Full=Ribosome-binding factor A
 gi|78194052|gb|ABB31819.1| ribosome-binding factor A [Geobacter metallireducens GS-15]
          Length = 118

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 42  ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           ++I+ V +S D+R AT+Y + +  D +    +  LN ++ FIR  + + LR LR+ PEL 
Sbjct: 32  VTITGVKVSDDIRHATIYYTVMGSDEAKKSTLHGLNSSVGFIRKEVSKELR-LRFAPELI 90

Query: 101 FRYDTSLQSYWKLNALM 117
           F+YD S++   +++ L+
Sbjct: 91  FKYDESIEYGNRIDQLL 107


>gi|257468344|ref|ZP_05632438.1| ribosome-binding factor A [Fusobacterium ulcerans ATCC 49185]
 gi|317062617|ref|ZP_07927102.1| ribosome-binding factor A [Fusobacterium ulcerans ATCC 49185]
 gi|313688293|gb|EFS25128.1| ribosome-binding factor A [Fusobacterium ulcerans ATCC 49185]
          Length = 115

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 39  RDVISISEVCMSVDLRVATVYISL--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYV 96
           + ++S++ V ++ DL+ A V+ S+    DV+ D V+  LN    F+R R+   +  +RY+
Sbjct: 31  KGIVSVTSVHVTEDLKFADVFFSVMGQEDVNTDEVLEGLNQIKGFLRKRVAEEI-EIRYI 89

Query: 97  PELRFRYDTSLQSYWKLNALM 117
           PE+R + D S++   K++ L+
Sbjct: 90  PEIRVKIDDSIEHAVKISKLL 110


>gi|251792717|ref|YP_003007443.1| ribosome-binding factor A [Aggregatibacter aphrophilus NJ8700]
 gi|247534110|gb|ACS97356.1| ribosome-binding factor A [Aggregatibacter aphrophilus NJ8700]
          Length = 128

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A V+++   D    
Sbjct: 6   KRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFDHDEQ 62

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +   +  L     +IR  +G+++R LR VPE+RF YD SL    +++ L+ 
Sbjct: 63  AIAQGMKGLEKAAPYIRTLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113


>gi|168237986|ref|ZP_02663044.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737644|ref|YP_002116234.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|238693707|sp|B4TWD6|RBFA_SALSV RecName: Full=Ribosome-binding factor A
 gi|194713146|gb|ACF92367.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289067|gb|EDY28436.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 133

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVFVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|148380372|ref|YP_001254913.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 3502]
 gi|153933206|ref|YP_001384592.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 19397]
 gi|153935306|ref|YP_001388108.1| ribosome-binding factor A [Clostridium botulinum A str. Hall]
 gi|226949770|ref|YP_002804861.1| ribosome-binding factor A [Clostridium botulinum A2 str. Kyoto]
 gi|166218431|sp|A7FVZ2|RBFA_CLOB1 RecName: Full=Ribosome-binding factor A
 gi|166218432|sp|A5I4J2|RBFA_CLOBH RecName: Full=Ribosome-binding factor A
 gi|254789742|sp|C1FS58|RBFA_CLOBJ RecName: Full=Ribosome-binding factor A
 gi|148289856|emb|CAL83964.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 3502]
 gi|152929250|gb|ABS34750.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 19397]
 gi|152931220|gb|ABS36719.1| ribosome-binding factor A [Clostridium botulinum A str. Hall]
 gi|226844456|gb|ACO87122.1| ribosome-binding factor A [Clostridium botulinum A2 str. Kyoto]
 gi|322806683|emb|CBZ04252.1| ribosome-binding factor A [Clostridium botulinum H04402 065]
          Length = 120

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           RA R+ EEV+  +  +I N+    RL +  ++S+++V ++ DL+ A VY+S+   + + +
Sbjct: 5   RAGRINEEVKKEVSNIIHNDIKDPRLSA--MVSVTDVNVTKDLKYAKVYVSIFGNEKAKE 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL  ++ FIR  +GR ++ LR  PE+    D S++    ++ L+
Sbjct: 63  ESLEALKSSVGFIRKEVGRRVK-LRNTPEVIIEVDNSIERGMHIDELL 109


>gi|16766583|ref|NP_462198.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990150|ref|ZP_02571250.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231894|ref|ZP_02656952.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194470716|ref|ZP_03076700.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|198243121|ref|YP_002217258.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387117|ref|ZP_03213729.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205354189|ref|YP_002227990.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858535|ref|YP_002245186.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|20978604|sp|Q8ZLT1|RBFA_SALTY RecName: Full=Ribosome-binding factor A
 gi|226723608|sp|B5FI12|RBFA_SALDC RecName: Full=Ribosome-binding factor A
 gi|226723609|sp|B5QZV7|RBFA_SALEP RecName: Full=Ribosome-binding factor A
 gi|226723610|sp|B5REN5|RBFA_SALG2 RecName: Full=Ribosome-binding factor A
 gi|16421844|gb|AAL22157.1| ribosome-binding factor [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194457080|gb|EDX45919.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197937637|gb|ACH74970.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199604215|gb|EDZ02760.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205273970|emb|CAR38975.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205331145|gb|EDZ17909.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333937|gb|EDZ20701.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|206710338|emb|CAR34696.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261248451|emb|CBG26288.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995482|gb|ACY90367.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159835|emb|CBW19354.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312914311|dbj|BAJ38285.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225969|gb|EFX51023.1| Ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615290|gb|EFY12211.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618351|gb|EFY15242.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622844|gb|EFY19688.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626834|gb|EFY23631.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631403|gb|EFY28163.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635330|gb|EFY32044.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643465|gb|EFY40028.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647099|gb|EFY43600.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648902|gb|EFY45347.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655094|gb|EFY51405.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657697|gb|EFY53965.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664193|gb|EFY60391.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667476|gb|EFY63638.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674724|gb|EFY70816.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675643|gb|EFY71716.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682279|gb|EFY78302.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684882|gb|EFY80880.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131645|gb|ADX19075.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323191871|gb|EFZ77119.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199030|gb|EFZ84127.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204270|gb|EFZ89279.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207617|gb|EFZ92564.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211330|gb|EFZ96174.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214728|gb|EFZ99477.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221208|gb|EGA05634.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224051|gb|EGA08344.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230300|gb|EGA14419.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233276|gb|EGA17370.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239313|gb|EGA23363.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242436|gb|EGA26462.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246946|gb|EGA30912.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254121|gb|EGA37941.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255238|gb|EGA39015.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262701|gb|EGA46257.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264011|gb|EGA47519.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269397|gb|EGA52852.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625036|gb|EGE31381.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629310|gb|EGE35653.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990143|gb|AEF09126.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 133

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVFVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|330830887|ref|YP_004393839.1| ribosome-binding factor A [Aeromonas veronii B565]
 gi|328806023|gb|AEB51222.1| Ribosome-binding factor A [Aeromonas veronii B565]
          Length = 145

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 8/112 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RVG++++  +  +IL  E +D  I   ++++S+V +S DL  A +Y++ L L+   +
Sbjct: 7   RTRRVGQQIQREI-ALILQREVKDPRIG--MVTVSDVEVSRDLNYAKIYVTFLQLENDAE 63

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           R+   +  L     +IR  +G ++R LR VPELRF YD +L    +L+ L+ 
Sbjct: 64  RIKEGLQGLTEAAGYIRSLLGSAMR-LRVVPELRFYYDQTLVEGMRLSNLVT 114


>gi|293390257|ref|ZP_06634591.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950791|gb|EFE00910.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 128

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A V+++   D    
Sbjct: 6   KRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVDVSSDLAYAKVFVTFLFDHDEQ 62

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +   +  L     +IR  +G+++R LR VPE+RF YD SL    +++ L+ 
Sbjct: 63  AIAQGMKGLEKAAPYIRTLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113


>gi|153938139|ref|YP_001391715.1| ribosome-binding factor A [Clostridium botulinum F str. Langeland]
 gi|168180704|ref|ZP_02615368.1| ribosome-binding factor A [Clostridium botulinum NCTC 2916]
 gi|168184623|ref|ZP_02619287.1| ribosome-binding factor A [Clostridium botulinum Bf]
 gi|237795853|ref|YP_002863405.1| ribosome-binding factor A [Clostridium botulinum Ba4 str. 657]
 gi|166218433|sp|A7GG05|RBFA_CLOBL RecName: Full=Ribosome-binding factor A
 gi|259551954|sp|C3L0B5|RBFA_CLOB6 RecName: Full=Ribosome-binding factor A
 gi|152934035|gb|ABS39533.1| ribosome-binding factor A [Clostridium botulinum F str. Langeland]
 gi|182668591|gb|EDT80570.1| ribosome-binding factor A [Clostridium botulinum NCTC 2916]
 gi|182672289|gb|EDT84250.1| ribosome-binding factor A [Clostridium botulinum Bf]
 gi|229261048|gb|ACQ52081.1| ribosome-binding factor A [Clostridium botulinum Ba4 str. 657]
 gi|295319742|gb|ADG00120.1| ribosome-binding factor A [Clostridium botulinum F str. 230613]
          Length = 120

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           RA R+ EEV+  +  +I N+    RL +  ++S+++V ++ DL+ A VY+S+   + + +
Sbjct: 5   RAGRINEEVKKEVSNIIHNDIKDPRLSA--MVSVTDVNVTKDLKYAKVYVSIFGNEKAKE 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL  ++ FIR  +GR ++ LR  PE+    D S++    ++ L+
Sbjct: 63  ESLQALKSSVGFIRKEVGRRVK-LRNTPEVIIEVDNSIERGMHIDELL 109


>gi|323705399|ref|ZP_08116974.1| ribosome-binding factor A [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535301|gb|EGB25077.1| ribosome-binding factor A [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 119

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R  R+ EE++  +  +I   E +D  IS ++ SI+++ +S DLR A +YIS+   D    
Sbjct: 4   RIGRLSEEIKKEVSQMIFE-EIKDPRIS-NMTSITDIEVSKDLRYAKIYISVYGNDDEKK 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             I  L     FIR  +G+ ++ LRY+PEL F  D S++
Sbjct: 62  NTIEGLKSATGFIRRELGKRIK-LRYIPELIFELDNSIE 99


>gi|297588442|ref|ZP_06947085.1| ribosome-binding factor A [Finegoldia magna ATCC 53516]
 gi|297573815|gb|EFH92536.1| ribosome-binding factor A [Finegoldia magna ATCC 53516]
          Length = 121

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 4/104 (3%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           N +R  R+  E++  +   I+N+  +D  I +  +S+++V ++ DL  ATVYI+ +  D 
Sbjct: 2   NIKRVRRISSEIKKVISSSIINS-LKDPRIDKLNVSVTDVKVTNDLSFATVYIAVIGDDE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD-TSLQS 109
              + +  LN    F++ +IG S+ +LR+VP+L F+ D TS QS
Sbjct: 61  KKKQTLEGLNKAKGFLKKQIGESV-DLRHVPQLIFKIDETSEQS 103


>gi|220931629|ref|YP_002508537.1| ribosome-binding factor A [Halothermothrix orenii H 168]
 gi|254789753|sp|B8CW73|RBFA_HALOH RecName: Full=Ribosome-binding factor A
 gi|219992939|gb|ACL69542.1| ribosome-binding factor A [Halothermothrix orenii H 168]
          Length = 122

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 5/109 (4%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +RA R+GE ++  +  +IL  E +D  I    IS+++V +S DLR A V++S+  D    
Sbjct: 4   QRARRLGELLKKEISDIILR-EVKDPRIG--FISVTDVEVSNDLRHAKVFVSVYGDEKER 60

Query: 70  R-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  +  L     +IR  IG  ++ + Y PE+ FRYD SL+   ++N L+
Sbjct: 61  KETMEGLEKATGYIRKLIGERVK-VYYTPEILFRYDDSLEHGARINELL 108


>gi|312127894|ref|YP_003992768.1| ribosome-binding factor a [Caldicellulosiruptor hydrothermalis 108]
 gi|311777913|gb|ADQ07399.1| ribosome-binding factor A [Caldicellulosiruptor hydrothermalis 108]
          Length = 132

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 6/110 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R+ RV EE++  L  +I  ++ +D  +  ++ISI +V MS DLR A VY+S+  D   ++
Sbjct: 5   RSDRVSEEIKKELSDII-QHDLKDPRLCAELISIVKVNMSKDLRHAKVYVSI-FDKDKEK 62

Query: 71  V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           V   + AL     +IR  I R + +LR+ PE+ F  D S++   +++ ++
Sbjct: 63  VETTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQIL 111


>gi|148263959|ref|YP_001230665.1| ribosome-binding factor A [Geobacter uraniireducens Rf4]
 gi|189039543|sp|A5GF87|RBFA_GEOUR RecName: Full=Ribosome-binding factor A
 gi|146397459|gb|ABQ26092.1| ribosome-binding factor A [Geobacter uraniireducens Rf4]
          Length = 122

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 5/109 (4%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
           +R+ +V E V   L+  +L    +D  I    ++I+ V ++ D+ +ATVY + +  D   
Sbjct: 3   KRSEKVAEAVHE-LISELLVKGLKDPRIG--FVTITGVKVTDDMHLATVYFTVIGSDAEK 59

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                 LN    FIR  +G+SLR +RYVP++ F+YD S+   +++ +++
Sbjct: 60  KATEQGLNSARGFIRKEMGKSLR-MRYVPDIVFKYDVSVDYGYRIESIL 107


>gi|317153851|ref|YP_004121899.1| ribosome-binding factor A [Desulfovibrio aespoeensis Aspo-2]
 gi|316944102|gb|ADU63153.1| ribosome-binding factor A [Desulfovibrio aespoeensis Aspo-2]
          Length = 113

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 66/112 (58%), Gaps = 9/112 (8%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           +SRRA+R+G+++   +   +L  E QD RL    ++++S V M+ +LR+A ++ ++  D+
Sbjct: 5   SSRRAVRMGDQIMREV-ATLLVEEVQDPRL---QLVTLSGVRMNANLRIAEMFYTVSGDI 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS--YWKLNA 115
              R V   L     F+R  +G+ L+ L++ PELRF +D  L+   Y K +A
Sbjct: 61  EHRREVQQGLEKATGFLRSNLGKRLK-LQFTPELRFTFDDFLEDVVYAKPDA 111


>gi|227968183|pdb|1KKG|A Chain A, Nmr Structure Of Ribosome-Binding Factor A (Rbfa)
          Length = 108

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 6/104 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
             D V   I AL     FIR  +G+++R LR VPEL F YD SL
Sbjct: 61  DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSL 103


>gi|312622700|ref|YP_004024313.1| ribosome-binding factor a [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312793239|ref|YP_004026162.1| ribosome-binding factor a [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312876949|ref|ZP_07736924.1| ribosome-binding factor A [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796264|gb|EFR12618.1| ribosome-binding factor A [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180379|gb|ADQ40549.1| ribosome-binding factor A [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312203167|gb|ADQ46494.1| ribosome-binding factor A [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 132

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R+ RV EE++  L  +I  ++ +D  +  ++ISI +V MS DLR A VY+S+  D   ++
Sbjct: 5   RSDRVSEEIKKELSDII-QHDLKDPRLCAELISIVKVNMSKDLRHAKVYVSI-FDKDKEK 62

Query: 71  VISALNC--NIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           V S +    N K +IR  I + + +LR+ PE+ F  D S++   +++ ++
Sbjct: 63  VESTMKALENAKPYIRREISKRI-SLRFTPEITFELDNSIEYGARISQIL 111


>gi|114769583|ref|ZP_01447193.1| ribosome-binding factor A [alpha proteobacterium HTCC2255]
 gi|114549288|gb|EAU52170.1| ribosome-binding factor A [alpha proteobacterium HTCC2255]
 gi|297184255|gb|ADI20373.1| ribosome-binding factor a [uncultured alpha proteobacterium
           EB080_L27A02]
          Length = 135

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 5/105 (4%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           K P  S+R LRVGE +R A+  V+L  +  D  ++   +++ EV  + DL++A VY+ LP
Sbjct: 10  KGP--SQRQLRVGEMLRRAVSDVLLRGDIHDADLAHVSVTVGEVRSTPDLKLAIVYV-LP 66

Query: 64  L-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           L   + + VI ALN N   IR  + + L +L+Y P+L+F  D + 
Sbjct: 67  LGGENANIVIDALNRNKYEIRRSVNK-LVSLKYSPDLKFVLDRTF 110


>gi|323489592|ref|ZP_08094819.1| ribosome-binding factor A [Planococcus donghaensis MPA1U2]
 gi|323396723|gb|EGA89542.1| ribosome-binding factor A [Planococcus donghaensis MPA1U2]
          Length = 116

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RV E+++  L  +I + + +D  I    +++++V ++ DL+ ATVYIS L  D + +
Sbjct: 4   RANRVAEQMKKELSDII-SRKLKDPRIG--FVTVTDVEVTGDLQQATVYISVLGEDHAKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +  L  +  FIR  IG+ +R LR  PEL F  D+S+    +++ L+
Sbjct: 61  QTLLGLTKSKGFIRSEIGQRIR-LRKTPELSFEIDSSVAYGNRIDTLL 107


>gi|16273202|ref|NP_439440.1| ribosome-binding factor A [Haemophilus influenzae Rd KW20]
 gi|260581410|ref|ZP_05849224.1| ribosome-binding factor A [Haemophilus influenzae RdAW]
 gi|1172847|sp|P45141|RBFA_HAEIN RecName: Full=Ribosome-binding factor A
 gi|33357151|pdb|1JOS|A Chain A, Ribosome Binding Factor A(Rbfa)
 gi|1574747|gb|AAC22937.1| ribosome binding factor A (rbfA) [Haemophilus influenzae Rd KW20]
 gi|260091952|gb|EEW75901.1| ribosome-binding factor A [Haemophilus influenzae RdAW]
          Length = 128

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 66/112 (58%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D   +
Sbjct: 6   KRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDEM 62

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + ++ +  L     +IR  +G+++R LR VPE+RF YD SL    +++ L+ 
Sbjct: 63  AIEQGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113


>gi|68250153|ref|YP_249265.1| ribosome-binding factor A [Haemophilus influenzae 86-028NP]
 gi|145629355|ref|ZP_01785154.1| ribosome-binding factor A [Haemophilus influenzae 22.1-21]
 gi|145630826|ref|ZP_01786604.1| ribosome-binding factor A [Haemophilus influenzae R3021]
 gi|145633238|ref|ZP_01788969.1| ribosome-binding factor A [Haemophilus influenzae 3655]
 gi|145634362|ref|ZP_01790072.1| ribosome-binding factor A [Haemophilus influenzae PittAA]
 gi|145637806|ref|ZP_01793455.1| ribosome-binding factor A [Haemophilus influenzae PittHH]
 gi|145641331|ref|ZP_01796910.1| ribosome-binding factor A [Haemophilus influenzae R3021]
 gi|148825872|ref|YP_001290625.1| ribosome-binding factor A [Haemophilus influenzae PittEE]
 gi|229845103|ref|ZP_04465238.1| ribosome-binding factor A [Haemophilus influenzae 6P18H1]
 gi|229846816|ref|ZP_04466923.1| ribosome-binding factor A [Haemophilus influenzae 7P49H1]
 gi|260582496|ref|ZP_05850287.1| ribosome-binding factor A [Haemophilus influenzae NT127]
 gi|319896989|ref|YP_004135184.1| 30S ribosome binding factor [Haemophilus influenzae F3031]
 gi|81335423|sp|Q4QK42|RBFA_HAEI8 RecName: Full=Ribosome-binding factor A
 gi|166218442|sp|A5UBU1|RBFA_HAEIE RecName: Full=Ribosome-binding factor A
 gi|68058352|gb|AAX88605.1| ribosome-binding factor A [Haemophilus influenzae 86-028NP]
 gi|144978858|gb|EDJ88581.1| ribosome-binding factor A [Haemophilus influenzae 22.1-21]
 gi|144983708|gb|EDJ91168.1| ribosome-binding factor A [Haemophilus influenzae R3021]
 gi|144986084|gb|EDJ92674.1| ribosome-binding factor A [Haemophilus influenzae 3655]
 gi|145268342|gb|EDK08336.1| ribosome-binding factor A [Haemophilus influenzae PittAA]
 gi|145268999|gb|EDK08953.1| ribosome-binding factor A [Haemophilus influenzae PittHH]
 gi|145273874|gb|EDK13741.1| ribosome-binding factor A [Haemophilus influenzae 22.4-21]
 gi|148716032|gb|ABQ98242.1| ribosome-binding factor A [Haemophilus influenzae PittEE]
 gi|229810305|gb|EEP46024.1| ribosome-binding factor A [Haemophilus influenzae 7P49H1]
 gi|229811939|gb|EEP47633.1| ribosome-binding factor A [Haemophilus influenzae 6P18H1]
 gi|260094476|gb|EEW78373.1| ribosome-binding factor A [Haemophilus influenzae NT127]
 gi|301170027|emb|CBW29631.1| 30s ribosome binding factor [Haemophilus influenzae 10810]
 gi|309750835|gb|ADO80819.1| Ribosome binding factor A [Haemophilus influenzae R2866]
 gi|309973016|gb|ADO96217.1| Ribosome binding factor A [Haemophilus influenzae R2846]
 gi|317432493|emb|CBY80850.1| 30s ribosome binding factor [Haemophilus influenzae F3031]
          Length = 128

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D    
Sbjct: 6   KRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDET 62

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + ++ +  L     +IR  +G+++R LR VPE+RF YD SL    +++ L+ 
Sbjct: 63  AIEQGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113


>gi|296330880|ref|ZP_06873355.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674398|ref|YP_003866070.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151885|gb|EFG92759.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412642|gb|ADM37761.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 117

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S RA RVGE+++  L   I++ + +D  I    +++++V +S DL++A VYIS+  D   
Sbjct: 2   SMRANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKK 58

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  +  L     FIR  IG  +R LR  PE+ F +D S+    ++  L+
Sbjct: 59  REEALKGLEKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLI 107


>gi|295097656|emb|CBK86746.1| ribosome-binding factor A [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 134

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|281421510|ref|ZP_06252509.1| ribosome-binding factor A [Prevotella copri DSM 18205]
 gi|281404582|gb|EFB35262.1| ribosome-binding factor A [Prevotella copri DSM 18205]
          Length = 111

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   ++S+++V +S DL + T Y+S+      + ++  +N N K IR  +G+ +RN
Sbjct: 24  QTRMMHGVMVSVTKVRVSPDLSICTAYLSVFPSEKGEEILKNINANEKTIRFDLGKKVRN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL     ++ L+
Sbjct: 84  QLRIIPELRFFLDDSLDYLEHIDELL 109


>gi|299823029|ref|ZP_07054915.1| ribosome-binding factor A [Listeria grayi DSM 20601]
 gi|299816558|gb|EFI83796.1| ribosome-binding factor A [Listeria grayi DSM 20601]
          Length = 114

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA R+ E+++  L   ILN + +D  +    ++I++V ++ DL+ AT+YIS L  +   +
Sbjct: 4   RANRIAEQMKKEL-GDILNRKLKDPRLG--FVTITDVEITGDLQQATIYISVLGEEKERE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL     FIR  IG  +R LR VPEL+F  D S++   +++ L+
Sbjct: 61  NTLLALEKAHGFIRSEIGSRIR-LRKVPELQFALDGSIEYGNRIDELL 107


>gi|225427802|ref|XP_002270280.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 223

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 15/123 (12%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEF------------QDRLISRDVISISEVCMSVDLRV 55
           N RR   V +++R  L  ++L ++              DR +S  + +IS+V +S DL+V
Sbjct: 60  NQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGADRYLS-SLTTISDVEVSADLQV 118

Query: 56  ATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
             VY+S+  D     V I+ L    K++R  +GR ++ LR  PE+RF  D SL+   ++ 
Sbjct: 119 VKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMK-LRLTPEIRFVEDESLERGSRVI 177

Query: 115 ALM 117
           A++
Sbjct: 178 AIL 180


>gi|73748749|ref|YP_307988.1| ribosome-binding factor A [Dehalococcoides sp. CBDB1]
 gi|147669515|ref|YP_001214333.1| ribosome-binding factor A [Dehalococcoides sp. BAV1]
 gi|289432775|ref|YP_003462648.1| ribosome-binding factor A [Dehalococcoides sp. GT]
 gi|123619752|sp|Q3ZXU4|RBFA_DEHSC RecName: Full=Ribosome-binding factor A
 gi|189039538|sp|A5FQR5|RBFA_DEHSB RecName: Full=Ribosome-binding factor A
 gi|73660465|emb|CAI83072.1| ribosome-binding factor A [Dehalococcoides sp. CBDB1]
 gi|146270463|gb|ABQ17455.1| ribosome-binding factor A [Dehalococcoides sp. BAV1]
 gi|288946495|gb|ADC74192.1| ribosome-binding factor A [Dehalococcoides sp. GT]
          Length = 118

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 6/111 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           SRR  ++ +  R+ +   +L  E +D RL +  ++S++EV +S D+R A VY+S L  D 
Sbjct: 2   SRRIKKLNQLFRADIS-ALLQKEIRDPRLDT--LLSVNEVDISEDMRHANVYVSHLAGDE 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             D +++ALN    F R  I +   ++RY+P   F +D +++   +LN L+
Sbjct: 59  HKDEILAALNAAAGFFRTEIAKKT-DIRYMPVFHFVWDITIERGVRLNTLI 108


>gi|292669513|ref|ZP_06602939.1| ribosome-binding factor A [Selenomonas noxia ATCC 43541]
 gi|292648876|gb|EFF66848.1| ribosome-binding factor A [Selenomonas noxia ATCC 43541]
          Length = 133

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 11/109 (10%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISR------DVISISEVCMSVDLRVATVY 59
           P+  RRAL    +VR   +  ++  E  D +           ++++ V  + DLR A +Y
Sbjct: 3   PRERRRAL---AKVRVEKLQELMKQEISDIIFHELKDPRIGFVTVTSVACTEDLREAKIY 59

Query: 60  ISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           +S+  D    R  ++ LN ++ F+R  IG+ +R LR+ PE+ F  DTSL
Sbjct: 60  VSVMGDEKKARDTLNGLNSSLGFVRREIGKRIR-LRFTPEISFALDTSL 107


>gi|268592824|ref|ZP_06127045.1| ribosome-binding factor A [Providencia rettgeri DSM 1131]
 gi|291311609|gb|EFE52062.1| ribosome-binding factor A [Providencia rettgeri DSM 1131]
          Length = 136

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 13/121 (10%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   RA RV +E++  +  +IL  E +D  I   + ++S V +S DL    V+++   +
Sbjct: 2   AKEFSRAQRVAQEMQKEI-AIILQREIKDPRIG--MATVSGVELSRDLAYGKVFVTF-FN 57

Query: 66  VSPDRV--------ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           ++ D+         I ALN    FIR  IG+++R LR +PEL F YD SL    +++ L+
Sbjct: 58  IANDKSEEEMVADGIKALNEASGFIRSLIGKAMR-LRIIPELTFEYDNSLVDGMRMSNLV 116

Query: 118 C 118
            
Sbjct: 117 S 117


>gi|88607832|ref|YP_505050.1| ribosome-binding factor A [Anaplasma phagocytophilum HZ]
 gi|88598895|gb|ABD44365.1| ribosome-binding factor A [Anaplasma phagocytophilum HZ]
          Length = 118

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
            R+L+V   ++ AL  + L  EF D      +IS+SEV +  DLR AT+++ +    V  
Sbjct: 10  HRSLKVSSVLKKALSELFLR-EFYDL---STLISVSEVKVGEDLRNATIFVVVRGKGVDG 65

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL-NALMCL 119
           D ++ ALN +   +R  + + L+ LRYVP L F+ D   +++ ++ +AL  L
Sbjct: 66  DEIVRALNASSNVVRKSVFKYLK-LRYVPRLHFKLDVEFENFLRISDALAVL 116


>gi|91762478|ref|ZP_01264443.1| Ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718280|gb|EAS84930.1| Ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1002]
          Length = 122

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
           S+R LRVGE +R +L  +   NE +   +  + I+++EV MS DL++A  Y+ LPL    
Sbjct: 10  SQRQLRVGEMIRQSLGMIFARNEAKVPNLETNTITVTEVKMSQDLKIAKAYV-LPLGGKD 68

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + VI  L      IR  + + +  ++Y+P++ F  D S +   K+  L+
Sbjct: 69  SELVIKKLKEYSFLIRKALSKKI-IMKYLPKILFAKDDSFEYAEKIENLI 117


>gi|91206050|ref|YP_538405.1| ribosome-binding factor A [Rickettsia bellii RML369-C]
 gi|157826584|ref|YP_001495648.1| ribosome-binding factor A [Rickettsia bellii OSU 85-389]
 gi|122425244|sp|Q1RH48|RBFA_RICBR RecName: Full=Ribosome-binding factor A
 gi|166219400|sp|A8GUU4|RBFA_RICB8 RecName: Full=Ribosome-binding factor A
 gi|91069594|gb|ABE05316.1| Ribosome-binding factor A [Rickettsia bellii RML369-C]
 gi|157801888|gb|ABV78611.1| ribosome-binding factor A [Rickettsia bellii OSU 85-389]
          Length = 123

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK    +NS R  +V   +  AL+ ++   +  D  +    ++I+++ ++ DL++A  Y 
Sbjct: 1   MKKLTSENSHRQQKVASIINEALIEILHRGKMLDPRLYDCPLTITKIIVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++P  +  +LN +   IR  +   + N++Y P++RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTPQEITESLNNSKNAIRNFVTGKI-NMKYSPDIRFHYDHGFDNALKVEQLL 117


>gi|299144049|ref|ZP_07037129.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518534|gb|EFI42273.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 117

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 4/111 (3%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           N++R  ++ EEVR A+   I+ ++ +D  I  D+ISIS V ++ DL  A VYIS L  D 
Sbjct: 2   NNKRTHQISEEVRRAISD-IVQHKLKDPRIP-DIISISHVDVTNDLSFAKVYISILDDDN 59

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  I+ +N    FI+  + + L  +R +PEL F  D S++   K++ ++
Sbjct: 60  KIEEAINGINSAKGFIKRELAK-LVKIRAIPELIFVKDDSIEIGMKMSKII 109


>gi|242373562|ref|ZP_04819136.1| ribosome-binding factor A [Staphylococcus epidermidis M23864:W1]
 gi|242348925|gb|EES40527.1| ribosome-binding factor A [Staphylococcus epidermidis M23864:W1]
          Length = 118

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  +M ++ N + +D  +    ++I++V ++ DL  A VY++ L  +   D
Sbjct: 7   RAERVGEQMKQEIMDIV-NTKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNEKEVD 63

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
               AL     FI+  +G  +R LR +P+L F YD S++
Sbjct: 64  NTFKALEKAKGFIKSELGSRMR-LRIIPDLTFEYDESIE 101


>gi|20807839|ref|NP_623010.1| ribosome-binding factor A [Thermoanaerobacter tengcongensis MB4]
 gi|22096031|sp|Q8RA38|RBFA_THETN RecName: Full=Ribosome-binding factor A
 gi|20516401|gb|AAM24614.1| Ribosome-binding factor A [Thermoanaerobacter tengcongensis MB4]
          Length = 122

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R+ R+ EE++  +  +IL  E +D  I + ++SI+++ ++ DLR A VY+S+       R
Sbjct: 7   RSHRLSEELKKEISKMILE-EIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEEKR 64

Query: 71  -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                L     +IR  IGR ++ +RY PE+ F  D S++   K++ ++
Sbjct: 65  ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDHSIEYGAKISEIL 111


>gi|307129386|ref|YP_003881402.1| 30S ribosome binding factor [Dickeya dadantii 3937]
 gi|306526915|gb|ADM96845.1| 30S ribosome binding factor [Dickeya dadantii 3937]
          Length = 133

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 7/115 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +I+  E +D  +   + ++S V +S DL  A V+++   D 
Sbjct: 3   KEFSRTQRVAQEMQKEI-AIIIQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLNDN 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            P++V   + AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 60  EPEQVKAGVKALQDASGFIRMLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 113


>gi|260435606|ref|ZP_05789576.1| ribosome-binding factor A [Synechococcus sp. WH 8109]
 gi|260413480|gb|EEX06776.1| ribosome-binding factor A [Synechococcus sp. WH 8109]
          Length = 140

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
             RR  RV   +R  +  +++N   +D  + + ++SI+EV +S DL+   +++S+  +  
Sbjct: 3   QGRRVERVAALIRKEVSQLMING-IRDERVHQGMVSITEVEVSGDLQHCKIFVSVFGEAQ 61

Query: 68  P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             D+V+  L     F+RG +GR L  +R  PE+ F+ D  L+    +  L+
Sbjct: 62  ERDQVLEGLEAASGFLRGELGRRL-QMRRAPEVVFQLDRGLERGTSVLGLL 111


>gi|18310667|ref|NP_562601.1| ribosome-binding factor A [Clostridium perfringens str. 13]
 gi|110800717|ref|YP_696372.1| ribosome-binding factor A [Clostridium perfringens ATCC 13124]
 gi|110802728|ref|YP_698972.1| ribosome-binding factor A [Clostridium perfringens SM101]
 gi|168211427|ref|ZP_02637052.1| ribosome-binding factor A [Clostridium perfringens B str. ATCC
           3626]
 gi|168214482|ref|ZP_02640107.1| ribosome-binding factor A [Clostridium perfringens CPE str. F4969]
 gi|168216972|ref|ZP_02642597.1| ribosome-binding factor A [Clostridium perfringens NCTC 8239]
 gi|169342675|ref|ZP_02863716.1| ribosome-binding factor A [Clostridium perfringens C str. JGS1495]
 gi|182626365|ref|ZP_02954119.1| ribosome-binding factor A [Clostridium perfringens D str. JGS1721]
 gi|20978576|sp|Q8XJR9|RBFA_CLOPE RecName: Full=Ribosome-binding factor A
 gi|123049758|sp|Q0TPR8|RBFA_CLOP1 RecName: Full=Ribosome-binding factor A
 gi|123146056|sp|Q0SSD5|RBFA_CLOPS RecName: Full=Ribosome-binding factor A
 gi|18145348|dbj|BAB81391.1| ribosome-binding factor A [Clostridium perfringens str. 13]
 gi|110675364|gb|ABG84351.1| ribosome-binding factor A [Clostridium perfringens ATCC 13124]
 gi|110683229|gb|ABG86599.1| ribosome-binding factor A [Clostridium perfringens SM101]
 gi|169299181|gb|EDS81251.1| ribosome-binding factor A [Clostridium perfringens C str. JGS1495]
 gi|170710576|gb|EDT22758.1| ribosome-binding factor A [Clostridium perfringens B str. ATCC
           3626]
 gi|170714032|gb|EDT26214.1| ribosome-binding factor A [Clostridium perfringens CPE str. F4969]
 gi|177908316|gb|EDT70864.1| ribosome-binding factor A [Clostridium perfringens D str. JGS1721]
 gi|182380987|gb|EDT78466.1| ribosome-binding factor A [Clostridium perfringens NCTC 8239]
          Length = 116

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
           R  R+ EEVR  +  +I N     RL +  ++S+++V ++ DLR A V++SL    D   
Sbjct: 5   RGKRINEEVRKEVSDIIRNQIKDPRLTA--MVSVTQVEVTKDLRYAKVFVSLFAKNDEEK 62

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  + AL  +  FIR  +G  ++ LR  PE+ F  D S+ +   + +L+
Sbjct: 63  EESLKALKSSAGFIRREVGNRVK-LRSTPEILFEEDNSIDNAMYIESLL 110


>gi|329123371|ref|ZP_08251935.1| ribosome-binding factor A [Haemophilus aegyptius ATCC 11116]
 gi|327470953|gb|EGF16408.1| ribosome-binding factor A [Haemophilus aegyptius ATCC 11116]
          Length = 128

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
           +R+ R+ +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D    
Sbjct: 6   KRSDRIAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDET 62

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + ++ +  L     +IR  +G+++R LR VPE+RF YD SL    +++ L+ 
Sbjct: 63  AIEQSMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113


>gi|320540178|ref|ZP_08039833.1| 30s ribosome binding factor [Serratia symbiotica str. Tucson]
 gi|320029844|gb|EFW11868.1| 30s ribosome binding factor [Serratia symbiotica str. Tucson]
          Length = 136

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 11/120 (9%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---- 61
            K   R+ RV +E++  +  +IL  E +D  I   + ++S V +S DL  A VY++    
Sbjct: 2   AKEFSRSQRVAQEMQKEI-AIILQREIKDPRIG--MATVSGVEISRDLAYAKVYVTFLNV 58

Query: 62  LPLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           L  +  PD+V   I AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 59  LAENHDPDQVTNGIKALQDAAGYIRTLLGKAMR-LRVVPELTFVYDNSLVEGMRMSNLVT 117


>gi|238927227|ref|ZP_04658987.1| ribosome-binding factor A [Selenomonas flueggei ATCC 43531]
 gi|238885009|gb|EEQ48647.1| ribosome-binding factor A [Selenomonas flueggei ATCC 43531]
          Length = 118

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGR 85
           I+ NE +D  I    ++++ V  + DLR A +Y+S+  D    R  ++ LN ++ F+R  
Sbjct: 15  IIFNELKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKKARDTLNGLNSSLGFVRRE 72

Query: 86  IGRSLRNLRYVPELRFRYDTSL 107
           IG+ +R LR+ PE+ F  DTSL
Sbjct: 73  IGKRIR-LRFTPEISFALDTSL 93


>gi|251791034|ref|YP_003005755.1| ribosome-binding factor A [Dickeya zeae Ech1591]
 gi|247539655|gb|ACT08276.1| ribosome-binding factor A [Dickeya zeae Ech1591]
          Length = 133

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 7/115 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +I+  E +D  +   + ++S V +S DL  A V+++   D 
Sbjct: 3   KEFSRTQRVAQEMQKEI-AIIIQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLNDN 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            P++V   + AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 60  EPEQVKAGVKALQDASGFIRMLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 113


>gi|218290089|ref|ZP_03494251.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius LAA1]
 gi|218239798|gb|EED06987.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius LAA1]
          Length = 118

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           RA +V E+++  L   IL +E +D  I    ++I+ V +S DL+ A VY+S+   +V  +
Sbjct: 5   RAQKVAEQMKKELAD-ILQHELKDPRIG--FVTITRVEVSGDLQHAKVYVSVYGPEVEKE 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
             +  L     FIRG I R L ++R  PEL FR D S
Sbjct: 62  ATLGVLTKAAGFIRGEIARRL-HMRIAPELVFRLDES 97


>gi|315652144|ref|ZP_07905142.1| ribosome-binding factor A [Eubacterium saburreum DSM 3986]
 gi|315485636|gb|EFU76020.1| ribosome-binding factor A [Eubacterium saburreum DSM 3986]
          Length = 123

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS ++  +  EV   +  +I   E +D  ++  V S+++  ++ DL+ AT+Y+S L  D
Sbjct: 3   KNSLKSTMINSEVMKTVSEII-RGEVKDPRVA-PVTSVTDAEVTTDLKYATIYVSVLGDD 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               + +  L  +  FIR  + R L NLR  PEL+F  D SL    K++ L+
Sbjct: 61  EQSKKTLLGLKSSAGFIRKELARRL-NLRNTPELKFVLDESLAYGMKMDKLI 111


>gi|15602622|ref|NP_245694.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431798|sp|P57872|RBFA_PASMU RecName: Full=Ribosome-binding factor A
 gi|12721055|gb|AAK02841.1| RbfA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 132

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 15/116 (12%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A V+++   D    
Sbjct: 6   KRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFDNDE- 61

Query: 70  RVISALNCNIK-------FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              SA++  +K       +IR  +G+++R LR VPE+RF YD SL    +++ L+ 
Sbjct: 62  ---SAIDAGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDRSLIEGMRMSNLVS 113


>gi|242240748|ref|YP_002988929.1| ribosome-binding factor A [Dickeya dadantii Ech703]
 gi|242132805|gb|ACS87107.1| ribosome-binding factor A [Dickeya dadantii Ech703]
          Length = 132

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 7/111 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RV +E++  +  +I+  E +D  +   + ++S V +S DL  A V+++   D  P++
Sbjct: 7   RTQRVAQEMQKEI-AIIIQREIKDPRVG--MATVSSVDVSRDLAYAKVFVTFLNDNEPEQ 63

Query: 71  V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 64  IKLGIKALQDASGFIRMLLGKAMR-LRIVPELTFAYDNSLVEGMRMSNLVS 113


>gi|52080272|ref|YP_079063.1| ribosome-binding factor A [Bacillus licheniformis ATCC 14580]
 gi|52785649|ref|YP_091478.1| ribosome-binding factor A [Bacillus licheniformis ATCC 14580]
 gi|319645948|ref|ZP_08000178.1| ribosome-binding factor A [Bacillus sp. BT1B_CT2]
 gi|61214855|sp|Q65JH9|RBFA_BACLD RecName: Full=Ribosome-binding factor A
 gi|52003483|gb|AAU23425.1| ribosome-binding factor A [Bacillus licheniformis ATCC 14580]
 gi|52348151|gb|AAU40785.1| RbfA [Bacillus licheniformis ATCC 14580]
 gi|317391698|gb|EFV72495.1| ribosome-binding factor A [Bacillus sp. BT1B_CT2]
          Length = 117

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           RA RVGE+++  L   I+  + +D  I    +++++V +S DL++A VYIS+  D    +
Sbjct: 4   RATRVGEQMKKEL-GDIIGRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKKRE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  +G  +R LR  PE+ F +D S+    ++  L+
Sbjct: 61  ETLKGLAKAKGFIRSELGNRIR-LRKTPEIHFEFDESIDYGNRIETLI 107


>gi|294634516|ref|ZP_06713051.1| ribosome-binding factor A [Edwardsiella tarda ATCC 23685]
 gi|291092030|gb|EFE24591.1| ribosome-binding factor A [Edwardsiella tarda ATCC 23685]
          Length = 132

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 7/111 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RV +E++  +  +IL  E +D  +   + ++S V +S DL  A V+++   D  P+ 
Sbjct: 7   RTQRVAQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLNDGEPEA 63

Query: 71  V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           V   + AL     FIR  +G+++R LR VPEL F YD+SL    +++ L+ 
Sbjct: 64  VKAGLKALQDASGFIRMLLGKAMR-LRVVPELTFSYDSSLVEGMRMSNLVS 113


>gi|269958720|ref|YP_003328507.1| ribosome-binding factor A [Anaplasma centrale str. Israel]
 gi|269848549|gb|ACZ49193.1| ribosome-binding factor A [Anaplasma centrale str. Israel]
          Length = 117

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 5   NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP- 63
            P    R+L+V   ++ AL  + +  EF D      ++SIS V +S D R ATV++++  
Sbjct: 5   TPSAGLRSLKVASVLKRALAQLFIR-EFYDL---SSMLSISGVKVSEDTRNATVFVAIGD 60

Query: 64  LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
             V    V++ALN     IR  + R L+ LRYVP L F+ D    ++ +++ +M   K
Sbjct: 61  RSVDGGEVVAALNDASNSIRRAVFRYLK-LRYVPRLHFKLDVEFDNFLRISEIMAATK 117


>gi|271499175|ref|YP_003332200.1| ribosome-binding factor A [Dickeya dadantii Ech586]
 gi|270342730|gb|ACZ75495.1| ribosome-binding factor A [Dickeya dadantii Ech586]
          Length = 133

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 7/115 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +I+  E +D  +   + ++S V +S DL  A V+++   D 
Sbjct: 3   KEFSRTQRVAQEMQKEI-AIIIQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLNDN 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            P++V   + AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 60  EPEQVKAGVKALQDASGFIRMLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 113


>gi|71083095|ref|YP_265814.1| ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1062]
 gi|123647144|sp|Q4FNM8|RBFA_PELUB RecName: Full=Ribosome-binding factor A
 gi|71062208|gb|AAZ21211.1| Ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1062]
          Length = 122

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 5/111 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
           S+R LRVGE +R +L  +   NE +   +  + I+++EV MS DL++A  Y+ LPL    
Sbjct: 10  SQRQLRVGEMIRQSLGMIFARNEAKVPNLETNTITVTEVKMSQDLKIAKAYV-LPLGGKD 68

Query: 68  PDRVISAL-NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + VI  L  C+   IR  + + +  ++Y+P++ F  D S +   K+  L+
Sbjct: 69  SELVIKKLKECSF-LIRKALSKKI-IMKYLPKILFAKDDSFEYAEKIENLI 117


>gi|205373416|ref|ZP_03226220.1| ribosome-binding factor A [Bacillus coahuilensis m4-4]
          Length = 117

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 63/109 (57%), Gaps = 4/109 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R+ R+GE+++  L   I++ + +D  I    +++++V ++ DL+ A VYI++  D   
Sbjct: 2   SLRSNRIGEQMKKEL-GDIISRKIKDPRIG--FVTVTDVQVTGDLQQAKVYITVLDDSKR 58

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  +  L+    FIR  IG  +R LR  PEL F +D S+Q   ++ +++
Sbjct: 59  EDTLKGLSKAKGFIRSEIGSRIR-LRKTPELLFEFDESIQYGNRIESII 106


>gi|120556254|ref|YP_960605.1| ribosome-binding factor A [Marinobacter aquaeolei VT8]
 gi|166218447|sp|A1U5Z9|RBFA_MARAV RecName: Full=Ribosome-binding factor A
 gi|120326103|gb|ABM20418.1| ribosome-binding factor A [Marinobacter aquaeolei VT8]
          Length = 143

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 66/114 (57%), Gaps = 11/114 (9%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-----LD 65
           R  R+G++++  L  +I   E +D  +   ++++++V +S DL  A +YISL       +
Sbjct: 7   RVDRIGDQMQRELAQLI-QREVKDPRVG--MVTVNDVKVSRDLGYADIYISLLSTEELTE 63

Query: 66  VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            SP+    ++ LN    F+RG++GR+++ LR VP LRF +D  L    K++ L+
Sbjct: 64  DSPEVQDSLTVLNKASGFLRGQVGRAMK-LRVVPHLRFHFDKLLGQSRKMDRLI 116


>gi|304316861|ref|YP_003852006.1| ribosome-binding factor A [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778363|gb|ADL68922.1| ribosome-binding factor A [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 119

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R+ R+ EE++  +  +I   E +D  IS ++ SI+++ ++ DLR A +YIS+   D    
Sbjct: 4   RSGRLSEEIKKEVSKMIFE-EIKDPRIS-NMTSITDIEVTKDLRYAKIYISVYGNDDEKK 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             +  L     FIR  +G+ ++ LRY PEL F  D S++
Sbjct: 62  STLEGLKSATGFIRHELGKRIK-LRYTPELIFEIDNSIE 99


>gi|37523601|ref|NP_926978.1| ribosome binding facror A [Gloeobacter violaceus PCC 7421]
 gi|39931738|sp|Q7NE48|RBFA_GLOVI RecName: Full=Ribosome-binding factor A
 gi|35214606|dbj|BAC91973.1| ribosome binding facror A [Gloeobacter violaceus PCC 7421]
          Length = 129

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
            + R  RVGE ++  +  ++L  + +D  +   ++S+++V ++ DLR A +++S+     
Sbjct: 2   KTHRPARVGELIKREVSDMLLRGQIKDPRVGAGLVSVTDVEVTGDLRQAKIFVSIFGTPE 61

Query: 68  PDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             ++ + AL     F+R  IG  +R LRY PE+ F  D SL+   ++  L+
Sbjct: 62  AQKLTMMALAEVTGFVRQEIGHRIR-LRYTPEIAFVQDRSLERGARITRLI 111


>gi|325955537|ref|YP_004239197.1| ribosome-binding factor A [Weeksella virosa DSM 16922]
 gi|323438155|gb|ADX68619.1| Ribosome-binding factor A [Weeksella virosa DSM 16922]
          Length = 119

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           +S R  +VG+  +  L       ++   L   +++S++EV ++ DL +A V+IS+  +  
Sbjct: 2   DSNRQQKVGKLFQEELAEAF--RKWASELFPGNLVSVTEVKVTPDLSIAKVFISIFPNDK 59

Query: 68  PDRVISALNCNIKFIRGRIGR-SLRNLRYVPELRFRYDTSLQSYWKLN 114
            D ++  +N    + RG + + + +N+R  PEL FR D +L    K++
Sbjct: 60  KDEILQEINTQAPYFRGILSKGAAKNMRLTPELIFRLDPTLDEMDKID 107


>gi|260771813|ref|ZP_05880731.1| ribosome-binding factor A [Vibrio metschnikovii CIP 69.14]
 gi|260613105|gb|EEX38306.1| ribosome-binding factor A [Vibrio metschnikovii CIP 69.14]
          Length = 131

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 6/115 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
           PK   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            + +P+  I AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+ 
Sbjct: 59  GEQTPESCIKALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLVT 112


>gi|304437174|ref|ZP_07397135.1| ribosome-binding factor A [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369836|gb|EFM23500.1| ribosome-binding factor A [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 136

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGR 85
           I+ NE +D  I    ++++ V  + DLR A +Y+S+  D    R  ++ LN ++ F+R  
Sbjct: 33  IIFNELKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKKARDTLNGLNSSLGFVRRE 90

Query: 86  IGRSLRNLRYVPELRFRYDTSL 107
           IG+ +R LR+ PE+ F  DTSL
Sbjct: 91  IGKRIR-LRFTPEISFSLDTSL 111


>gi|288803485|ref|ZP_06408917.1| ribosome-binding factor A [Prevotella melaninogenica D18]
 gi|302346037|ref|YP_003814390.1| ribosome-binding factor A [Prevotella melaninogenica ATCC 25845]
 gi|288334095|gb|EFC72538.1| ribosome-binding factor A [Prevotella melaninogenica D18]
 gi|302149916|gb|ADK96178.1| ribosome-binding factor A [Prevotella melaninogenica ATCC 25845]
          Length = 111

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   ++S++ V +S DL + T Y+S+      D ++  +N N K IR  +G+ + N
Sbjct: 24  QTRMMHGVLVSVTRVKVSPDLSICTAYLSIFPSEKGDEILKNINANEKTIRYDLGQRVHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYLERIDELL 109


>gi|260593343|ref|ZP_05858801.1| ribosome-binding factor A [Prevotella veroralis F0319]
 gi|260534619|gb|EEX17236.1| ribosome-binding factor A [Prevotella veroralis F0319]
          Length = 111

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   ++S++ V +S DL + T Y+S+      D ++  +N N K IR  +G+ + N
Sbjct: 24  QTRMMHGVLVSVTRVKVSPDLSICTAYLSIFPSEKGDELLKNINANEKTIRYELGQRVHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYIERIDELL 109


>gi|28210962|ref|NP_781906.1| ribosome-binding factor A [Clostridium tetani E88]
 gi|32171612|sp|Q895J7|RBFA_CLOTE RecName: Full=Ribosome-binding factor A
 gi|28203401|gb|AAO35843.1| ribosome-binding factor A [Clostridium tetani E88]
          Length = 121

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
           RA R+ EEV+  +  +I   + +D  IS  ++S+++V ++ D R A VY+S+  D  S +
Sbjct: 5   RAGRINEEVKKEISSII-RMDLKDPRISA-MVSVTKVDVTKDQRYAKVYVSIFGDEKSKE 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL  +  FIR  +G  ++ LRY PE+  + D S++    +++++
Sbjct: 63  ETLEALKSSSGFIRREVGHRIK-LRYTPEIIIQNDDSIEHGMHIDSIL 109


>gi|16078728|ref|NP_389547.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309543|ref|ZP_03591390.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313867|ref|ZP_03595672.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318790|ref|ZP_03600084.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323062|ref|ZP_03604356.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321315432|ref|YP_004207719.1| ribosome-binding factor A [Bacillus subtilis BSn5]
 gi|418464|sp|P32731|RBFA_BACSU RecName: Full=Ribosome-binding factor A
 gi|580902|emb|CAA79236.1| ORF6 [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634037|emb|CAB13538.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
           168]
 gi|320021706|gb|ADV96692.1| ribosome-binding factor A [Bacillus subtilis BSn5]
          Length = 117

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S RA RVGE+++  L   I++ + +D  I    +++++V +S DL++A VYIS+  D   
Sbjct: 2   SMRANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKK 58

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  +  L     FIR  IG  +R LR  PE+ F +D S+    ++  L+
Sbjct: 59  REEALKGLAKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLI 107


>gi|330836564|ref|YP_004411205.1| Ribosome-binding factor A [Spirochaeta coccoides DSM 17374]
 gi|329748467|gb|AEC01823.1| Ribosome-binding factor A [Spirochaeta coccoides DSM 17374]
          Length = 124

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 3/105 (2%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DRVI 72
           R+   VR A+  +I++ E ++ L++  ++S++ V +S D   ATVY+S P+D    +  I
Sbjct: 8   RIESRVREAVGMLIVSGEIKNPLLNT-LVSVTRVVVSKDNAYATVYLSAPIDDHDLECSI 66

Query: 73  SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +AL     FI+ R+G  L   R  P L F+ D +++   ++NAL+
Sbjct: 67  TALTKAAGFIQKRVGDFL-GTRNTPRLTFKADVAVRDGDEINALL 110


>gi|322514413|ref|ZP_08067456.1| ribosome-binding factor A [Actinobacillus ureae ATCC 25976]
 gi|322119661|gb|EFX91719.1| ribosome-binding factor A [Actinobacillus ureae ATCC 25976]
          Length = 137

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D    
Sbjct: 16  KRSDRVAQELQKEI-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDQS 72

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + ++ +  L     +IR  +G+++R LR VPELRF YD SL    +++ L+ 
Sbjct: 73  AIEQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDQSLVEGMRMSNLVS 123


>gi|238918425|ref|YP_002931939.1| ribosome-binding factor A [Edwardsiella ictaluri 93-146]
 gi|259551976|sp|C5BFB8|RBFA_EDWI9 RecName: Full=Ribosome-binding factor A
 gi|238867993|gb|ACR67704.1| ribosome-binding factor A, putative [Edwardsiella ictaluri 93-146]
          Length = 132

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RV +E++  +  +IL  E +D  +   + ++S V +S DL  A V+++   D  P+ 
Sbjct: 7   RTQRVAQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLNDGEPET 63

Query: 71  VIS---ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           V S   AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 64  VKSGLKALQDASGFIRMLLGKAMR-LRVVPELTFAYDASLVEGMRMSNLVS 113


>gi|270265060|ref|ZP_06193323.1| ribosome-binding factor A [Serratia odorifera 4Rx13]
 gi|270040994|gb|EFA14095.1| ribosome-binding factor A [Serratia odorifera 4Rx13]
          Length = 136

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 11/119 (9%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
           K   R  RV +E++  +  +IL  E +D  I   + ++S V +S DL  A VY++    L
Sbjct: 3   KEFSRGQRVAQEMQKEI-AIILQREVKDPRIG--MATVSGVEVSRDLAYAKVYVTFLNVL 59

Query: 63  PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             +  PD V   I AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 60  TENADPDLVPKGIKALEDASGYIRTLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVT 117


>gi|78213858|ref|YP_382637.1| ribosome-binding factor A [Synechococcus sp. CC9605]
 gi|123577495|sp|Q3AH50|RBFA_SYNSC RecName: Full=Ribosome-binding factor A
 gi|78198317|gb|ABB36082.1| ribosome-binding factor A [Synechococcus sp. CC9605]
          Length = 140

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
             RR  RV   +R  +  +++N   +D  +   ++SI+EV +S DL+   +++S+  +  
Sbjct: 3   QGRRVERVAALIRKEVSELMING-IRDERVHHGMVSITEVEVSGDLQHCKIFVSVFGEAQ 61

Query: 68  P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             D+V+  L     F+RG +GR L  +R  PE+ F+ D  L+    +  L+
Sbjct: 62  ERDQVLEGLQAASGFLRGELGRRL-QMRRAPEVVFQLDRGLERGTSVLGLL 111


>gi|121998527|ref|YP_001003314.1| ribosome-binding factor A [Halorhodospira halophila SL1]
 gi|166218443|sp|A1WXV0|RBFA_HALHL RecName: Full=Ribosome-binding factor A
 gi|121589932|gb|ABM62512.1| ribosome-binding factor A [Halorhodospira halophila SL1]
          Length = 126

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PL 64
           K+  R+ R+ E++R  L  VI ++    R+ S   ++ISEV +S DL  ATVY+++    
Sbjct: 3   KDYPRSRRIAEQLRRELAEVIRDDVDDPRVGS---VTISEVQVSRDLAHATVYVTVLGAE 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                  I  LN    F+R ++ R +R  R  P LRF +DT+     +L+AL+
Sbjct: 60  AAEAQAGIDILNKAHGFLRSQVARRIRAKR-TPSLRFLHDTAFDRGARLSALI 111


>gi|311068188|ref|YP_003973111.1| ribosome-binding factor A [Bacillus atrophaeus 1942]
 gi|310868705|gb|ADP32180.1| ribosome-binding factor A [Bacillus atrophaeus 1942]
          Length = 117

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S RA RVGE+++  L   I++ + +D  I    +++++V ++ DL++A VYIS+  D   
Sbjct: 2   SMRANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVTGDLQIAKVYISVLGDEKK 58

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  +  L     FIR  IG  +R LR  PE+ F +D S+    ++  L+
Sbjct: 59  REEALKGLEKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLI 107


>gi|119944580|ref|YP_942260.1| ribosome-binding factor A [Psychromonas ingrahamii 37]
 gi|166219396|sp|A1ST46|RBFA_PSYIN RecName: Full=Ribosome-binding factor A
 gi|119863184|gb|ABM02661.1| ribosome-binding factor A [Psychromonas ingrahamii 37]
          Length = 133

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 6/115 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
            K   R  RV ++V+  L   IL  E +D  I   +++IS V ++ DL  A V+++    
Sbjct: 2   AKEYSRTSRVSQQVQKELAR-ILQQEVKDPRIG--MVTISGVDVTRDLAYAKVFVTFLTV 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            D + D  +  LN    +IR  +G+++R LR VPE+RF +D++L    +++ L+ 
Sbjct: 59  GDQTNDESLEGLNAAAGYIRRLLGKAMR-LRIVPEVRFCFDSTLTEGLRISELVS 112


>gi|319776233|ref|YP_004138721.1| 30s ribosome binding factor [Haemophilus influenzae F3047]
 gi|317450824|emb|CBY87047.1| 30s ribosome binding factor [Haemophilus influenzae F3047]
          Length = 128

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 64/112 (57%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP- 68
           +R+ R+ +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D    
Sbjct: 6   KRSDRIAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDET 62

Query: 69  --DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             ++ +  L     +IR  +G+++R LR VPE+RF YD SL    +++ L+ 
Sbjct: 63  VIEQSMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113


>gi|226226963|ref|YP_002761069.1| ribosome-binding factor A [Gemmatimonas aurantiaca T-27]
 gi|259551997|sp|C1A8N9|RBFA_GEMAT RecName: Full=Ribosome-binding factor A
 gi|226090154|dbj|BAH38599.1| ribosome-binding factor A [Gemmatimonas aurantiaca T-27]
          Length = 146

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           RR  RV E +R  +   +       R+  R  ++++ V ++ DLR ATV++SL  D +  
Sbjct: 5   RRPDRVAEAIREEVATFLSEGAKDPRI--RAFVTVTAVEVTRDLRHATVFVSLMGDDADK 62

Query: 70  RVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +  +A L      +R ++G+SLR LR  PE+ FR D S+    ++  L+ 
Sbjct: 63  KSTTAGLASVASHLRSQLGKSLR-LRSAPEIHFRTDESVARASRIEHLLA 111


>gi|160880904|ref|YP_001559872.1| ribosome-binding factor A [Clostridium phytofermentans ISDg]
 gi|189039535|sp|A9KNW3|RBFA_CLOPH RecName: Full=Ribosome-binding factor A
 gi|160429570|gb|ABX43133.1| ribosome-binding factor A [Clostridium phytofermentans ISDg]
          Length = 136

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+ +EV+  L  +I + E +D  I+  + SI  V ++ DL+ A VYIS L  +
Sbjct: 3   KNSIKNTRINQEVQKELSMLI-SRELKDPRIN-PMTSIVAVEVAPDLKTAKVYISVLGDE 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
           +S    ++ L     F+RG++ R + NLR  PEL F  D S++
Sbjct: 61  LSQKNTLAGLKSAAPFLRGQLARGI-NLRNTPELLFVVDQSIE 102


>gi|296125371|ref|YP_003632623.1| ribosome-binding factor A [Brachyspira murdochii DSM 12563]
 gi|296017187|gb|ADG70424.1| ribosome-binding factor A [Brachyspira murdochii DSM 12563]
          Length = 122

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 8/102 (7%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R LRV E ++  L  +I+  E +D  I  ++++I++V  + DL+ A VY     +   
Sbjct: 3   SHRILRVNENIKQTLSLIIMR-EIEDPRIKNNLVTITKVDTAKDLKNAKVYFVCLNEDKK 61

Query: 69  DRVISALNCNIKFIRGRIGRSLR---NLRYVPELRFRYDTSL 107
           + V++ LN      +G I   LR    +RYVP L F YD +L
Sbjct: 62  NEVLNGLNS----AKGVIFSYLRKQLTIRYVPNLTFHYDKNL 99


>gi|291484220|dbj|BAI85295.1| ribosome-binding factor A [Bacillus subtilis subsp. natto BEST195]
          Length = 115

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           RA RVGE+++  L   I++ + +D  I    +++++V +S DL++A VYIS+  D    +
Sbjct: 2   RANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKKRE 58

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG  +R LR  PE+ F +D S+    ++  L+
Sbjct: 59  EALKGLAKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLI 105


>gi|317129160|ref|YP_004095442.1| ribosome-binding factor A [Bacillus cellulosilyticus DSM 2522]
 gi|315474108|gb|ADU30711.1| ribosome-binding factor A [Bacillus cellulosilyticus DSM 2522]
          Length = 116

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           RA RVGE+++  +  +I   E +D  +    I+++ V ++ DL+ AT +I++  D     
Sbjct: 5   RANRVGEQIKKEITEII-QREIKDPRVG--FITVTAVDVTGDLQQATAFITVYGDDDQRS 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             ++AL     FIR  IG+ ++ LR  P+L F++D S++   ++  L+
Sbjct: 62  NTLAALEKAKGFIRSEIGKRIQ-LRKTPDLSFKFDESIERGNRIEELL 108


>gi|33152522|ref|NP_873875.1| ribosome-binding factor A [Haemophilus ducreyi 35000HP]
 gi|38372437|sp|Q7VLI3|RBFA_HAEDU RecName: Full=Ribosome-binding factor A
 gi|33148745|gb|AAP96264.1| ribosome binding factor A [Haemophilus ducreyi 35000HP]
          Length = 126

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D   D
Sbjct: 6   KRSDRVAQELQKEI-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDQD 62

Query: 70  RVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +   +    K   +IR  +G+++R LR +PELRF YD SL    +++ L+ 
Sbjct: 63  IIAQGMKGLEKAGPYIRTLLGKAMR-LRILPELRFIYDQSLVEGMRMSNLVS 113


>gi|32033693|ref|ZP_00133988.1| COG0858: Ribosome-binding factor A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208122|ref|YP_001053347.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae L20]
 gi|165976052|ref|YP_001651645.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|190149950|ref|YP_001968475.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303249645|ref|ZP_07335850.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|303253710|ref|ZP_07339847.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307245496|ref|ZP_07527583.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307247610|ref|ZP_07529653.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307249839|ref|ZP_07531815.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|307252191|ref|ZP_07534089.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307254450|ref|ZP_07536287.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307256662|ref|ZP_07538441.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307258909|ref|ZP_07540640.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|307261097|ref|ZP_07542776.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|307263278|ref|ZP_07544896.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|166218414|sp|A3N006|RBFA_ACTP2 RecName: Full=Ribosome-binding factor A
 gi|238687490|sp|B0BNR6|RBFA_ACTPJ RecName: Full=Ribosome-binding factor A
 gi|238692383|sp|B3H164|RBFA_ACTP7 RecName: Full=Ribosome-binding factor A
 gi|126096914|gb|ABN73742.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|165876153|gb|ABY69201.1| ribosome binding factor A [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|189915081|gb|ACE61333.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302647435|gb|EFL77654.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302651457|gb|EFL81608.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306853555|gb|EFM85773.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306855880|gb|EFM88040.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306858141|gb|EFM90221.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306860335|gb|EFM92350.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306862591|gb|EFM94548.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306864710|gb|EFM96614.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306866933|gb|EFM98790.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306869229|gb|EFN01027.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306871340|gb|EFN03066.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 127

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP- 68
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D    
Sbjct: 6   KRSDRVAQELQKEI-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDQS 62

Query: 69  --DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             ++ +  L     +IR  +G+++R LR VPELRF YD SL    +++ L+ 
Sbjct: 63  VIEQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDQSLVEGMRMSNLVS 113


>gi|254361247|ref|ZP_04977390.1| ribosome binding factor A [Mannheimia haemolytica PHL213]
 gi|261492529|ref|ZP_05989082.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496804|ref|ZP_05993178.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153092743|gb|EDN73786.1| ribosome binding factor A [Mannheimia haemolytica PHL213]
 gi|261307551|gb|EEY08880.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311688|gb|EEY12838.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 126

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D   +
Sbjct: 6   KRSDRVAQELQKEV-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDAE 62

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +   +  L     +IR  +G+++R LR VPELRF YD SL    +++ L+ 
Sbjct: 63  AIKQGMQGLEKASPYIRTLLGKAMR-LRIVPELRFIYDESLVEGMRMSNLVS 113


>gi|307546726|ref|YP_003899205.1| ribosome-binding factor A [Halomonas elongata DSM 2581]
 gi|307218750|emb|CBV44020.1| ribosome-binding factor A [Halomonas elongata DSM 2581]
          Length = 139

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 66/111 (59%), Gaps = 7/111 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R  RV ++++  L  V++  E +D  +   ++++S V +S DL  A V+++L  +   +
Sbjct: 5   KRTDRVADQLQKEL-AVLIQREIKDPRLG--MVTVSGVEVSRDLGYADVHVTLLGEQDAE 61

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           R+   ++ L     F+R +I R ++ LR+VPELRF YD S+    +L++L+
Sbjct: 62  RIKENMAVLKRAAGFLRSQIARRIK-LRHVPELRFHYDESVVRGQRLSSLI 111


>gi|320355001|ref|YP_004196340.1| ribosome-binding factor A [Desulfobulbus propionicus DSM 2032]
 gi|320123503|gb|ADW19049.1| ribosome-binding factor A [Desulfobulbus propionicus DSM 2032]
          Length = 131

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
            S R  RV E +++ L  ++L      RL     + +S V ++ DL+ A VY ++P    
Sbjct: 14  ESSRPKRVAEAIKNELTILLLQQVADPRLSG---VLVSRVVVTPDLKQAKVYFTVPAGKD 70

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               +  ++    F R  + ++L NLRY PEL F YD   +   ++++L 
Sbjct: 71  SGPALKGMHRAKGFFRSHLAKTL-NLRYTPELLFYYDNLNEEAERIDSLF 119


>gi|297183949|gb|ADI20070.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L11F12]
          Length = 135

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 5/107 (4%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           K P  S+R LRVGE +R A+  V+L  +  D  +    +++ EV  + DL++A VY+ LP
Sbjct: 10  KGP--SQRQLRVGEMLRRAVSDVLLRGDIHDADLVHVSVTVGEVRSTPDLKLAIVYV-LP 66

Query: 64  L-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
           L   + + VI ALN N   IR  + + L +L+Y P+L+F  D +   
Sbjct: 67  LGGENANIVIDALNRNKYEIRRSVNK-LVSLKYSPDLKFVLDRTFDQ 112


>gi|281425967|ref|ZP_06256880.1| ribosome-binding factor A [Prevotella oris F0302]
 gi|299142405|ref|ZP_07035537.1| ribosome-binding factor A [Prevotella oris C735]
 gi|281399860|gb|EFB30691.1| ribosome-binding factor A [Prevotella oris F0302]
 gi|298576127|gb|EFI48001.1| ribosome-binding factor A [Prevotella oris C735]
          Length = 111

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   ++S++ V +S DL + T Y+S+      + ++  +  N+K IR  +GR + N
Sbjct: 24  QTRMMHGVMVSVTRVKISPDLSICTAYLSVFPSEKGEEIVRNVTANMKTIRYELGRRVHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYIERIDELL 109


>gi|325971222|ref|YP_004247413.1| ribosome-binding factor A [Spirochaeta sp. Buddy]
 gi|324026460|gb|ADY13219.1| Ribosome-binding factor A [Spirochaeta sp. Buddy]
          Length = 120

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRVI 72
           R+   +  A+  +I+  E ++ L+S  + S+S V +SVD   ATV+IS  L D S    +
Sbjct: 8   RIEARLSEAISTLIVKGEIKNPLLST-LCSVSRVELSVDNAFATVFISSVLDDDSLHASV 66

Query: 73  SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            AL     FI+ R+G  L+  R  P L F+ D SL+   K+NAL+
Sbjct: 67  DALQKASGFIQKRVGAFLKT-RNTPVLTFKADVSLKEGQKINALI 110


>gi|260771172|ref|ZP_05880099.1| ribosome-binding factor A [Vibrio furnissii CIP 102972]
 gi|260613769|gb|EEX38961.1| ribosome-binding factor A [Vibrio furnissii CIP 102972]
 gi|315179222|gb|ADT86136.1| ribosome-binding factor A [Vibrio furnissii NCTC 11218]
          Length = 131

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 6/115 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
           PK   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+ 
Sbjct: 59  GEQTPESCLNALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLVT 112


>gi|53715758|ref|YP_101750.1| ribosome-binding factor A [Bacteroides fragilis YCH46]
 gi|60683689|ref|YP_213833.1| putative ribosome-binding factor A [Bacteroides fragilis NCTC 9343]
 gi|253566429|ref|ZP_04843882.1| ribosome-binding factor A [Bacteroides sp. 3_2_5]
 gi|265767300|ref|ZP_06094966.1| ribosome-binding factor A [Bacteroides sp. 2_1_16]
 gi|52218623|dbj|BAD51216.1| ribosome-binding factor A [Bacteroides fragilis YCH46]
 gi|60495123|emb|CAH09944.1| putative ribosome-binding factor A [Bacteroides fragilis NCTC 9343]
 gi|251944601|gb|EES85076.1| ribosome-binding factor A [Bacteroides sp. 3_2_5]
 gi|263252605|gb|EEZ24117.1| ribosome-binding factor A [Bacteroides sp. 2_1_16]
 gi|301165202|emb|CBW24773.1| putative ribosome-binding factor A [Bacteroides fragilis 638R]
          Length = 110

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V +S D+ +A VY+S+      + ++  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LVSVSAVRISPDMSIARVYLSIFPSEKSEEMVKNINNNMKSIRFELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    K++AL+
Sbjct: 92  KFFVDDSLDYIEKIDALL 109


>gi|315924371|ref|ZP_07920593.1| ribosome-binding factor A [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622250|gb|EFV02209.1| ribosome-binding factor A [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 121

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 61/110 (55%), Gaps = 3/110 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           S R  ++  +++  L  +I+  + +D+ +  + +SI+ V  + DL+VATVYIS L  +  
Sbjct: 3   SHRKEKIDAQIQREL-SLIIRQKTKDKRLHNNTLSITGVKATPDLKVATVYISVLGSEED 61

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              V+ AL     F+R  +G+ ++    +PEL F+ D S+     ++A++
Sbjct: 62  AQGVMEALKKAKGFLRSSLGKIMKT-HMIPELHFKRDESVAYGMHIDAIL 110


>gi|90409002|ref|ZP_01217132.1| ribosome-binding factor A [Psychromonas sp. CNPT3]
 gi|90309887|gb|EAS38042.1| ribosome-binding factor A [Psychromonas sp. CNPT3]
          Length = 134

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
            K   R  RV ++V+  L   IL  E +D  I   ++++S V ++ DL  A V+++    
Sbjct: 2   AKEYSRTSRVSQQVQKELAR-ILQQEVKDPRIG--MVTVSGVDITRDLAYAKVFVTFLTI 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            D + D  +  LN    +IR  +G+++R LR VPE+RF +D +L    +L+ L+ 
Sbjct: 59  GDQTNDESLEGLNSAAGYIRRLLGKAMR-LRIVPEVRFCFDETLTEGLRLSELVS 112


>gi|291287259|ref|YP_003504075.1| ribosome-binding factor A [Denitrovibrio acetiphilus DSM 12809]
 gi|290884419|gb|ADD68119.1| ribosome-binding factor A [Denitrovibrio acetiphilus DSM 12809]
          Length = 110

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 4/107 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RVGE +RS +M VI+  E  D  I +DV+ ++++ ++ DL +A VY S     + + 
Sbjct: 2   RDRRVGELLRSEIMDVIIK-EVNDPKI-KDVV-LTKIDVTKDLSIAKVYFSTYNKSAKEG 58

Query: 71  VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +   LN +  FIR  I + LR L+ VP LRF YD S     K++ L+
Sbjct: 59  IERGLNRSAGFIRHCILKGLR-LKKVPTLRFIYDDSGDYGQKIDGLL 104


>gi|327312746|ref|YP_004328183.1| ribosome-binding factor A [Prevotella denticola F0289]
 gi|326944148|gb|AEA20033.1| ribosome-binding factor A [Prevotella denticola F0289]
          Length = 111

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   ++S++ V +S DL + T Y+S+      D ++  +N N K IR  +G+ + N
Sbjct: 24  QTRMMHGVLVSVTRVKVSPDLSICTAYLSIFPSEKGDELLKNINANEKTIRYDLGQRVHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYIERIDELL 109


>gi|240949212|ref|ZP_04753556.1| ribosome-binding factor A [Actinobacillus minor NM305]
 gi|240296328|gb|EER46972.1| ribosome-binding factor A [Actinobacillus minor NM305]
          Length = 126

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ RV +E++  +  +IL  E +D  I   ++++S+V +S DL  A ++++   D   +
Sbjct: 6   KRSDRVAQELQKEV-AIILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDQE 62

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +   +  L     +IR  +G+++R LR VPELRF YD SL    +++ L+ 
Sbjct: 63  AIKQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDESLVEGMRMSNLVS 113


>gi|223042080|ref|ZP_03612256.1| ribosome-binding factor A [Actinobacillus minor 202]
 gi|223017155|gb|EEF15591.1| ribosome-binding factor A [Actinobacillus minor 202]
          Length = 126

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ RV +E++  +  +IL  E +D  I   ++++S+V +S DL  A ++++   D   +
Sbjct: 6   KRSDRVAQELQKEV-AIILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDQE 62

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +   +  L     +IR  +G+++R LR VPELRF YD SL    +++ L+ 
Sbjct: 63  AIKQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDESLVEGMRMSNLVS 113


>gi|255011427|ref|ZP_05283553.1| putative ribosome-binding factor A [Bacteroides fragilis 3_1_12]
 gi|313149243|ref|ZP_07811436.1| ribosome-binding factor A [Bacteroides fragilis 3_1_12]
 gi|313138010|gb|EFR55370.1| ribosome-binding factor A [Bacteroides fragilis 3_1_12]
          Length = 110

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 41  VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPE 98
           ++S+S V +S D+ +A VY+S  P D S + ++  +N N+K IR  +G  +R+ LR +PE
Sbjct: 32  LVSVSAVRISPDMSIARVYLSVFPSDKS-EEMVKNINNNMKSIRFELGTRVRHQLRIIPE 90

Query: 99  LRFRYDTSLQSYWKLNALM 117
           L+F  D SL    K++AL+
Sbjct: 91  LKFFVDDSLDYIEKIDALL 109


>gi|262163942|ref|ZP_06031681.1| ribosome-binding factor A [Vibrio mimicus VM223]
 gi|262027470|gb|EEY46136.1| ribosome-binding factor A [Vibrio mimicus VM223]
          Length = 132

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
           PK   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 59  GEQTPESCLAALREHEVHIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111


>gi|113460965|ref|YP_719032.1| ribosome-binding factor A [Haemophilus somnus 129PT]
 gi|170717522|ref|YP_001784613.1| ribosome-binding factor A [Haemophilus somnus 2336]
 gi|123327302|sp|Q0I3P4|RBFA_HAES1 RecName: Full=Ribosome-binding factor A
 gi|189039544|sp|B0UU14|RBFA_HAES2 RecName: Full=Ribosome-binding factor A
 gi|112823008|gb|ABI25097.1| ribosome-binding factor A [Haemophilus somnus 129PT]
 gi|168825651|gb|ACA31022.1| ribosome-binding factor A [Haemophilus somnus 2336]
          Length = 126

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP- 68
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A ++++   D    
Sbjct: 6   KRSDRVAQEIQKEV-AVILQREVKDPRIG--MVTVSDVEISSDLAYAKIFVTFLFDQDEN 62

Query: 69  --DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             ++ +  L     +IR  +G+ +R LR VPELRF YD SL    +++ L+ 
Sbjct: 63  VIEQGMKGLEKASPYIRSLLGKVMR-LRIVPELRFIYDQSLVDGMRMSNLVT 113


>gi|258620314|ref|ZP_05715352.1| ribosome-binding factor A [Vibrio mimicus VM573]
 gi|262172280|ref|ZP_06039958.1| ribosome-binding factor A [Vibrio mimicus MB-451]
 gi|258587193|gb|EEW11904.1| ribosome-binding factor A [Vibrio mimicus VM573]
 gi|261893356|gb|EEY39342.1| ribosome-binding factor A [Vibrio mimicus MB-451]
          Length = 132

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
           PK   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 59  GEQTPESCLAALREHEVHIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111


>gi|16800432|ref|NP_470700.1| ribosome-binding factor A [Listeria innocua Clip11262]
 gi|20978611|sp|Q92C27|RBFA_LISIN RecName: Full=Ribosome-binding factor A
 gi|16413837|emb|CAC96595.1| rbfA [Listeria innocua Clip11262]
          Length = 114

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RV E+++  L   ILN + +D  +    ++++ V ++ DL+ A V+IS L  D   +
Sbjct: 4   RANRVSEQMKKEL-GDILNRKIKDPRLG--FVTVTGVDVTGDLQEAKVFISILGTDKEKE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL     FIR  IGR +R LR VPE+ F  D S+    +++ L+
Sbjct: 61  NTLLALEKAHGFIRSEIGRRIR-LRKVPEMSFEIDNSIAYGNRIDELL 107


>gi|152972091|ref|YP_001337237.1| ribosome-binding factor A [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|206575945|ref|YP_002236422.1| ribosome-binding factor A [Klebsiella pneumoniae 342]
 gi|238896674|ref|YP_002921419.1| ribosome-binding factor A [Klebsiella pneumoniae NTUH-K2044]
 gi|262042725|ref|ZP_06015879.1| ribosome-binding factor A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288933405|ref|YP_003437464.1| ribosome-binding factor A [Klebsiella variicola At-22]
 gi|290511544|ref|ZP_06550913.1| ribosome-binding factor A [Klebsiella sp. 1_1_55]
 gi|329997776|ref|ZP_08302915.1| ribosome-binding factor A [Klebsiella sp. MS 92-3]
 gi|166218444|sp|A6TEI6|RBFA_KLEP7 RecName: Full=Ribosome-binding factor A
 gi|226723604|sp|B5XSX5|RBFA_KLEP3 RecName: Full=Ribosome-binding factor A
 gi|150956940|gb|ABR78970.1| ribosome-binding factor A [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|206565003|gb|ACI06779.1| ribosome-binding factor A [Klebsiella pneumoniae 342]
 gi|238549001|dbj|BAH65352.1| ribosome-binding factor A [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039950|gb|EEW41067.1| ribosome-binding factor A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888134|gb|ADC56452.1| ribosome-binding factor A [Klebsiella variicola At-22]
 gi|289776537|gb|EFD84536.1| ribosome-binding factor A [Klebsiella sp. 1_1_55]
 gi|328538910|gb|EGF64971.1| ribosome-binding factor A [Klebsiella sp. MS 92-3]
          Length = 133

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A VY++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|302392346|ref|YP_003828166.1| ribosome-binding factor A [Acetohalobium arabaticum DSM 5501]
 gi|302204423|gb|ADL13101.1| ribosome-binding factor A [Acetohalobium arabaticum DSM 5501]
          Length = 122

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RV E ++  +   +L  E +D  I    ++I++V +S DLR A V++S L  + + +
Sbjct: 5   RPRRVAELIKKEVSQ-MLQQEIKDPRIG--FVTITDVEVSEDLRHAKVFVSVLDAEETKE 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             +  L   + +IR  +G+ +R LR+ PE+ FRYD S++
Sbjct: 62  ETMEGLENAVGYIRRELGQRIR-LRHTPEILFRYDDSIK 99


>gi|325479406|gb|EGC82502.1| ribosome-binding factor A [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 128

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 2/111 (1%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
           N RR  R+  EV+  L  ++ ++    RL    ++SI++V ++ DL  A  Y+S+  D  
Sbjct: 2   NKRRTERISSEVKKELSKILRDDLNDPRLSMEAMVSITDVEVTNDLSYADCYVSVLGDSH 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + + V+ AL+    +I+  IG  +R LR +PE RF+ D S++    ++ L+
Sbjct: 62  NKEDVLEALDQAKGYIKILIGERMR-LRSMPEFRFKLDESIERGAYMDKLI 111


>gi|150024347|ref|YP_001295173.1| ribosome-binding factor A [Flavobacterium psychrophilum JIP02/86]
 gi|172048600|sp|A6GW80|RBFA_FLAPJ RecName: Full=Ribosome-binding factor A
 gi|149770888|emb|CAL42353.1| Ribosome-binding factor A [Flavobacterium psychrophilum JIP02/86]
          Length = 130

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 4/118 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
           + R  ++G  ++  L+  IL  E +   IS  VIS+S+V ++ DL VA VY+S+ P + +
Sbjct: 3   TNRQKKIGGVIQKDLVD-ILQGEIRKNGISNLVISVSKVSVTTDLGVARVYLSVFPQEKA 61

Query: 68  PDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
           P+ ++ ++  N+  I+  + + +R  LR VP L F  D SL    K++  +   + P+
Sbjct: 62  PE-ILESIKSNMYLIKHDLSQRVRLQLRKVPNLAFYIDDSLDYIEKIDNALAGKENPI 118


>gi|282881986|ref|ZP_06290627.1| ribosome-binding factor A [Peptoniphilus lacrimalis 315-B]
 gi|300813721|ref|ZP_07094041.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|281298016|gb|EFA90471.1| ribosome-binding factor A [Peptoniphilus lacrimalis 315-B]
 gi|300512178|gb|EFK39358.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 118

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
           +++R  ++ EEV+  LM ++  N+ +D  I   + SIS V ++ DL  A VY+S+   D+
Sbjct: 2   DNKRINKISEEVKRCLMDIV-QNKIKDPRIPT-LTSISHVEVTRDLSFAKVYVSIFADDI 59

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              + +  L     FI+  + R ++ LR +PEL F  D S++   K++ L+
Sbjct: 60  KKQKALQGLESAKGFIKKELAREVK-LRVMPELIFINDDSIEKGLKMDKLI 109


>gi|307564965|ref|ZP_07627482.1| ribosome-binding factor A [Prevotella amnii CRIS 21A-A]
 gi|307346278|gb|EFN91598.1| ribosome-binding factor A [Prevotella amnii CRIS 21A-A]
          Length = 113

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q RL+   ++S++ V +S DL + T Y+S+      + +I  +N N K IR  +G+   N
Sbjct: 24  QTRLLHGVLVSVTRVRISPDLSICTAYLSIFPSEKTEELIKNINTNEKTIRYELGKRTHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL     +  L+
Sbjct: 84  QLRIIPELRFFVDDSLDYLEHIEHLL 109


>gi|157825722|ref|YP_001493442.1| ribosome-binding factor A [Rickettsia akari str. Hartford]
 gi|166219399|sp|A8GNF9|RBFA_RICAH RecName: Full=Ribosome-binding factor A
 gi|157799680|gb|ABV74934.1| ribosome-binding factor A [Rickettsia akari str. Hartford]
          Length = 129

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     NS R  ++   +  AL+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 1   MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFNCPLTITKVIVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ + V++ALN + K IR  I   + N+++ P++RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTINEVMNALNNSKKAIRNFITNKI-NVKFSPDIRFHYDHGFDNAIKVEELL 117


>gi|87119790|ref|ZP_01075687.1| Ribosome-binding factor A [Marinomonas sp. MED121]
 gi|86165266|gb|EAQ66534.1| Ribosome-binding factor A [Marinomonas sp. MED121]
          Length = 130

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 66/111 (59%), Gaps = 8/111 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  R+G++++  L  +I   +F+ +     +++I+EV ++ DL  A VY + L +D  P+
Sbjct: 7   RTSRIGDQLQKELASII---QFEVKDPRLGIVTINEVRVAKDLGYADVYYTVLGMDDKPE 63

Query: 70  RVI---SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           ++    +AL+    F+R R  + ++ LR +P LRF YD S+ +  K++AL+
Sbjct: 64  KLAENQTALDSASNFLRRRASQEIK-LRVMPLLRFHYDDSVVNGAKMSALI 113


>gi|304320571|ref|YP_003854214.1| ribosome-binding factor A [Parvularcula bermudensis HTCC2503]
 gi|303299473|gb|ADM09072.1| ribosome-binding factor A [Parvularcula bermudensis HTCC2503]
          Length = 106

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 19  VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNC 77
           +R AL  +    E  +       ++I+EV +S DL+ ATV+ S L  DV  D  ++ LN 
Sbjct: 2   IRHALAEMFQREEIHEEAFPTTPVTITEVRVSPDLKSATVFCSALGKDVF-DEEVAQLNA 60

Query: 78  NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               IR  +GR +  ++Y P L+F  D + +   ++NAL+
Sbjct: 61  ISGAIRQVLGRKI-TMKYTPSLKFLPDETFEEAARINALL 99


>gi|261407935|ref|YP_003244176.1| ribosome-binding factor A [Paenibacillus sp. Y412MC10]
 gi|329929300|ref|ZP_08283053.1| ribosome-binding factor A [Paenibacillus sp. HGF5]
 gi|261284398|gb|ACX66369.1| ribosome-binding factor A [Paenibacillus sp. Y412MC10]
 gi|328936669|gb|EGG33112.1| ribosome-binding factor A [Paenibacillus sp. HGF5]
          Length = 117

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RVGE+++  L  +I   E +D  I    I+++ V ++ DL  A VY+S L  D    
Sbjct: 5   RTGRVGEQIKKELSQLI-QTELKDPRIG--FITVTGVDVTNDLSQAKVYLSVLGDDEQKA 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             +  L     F+R  +G+ +R LR+VPEL F++D S+     +  L+ 
Sbjct: 62  ASLKGLEKASGFLRSELGKRIR-LRHVPELIFKFDDSIAYGSHIEKLLT 109


>gi|83644102|ref|YP_432537.1| ribosome-binding factor A [Hahella chejuensis KCTC 2396]
 gi|123534477|sp|Q2SML2|RBFA_HAHCH RecName: Full=Ribosome-binding factor A
 gi|83632145|gb|ABC28112.1| ribosome-binding factor A [Hahella chejuensis KCTC 2396]
          Length = 135

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 11/111 (9%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL-DVSPDRV 71
           RV E+++  L  +I   E +D  +   +++++ V +S DL  A VY++ L L DV  D  
Sbjct: 10  RVAEQIQKELAQLI-QRELKDPRLG--MVTVNSVKVSKDLSYADVYVTVLNLKDVEDDGD 66

Query: 72  IS-----ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            S      L     F+R  +GR+++ LR +P+LRF YD S+ +  +L AL+
Sbjct: 67  ASKASLKVLESAAGFLRSELGRAIK-LRVMPQLRFHYDASVSNAQRLGALI 116


>gi|161551797|ref|YP_147118.2| ribosome-binding factor A [Geobacillus kaustophilus HTA426]
 gi|61214671|sp|Q5L0I6|RBFA_GEOKA RecName: Full=Ribosome-binding factor A
          Length = 127

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L  +I +   +D  I    +++++V ++ DL+ A VYIS L  D   +
Sbjct: 4   RATRVGEQMKKELSDII-SRRLKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDDKQRE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL     FIR  IG+ +R LR  PE+ F  D +++   ++  L+
Sbjct: 61  NTLKALEKAKGFIRSEIGQRIR-LRKTPEIFFEIDETMEYGSRIEQLI 107


>gi|256830183|ref|YP_003158911.1| ribosome-binding factor A [Desulfomicrobium baculatum DSM 4028]
 gi|256579359|gb|ACU90495.1| ribosome-binding factor A [Desulfomicrobium baculatum DSM 4028]
          Length = 114

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV-YISLPLDV 66
           NSRRA+++G+++   L  +++  E +D  ++  +++I+ V ++ D  +A V Y  L    
Sbjct: 5   NSRRAIQMGDQIMQVLASLLIQ-EVEDPTLA--LVTITGVRLNRDFSIAEVLYTHLRGRA 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
           +   +  AL     F+R R+ + L NLR +P+LRF++DT L+
Sbjct: 62  AEPEITKALYHAKGFLRSRLSKEL-NLRGIPDLRFQWDTFLE 102


>gi|310828064|ref|YP_003960421.1| hypothetical protein ELI_2476 [Eubacterium limosum KIST612]
 gi|308739798|gb|ADO37458.1| hypothetical protein ELI_2476 [Eubacterium limosum KIST612]
          Length = 130

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 54/96 (56%), Gaps = 2/96 (2%)

Query: 24  MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFI 82
           + +I+  + +D   +RD +SI+ V  + DL+ ATVY+S+       + V+  L+    F+
Sbjct: 17  LSLIIQQKMKDSRFNRDTLSITHVKAAPDLKTATVYVSIFGTSEEKEEVLGLLDNAKGFL 76

Query: 83  RGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           R  +G+ L+ +  +P L F+ D S++    +++++ 
Sbjct: 77  RANLGKVLK-VHSIPALTFKLDDSVEYGMHIDSILA 111


>gi|309791822|ref|ZP_07686309.1| ribosome-binding factor A [Oscillochloris trichoides DG6]
 gi|308226144|gb|EFO79885.1| ribosome-binding factor A [Oscillochloris trichoides DG6]
          Length = 143

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           P + +R  ++G+ ++  L  VI  +E +D  +     +++ V +S DL+ ATV IS+  D
Sbjct: 17  PMSKQRLQQIGDRIQQVLGAVI-QSEIKDPRVG--FATVTGVEVSADLQHATVRISIMGD 73

Query: 66  VSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
                  ++ L     F+R R+   LR++R+VPEL    DTSL
Sbjct: 74  AEEQAATMAGLQRARSFLRRRVADELRHMRFVPELHLVQDTSL 116


>gi|167037620|ref|YP_001665198.1| ribosome-binding factor A [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|289578385|ref|YP_003477012.1| ribosome-binding factor A [Thermoanaerobacter italicus Ab9]
 gi|297544661|ref|YP_003676963.1| ribosome-binding factor A [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|320116035|ref|YP_004186194.1| ribosome-binding factor A [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856454|gb|ABY94862.1| ribosome-binding factor A [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|289528098|gb|ADD02450.1| ribosome-binding factor A [Thermoanaerobacter italicus Ab9]
 gi|296842436|gb|ADH60952.1| ribosome-binding factor A [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|319929126|gb|ADV79811.1| ribosome-binding factor A [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 119

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 4/96 (4%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VI 72
           R+ EE++  +  +IL  E +D  I + ++SI+++ ++ DLR A VY+S+  +    R   
Sbjct: 7   RLSEEIKKEISKMILE-EIKDPRI-KAMVSITDIELTKDLRYAKVYVSIYGNEEDKRETF 64

Query: 73  SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             L     +IR  IGR ++ +RY PE+ F  D S++
Sbjct: 65  EGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDHSIE 99


>gi|306820440|ref|ZP_07454076.1| ribosome-binding factor A [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551515|gb|EFM39470.1| ribosome-binding factor A [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 131

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLI--SRDVISISEVCMSVDLRVATVYISLPLDVS 67
            R  R+GEE++  +  +++    ++ ++  +  +IS+  V +  DL+ A VYIS+ L   
Sbjct: 4   ERTQRIGEEIKKTITKMLIEGHIKNTVLLNTHSLISVVSVDVVRDLKYAYVYISV-LGQG 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            + +I++L  +  FIR  +GR    LRY PEL F  D S++     N +  + KI
Sbjct: 63  QEEIIASLQKSAGFIRKEVGR-FTKLRYTPELIFLEDNSIK-----NGVEMISKI 111


>gi|253581493|ref|ZP_04858718.1| ribosome-binding factor A [Fusobacterium varium ATCC 27725]
 gi|251836563|gb|EES65098.1| ribosome-binding factor A [Fusobacterium varium ATCC 27725]
          Length = 115

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 39  RDVISISEVCMSVDLRVATVYISL--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYV 96
           + ++S++ V ++ DL+ A V+ S+    +++ D V+  LN    F+R R+   +  +RY+
Sbjct: 31  KGIVSVTSVHVTEDLKFADVFFSIMGQENINTDEVLEGLNQIKGFLRKRVAEEI-EIRYI 89

Query: 97  PELRFRYDTSLQSYWKLNALM 117
           PE+R + D S++   K++ L+
Sbjct: 90  PEIRVKIDDSIEHAVKISKLL 110


>gi|224537525|ref|ZP_03678064.1| hypothetical protein BACCELL_02404 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520838|gb|EEF89943.1| hypothetical protein BACCELL_02404 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 110

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S V +S DL VA  Y+S+      + +I  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LISVSAVRISPDLSVARAYLSIFPSEKAEEIIKNVNDNMKSIRYELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    K++ L+
Sbjct: 92  KFFVDDSLDYLEKIDELL 109


>gi|218131518|ref|ZP_03460322.1| hypothetical protein BACEGG_03137 [Bacteroides eggerthii DSM 20697]
 gi|317476473|ref|ZP_07935722.1| ribosome-binding factor A [Bacteroides eggerthii 1_2_48FAA]
 gi|217986450|gb|EEC52787.1| hypothetical protein BACEGG_03137 [Bacteroides eggerthii DSM 20697]
 gi|316907499|gb|EFV29204.1| ribosome-binding factor A [Bacteroides eggerthii 1_2_48FAA]
          Length = 110

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 32  FQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR 91
            Q + +S  +IS+S V +S D+ VA  Y+S+      + +I  +N N+K IR  +G  +R
Sbjct: 23  LQTKSMSGILISVSAVRISPDMSVARAYLSVFPSEKSEEIIKNINANMKSIRFELGTRVR 82

Query: 92  N-LRYVPELRFRYDTSLQSYWKLNALM 117
           + LR +PEL+F  D SL    +++ L+
Sbjct: 83  HQLRIIPELKFFVDDSLDYLERIDELL 109


>gi|300721539|ref|YP_003710814.1| ribosome-binding factor, role in processing of 10S rRNA
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628031|emb|CBJ88580.1| ribosome-binding factor, role in processing of 10S rRNA
           [Xenorhabdus nematophila ATCC 19061]
          Length = 136

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 13/116 (11%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
           R  RV +E++  +  +IL  E +D  I   + ++S V +S DL  A V+++  L+V    
Sbjct: 7   RTQRVAQEMQKEI-AIILQREIKDPRIG--MATVSGVEVSRDLAYAKVFVTF-LNVLVEG 62

Query: 67  -SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              D+V   I ALN    FIR  +G+++R LR VPEL F YD+SL    +++ L+ 
Sbjct: 63  HDSDQVKEGIKALNDASGFIRSLLGKAMR-LRIVPELTFSYDSSLVEGMRMSNLVS 117


>gi|297744711|emb|CBI37973.3| unnamed protein product [Vitis vinifera]
          Length = 146

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 34  DRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRN 92
           DR +S  + +IS+V +S DL+V  VY+S+  D     V I+ L    K++R  +GR ++ 
Sbjct: 21  DRYLS-SLTTISDVEVSADLQVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMK- 78

Query: 93  LRYVPELRFRYDTSLQSYWKLNALM 117
           LR  PE+RF  D SL+   ++ A++
Sbjct: 79  LRLTPEIRFVEDESLERGSRVIAIL 103


>gi|115372769|ref|ZP_01460075.1| ribosome-binding factor A [Stigmatella aurantiaca DW4/3-1]
 gi|310823418|ref|YP_003955776.1| ribosome-binding factor a [Stigmatella aurantiaca DW4/3-1]
 gi|3914548|sp|O05340|RBFA_STIAU RecName: Full=Ribosome-binding factor A
 gi|1934985|emb|CAA61164.1| ribosome binding factor A [Stigmatella aurantiaca]
 gi|115370250|gb|EAU69179.1| ribosome-binding factor A [Stigmatella aurantiaca DW4/3-1]
 gi|309396490|gb|ADO73949.1| Ribosome-binding factor A [Stigmatella aurantiaca DW4/3-1]
          Length = 119

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 62/109 (56%), Gaps = 6/109 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RVG+E+++A+  ++   E +D  I    I+I+ V +S DLRVA V+ S+ +  + +R
Sbjct: 6   RPERVGQEIQAAIGQLLTRGELRDPRIG--FITITGVKVSPDLRVAQVFYSM-MGTAQER 62

Query: 71  VIS--ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +   L+    F+R  +  ++ NLR  PE+ F +D S+    K++ L+
Sbjct: 63  AETQKGLDAAKGFVRREVTAAV-NLRVSPEVFFTFDESVGEGDKIDRLL 110


>gi|258511416|ref|YP_003184850.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478142|gb|ACV58461.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 118

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           RA +V E+++  L   IL +E +D  I    ++I+ V +S DL+ A +Y+S+   +   +
Sbjct: 5   RAQKVAEQMKKELAD-ILQHELKDPRIG--FVTITRVEVSGDLQHAKIYVSVYGPEAEKE 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
             +  L     FIRG I R L ++R  PEL FR D S
Sbjct: 62  ATLGVLTKAAGFIRGEIARRL-HMRMAPELVFRLDES 97


>gi|261419465|ref|YP_003253147.1| ribosome-binding factor A [Geobacillus sp. Y412MC61]
 gi|297530560|ref|YP_003671835.1| ribosome-binding factor A [Geobacillus sp. C56-T3]
 gi|319766280|ref|YP_004131781.1| ribosome-binding factor A [Geobacillus sp. Y412MC52]
 gi|261375922|gb|ACX78665.1| ribosome-binding factor A [Geobacillus sp. Y412MC61]
 gi|297253812|gb|ADI27258.1| ribosome-binding factor A [Geobacillus sp. C56-T3]
 gi|317111146|gb|ADU93638.1| ribosome-binding factor A [Geobacillus sp. Y412MC52]
          Length = 127

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L  +I +   +D  I    +++++V ++ DL+ A VYIS L  D   +
Sbjct: 4   RATRVGEQMKKELSDII-SRRLKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDDKQRE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL     FIR  IG+ +R LR  PE+ F  D +++   ++  L+
Sbjct: 61  NTLKALEKAKGFIRSEIGQRIR-LRKTPEIFFEIDETIEYGSRIEQLI 107


>gi|167630360|ref|YP_001680859.1| ribosome-binding factor a [Heliobacterium modesticaldum Ice1]
 gi|238687990|sp|B0THR5|RBFA_HELMI RecName: Full=Ribosome-binding factor A
 gi|167593100|gb|ABZ84848.1| ribosome-binding factor a [Heliobacterium modesticaldum Ice1]
          Length = 121

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
             R  R+ EE++  L   +L +E +D  +    +SI+ V +S D R A VY+S+  D S 
Sbjct: 3   GHRMARMAEEIKRELAR-LLRDEMKDPRLG--FVSITAVEVSGDGRHAKVYVSVMGDESA 59

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            D   +AL     F+R  + +SLR +RYVPEL F  D S++   ++  L+ 
Sbjct: 60  RDNSQAALKQATGFLRTELSKSLR-VRYVPELVFLSDLSIERGTRIARLLT 109


>gi|325860163|ref|ZP_08173288.1| ribosome-binding factor A [Prevotella denticola CRIS 18C-A]
 gi|327312736|ref|YP_004328173.1| ribosome-binding factor A [Prevotella denticola F0289]
 gi|325482250|gb|EGC85258.1| ribosome-binding factor A [Prevotella denticola CRIS 18C-A]
 gi|326944166|gb|AEA20051.1| ribosome-binding factor A [Prevotella denticola F0289]
          Length = 111

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   ++S++ V +S DL V T Y+S+      + ++  +N N K IR  +G+ + N
Sbjct: 24  QTRMMHGVLVSVTRVKISPDLSVCTAYLSIFPSEKGEELLKNINANEKTIRYELGQRVHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYLDRIDELL 109


>gi|34762751|ref|ZP_00143740.1| Ribosome-binding factor A [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|237742961|ref|ZP_04573442.1| ribosome-binding factor A [Fusobacterium sp. 4_1_13]
 gi|256846933|ref|ZP_05552387.1| ribosome-binding factor A [Fusobacterium sp. 3_1_36A2]
 gi|294784274|ref|ZP_06749569.1| ribosome-binding factor A [Fusobacterium sp. 3_1_27]
 gi|27887601|gb|EAA24681.1| Ribosome-binding factor A [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|229430609|gb|EEO40821.1| ribosome-binding factor A [Fusobacterium sp. 4_1_13]
 gi|256717731|gb|EEU31290.1| ribosome-binding factor A [Fusobacterium sp. 3_1_36A2]
 gi|294488140|gb|EFG35491.1| ribosome-binding factor A [Fusobacterium sp. 3_1_27]
          Length = 120

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 10/115 (8%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLD-- 65
           +R   +G+E+   +  VIL      ++  + ++S++EV ++ DL+ A  Y S+  PL+  
Sbjct: 4   QRLEGIGKEIMRVISKVILEEVKNPKI--KGLVSVTEVDVTEDLKFADTYFSILPPLNSD 61

Query: 66  ---VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                 + ++ ALN    F+R R+   + ++RY PE+R + D S+++  K+  L+
Sbjct: 62  EKQYDSEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAMKITKLL 115


>gi|313892629|ref|ZP_07826216.1| ribosome-binding factor A [Dialister microaerophilus UPII 345-E]
 gi|329121251|ref|ZP_08249878.1| ribosome-binding factor A [Dialister micraerophilus DSM 19965]
 gi|313119026|gb|EFR42231.1| ribosome-binding factor A [Dialister microaerophilus UPII 345-E]
 gi|327470185|gb|EGF15648.1| ribosome-binding factor A [Dialister micraerophilus DSM 19965]
          Length = 117

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R  ++ E ++  +  ++LN     RL      ++++V ++ DLR ATVY+SL   +    
Sbjct: 5   RVRKIQEFIKQEVGKLLLNGIKDPRL---GFTTVTDVKVTGDLREATVYVSLFGSEKEKK 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             ++ LN    FIR  +G+SL N+ Y PE+ F  D SL+   K+  L+
Sbjct: 62  DSLNVLNKAKGFIRKEVGKSL-NIFYSPEISFEEDKSLEYGMKIEKLL 108


>gi|327404009|ref|YP_004344847.1| ribosome-binding factor A [Fluviicola taffensis DSM 16823]
 gi|327319517|gb|AEA44009.1| ribosome-binding factor A [Fluviicola taffensis DSM 16823]
          Length = 111

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 44/77 (57%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           ++S++ V ++ DL +A +Y+S+ +      V+  +  N K IRG +G  L+N+  +PEL 
Sbjct: 33  MVSVTIVRVTSDLSLARIYLSVFMGPDKQEVLKNIQVNSKKIRGEVGNRLKNMHKIPELL 92

Query: 101 FRYDTSLQSYWKLNALM 117
           F  D SL     +N L+
Sbjct: 93  FYIDDSLDYAETINKLL 109


>gi|29348248|ref|NP_811751.1| ribosome-binding factor A [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569386|ref|ZP_04846796.1| ribosome-binding factor A [Bacteroides sp. 1_1_6]
 gi|298386059|ref|ZP_06995616.1| ribosome-binding factor A [Bacteroides sp. 1_1_14]
 gi|29340151|gb|AAO77945.1| ribosome-binding factor A [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841405|gb|EES69486.1| ribosome-binding factor A [Bacteroides sp. 1_1_6]
 gi|298261287|gb|EFI04154.1| ribosome-binding factor A [Bacteroides sp. 1_1_14]
          Length = 110

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S V +S D+ +A VY+S+      + ++  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LISVSAVRISPDMSIARVYLSVFPSEKAEEMVKNINENMKSIRFELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    K+++L+
Sbjct: 92  KFFVDDSLDYIEKIDSLL 109


>gi|300087634|ref|YP_003758156.1| ribosome-binding factor A [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527367|gb|ADJ25835.1| ribosome-binding factor A [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 120

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 9/112 (8%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           S R  ++ + +R  L  V +  E +D RL   +++SI+ V  + DL++A V++S  L  S
Sbjct: 2   SHRIEKINQLIREELSQV-MQREIRDPRL---ELLSINAVETTADLKLAKVFVS-HLSSS 56

Query: 68  PDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +R  ++ AL     + RG +G+ L  LRYVPEL F +D S++   +++ L+
Sbjct: 57  ENRPEIMKALGGATGYFRGELGKVL-TLRYVPELAFYWDDSIERGARMDRLI 107


>gi|270308252|ref|YP_003330310.1| ribosome-binding factor A [Dehalococcoides sp. VS]
 gi|270154144|gb|ACZ61982.1| ribosome-binding factor A [Dehalococcoides sp. VS]
          Length = 118

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 41  VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++S++EV +S D+R A VY+S L  +   D +++ALN    F R  I +   ++RY+P  
Sbjct: 32  LLSVNEVDISEDMRHANVYVSHLSGNEHKDEILAALNTAAGFFRTEIAKKT-DIRYMPVF 90

Query: 100 RFRYDTSLQSYWKLNALM 117
            F +D +++   +LN L+
Sbjct: 91  HFVWDDTIERGVRLNTLI 108


>gi|228998587|ref|ZP_04158174.1| Ribosome-binding factor A [Bacillus mycoides Rock3-17]
 gi|229006087|ref|ZP_04163775.1| Ribosome-binding factor A [Bacillus mycoides Rock1-4]
 gi|228755163|gb|EEM04520.1| Ribosome-binding factor A [Bacillus mycoides Rock1-4]
 gi|228761055|gb|EEM10014.1| Ribosome-binding factor A [Bacillus mycoides Rock3-17]
          Length = 111

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 5/104 (4%)

Query: 15  VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVIS 73
           +GE+++  L  +I + + +D  I    +++++V +S DL++A VYIS L  +   +  + 
Sbjct: 1   MGEQMKKELGEII-SRKIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEQQKENTLK 57

Query: 74  ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            L     FIR  IG+ +R LR  PE+ F +D S+    +++ L+
Sbjct: 58  GLAKAKGFIRAEIGQRIR-LRKTPEITFEFDESIAYGHRIDTLL 100


>gi|197121575|ref|YP_002133526.1| ribosome-binding factor A [Anaeromyxobacter sp. K]
 gi|238689882|sp|B4UHG2|RBFA_ANASK RecName: Full=Ribosome-binding factor A
 gi|196171424|gb|ACG72397.1| ribosome-binding factor A [Anaeromyxobacter sp. K]
          Length = 138

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
           R  RV EE R  L   IL    +D  I+   ++++   MS DL+ ATVY+S+  D  V  
Sbjct: 6   RPARVAEEFRHEL-SAILARGLKDPRIT-GFVTVTGSKMSPDLKEATVYVSIHGDERVRK 63

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D   + L     F++  + R+LR LR  P LRF YD S+    ++  L+
Sbjct: 64  D-TFAGLQAAAGFLQREVSRALR-LRNTPHLRFVYDESVARGDRIERLL 110


>gi|220916338|ref|YP_002491642.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254789727|sp|B8JFY8|RBFA_ANAD2 RecName: Full=Ribosome-binding factor A
 gi|219954192|gb|ACL64576.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 139

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
           R  RV EE R  L   IL    +D  I+   ++++   MS DL+ ATVY+S+  D  V  
Sbjct: 6   RPARVAEEFRHEL-SAILARGLKDPRIT-GFVTVTGSKMSPDLKEATVYVSIHGDERVRK 63

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D   + L     F++  + R+LR LR  P LRF YD S+    ++  L+
Sbjct: 64  D-TFAGLQAAAGFLQREVSRALR-LRNTPHLRFVYDESVARGDRIERLL 110


>gi|315648093|ref|ZP_07901194.1| ribosome-binding factor A [Paenibacillus vortex V453]
 gi|315276739|gb|EFU40082.1| ribosome-binding factor A [Paenibacillus vortex V453]
          Length = 117

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RVGE+++  L  +I   E +D  I    I+++ V ++ DL  A +Y+S L  D    
Sbjct: 5   RTGRVGEQIKKELSQLI-QTEMKDPRIG--FITVTGVDVTNDLSQAKIYLSVLGDDEQKA 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             +  L     F+R  +G+ +R LR+VPEL F++D S+     +  L+ 
Sbjct: 62  ASLKGLEKASGFLRSELGKRIR-LRHVPELIFKFDDSIAYGSHIEKLLT 109


>gi|293393152|ref|ZP_06637467.1| ribosome-binding factor A [Serratia odorifera DSM 4582]
 gi|291424298|gb|EFE97512.1| ribosome-binding factor A [Serratia odorifera DSM 4582]
          Length = 136

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 11/120 (9%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---- 61
            K   R  RV +E++  +  +IL  E +D  +   + ++S V +S DL  A VY++    
Sbjct: 2   AKEFSRGQRVAQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYAKVYVTFLNV 58

Query: 62  LPLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           L  +  PD V   I AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 59  LTENHDPDLVTNGIKALQDASGYIRTLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVT 117


>gi|319649518|ref|ZP_08003674.1| ribosome-binding factor A [Bacillus sp. 2_A_57_CT2]
 gi|317398680|gb|EFV79362.1| ribosome-binding factor A [Bacillus sp. 2_A_57_CT2]
          Length = 126

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S RA RVGE+++  L  +I   + +D  +    +++++V ++ DL+ ATV+IS+  D   
Sbjct: 2   SLRANRVGEQMKKELGEII-GRKIKDPRVG--FVTVTDVQVTGDLQQATVFISVLGDEEQ 58

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  +  L     FIR  IG+ +R LR  PE+ F +D S+    ++ +L+
Sbjct: 59  RENTLRGLAKAKGFIRSEIGQRIR-LRKTPEILFEFDESIDYGNRIESLL 107


>gi|282880568|ref|ZP_06289275.1| ribosome-binding factor A [Prevotella timonensis CRIS 5C-B1]
 gi|281305671|gb|EFA97724.1| ribosome-binding factor A [Prevotella timonensis CRIS 5C-B1]
          Length = 111

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R     ++S++ V +S DL V T Y+S+      D ++  +N N K IR  +G  +RN
Sbjct: 24  QTRATHGVMVSVTRVRVSPDLSVCTAYLSIFPSEKGDEILENINKNNKSIRYELGSRMRN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL     ++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYIEHIDELL 109


>gi|255689941|ref|ZP_05413616.1| ribosome-binding factor A [Bacteroides finegoldii DSM 17565]
 gi|260624547|gb|EEX47418.1| ribosome-binding factor A [Bacteroides finegoldii DSM 17565]
          Length = 110

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V +S D+ +A VY+S+      + ++  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LVSVSAVRISPDMSIARVYLSVFPSEKAEEIVKNVNDNMKTIRYELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    K+++L+
Sbjct: 92  KFFVDDSLDYIEKIDSLL 109


>gi|29654722|ref|NP_820414.1| ribosome-binding factor A [Coxiella burnetii RSA 493]
 gi|153207247|ref|ZP_01946011.1| ribosome-binding factor A [Coxiella burnetii 'MSU Goat Q177']
 gi|154707600|ref|YP_001423974.1| ribosome-binding factor A [Coxiella burnetii Dugway 5J108-111]
 gi|161830027|ref|YP_001597275.1| ribosome-binding factor A [Coxiella burnetii RSA 331]
 gi|165918811|ref|ZP_02218897.1| ribosome-binding factor A [Coxiella burnetii RSA 334]
 gi|212218230|ref|YP_002305017.1| ribosome-binding factor A [Coxiella burnetii CbuK_Q154]
 gi|34098454|sp|Q83BS2|RBFA_COXBU RecName: Full=Ribosome-binding factor A
 gi|189039536|sp|A9KBM2|RBFA_COXBN RecName: Full=Ribosome-binding factor A
 gi|189039537|sp|A9N8V5|RBFA_COXBR RecName: Full=Ribosome-binding factor A
 gi|226723595|sp|B6J6B2|RBFA_COXB1 RecName: Full=Ribosome-binding factor A
 gi|29541990|gb|AAO90928.1| ribosome-binding factor A [Coxiella burnetii RSA 493]
 gi|120576735|gb|EAX33359.1| ribosome-binding factor A [Coxiella burnetii 'MSU Goat Q177']
 gi|154356886|gb|ABS78348.1| ribosome-binding factor A [Coxiella burnetii Dugway 5J108-111]
 gi|161761894|gb|ABX77536.1| ribosome-binding factor A [Coxiella burnetii RSA 331]
 gi|165917535|gb|EDR36139.1| ribosome-binding factor A [Coxiella burnetii RSA 334]
 gi|212012492|gb|ACJ19872.1| ribosome-binding factor A [Coxiella burnetii CbuK_Q154]
          Length = 119

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 4/109 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R  RV + +   L   +L  E +D  +S+  IS++ V +S DL+ A V+ SL  + + 
Sbjct: 2   SQRQQRVADLIHQQLAE-LLKKEVRDSRLSK--ISLTAVSISPDLKQAKVFYSLLENQNE 58

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             V  ALN    ++R  + ++   LRYVP+L F YD S++   +++ L+
Sbjct: 59  KEVQKALNKATGYLRHLLAQAT-VLRYVPKLEFVYDESIERAHRISLLI 106


>gi|327398880|ref|YP_004339749.1| Ribosome-binding factor A [Hippea maritima DSM 10411]
 gi|327181509|gb|AEA33690.1| Ribosome-binding factor A [Hippea maritima DSM 10411]
          Length = 133

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 66/114 (57%), Gaps = 7/114 (6%)

Query: 7   KNS--RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
           KNS  +R  RV  +++ A+  ++      ++L S   I++++V M+ DLR+A +++S  +
Sbjct: 4   KNSSFKRKDRVASQIKKAVSEILEFESGNEKLRS---ITLTDVEMTKDLRIAKIFVSSSM 60

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +++    +  L     FI+  +   +R L+Y+P+L F YD S+   +K+++++
Sbjct: 61  TEMTQKDTLDVLESAKGFIKKNLATKVR-LKYMPKLIFEYDASINYGFKIDSIL 113


>gi|291460968|ref|ZP_06026144.2| ribosome-binding factor A [Fusobacterium periodonticum ATCC 33693]
 gi|291379766|gb|EFE87284.1| ribosome-binding factor A [Fusobacterium periodonticum ATCC 33693]
          Length = 123

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 39  RDVISISEVCMSVDLRVATVYISL--PLD-----VSPDRVISALNCNIKFIRGRIGRSLR 91
           + ++S++EV ++ DL+ A  Y S+  PLD        + ++ ALN    F+R R+   + 
Sbjct: 34  KGLVSVTEVNVTEDLKFADTYFSILPPLDNEENQYEHEEILEALNEIKGFLRKRVAEEV- 92

Query: 92  NLRYVPELRFRYDTSLQSYWKLNALM 117
           ++R+ PE+R + D S+++  K+  L+
Sbjct: 93  DIRFTPEIRVKLDNSMENAMKITKLL 118


>gi|261212245|ref|ZP_05926531.1| ribosome-binding factor A [Vibrio sp. RC341]
 gi|262401658|ref|ZP_06078224.1| ribosome-binding factor A [Vibrio sp. RC586]
 gi|260838853|gb|EEX65504.1| ribosome-binding factor A [Vibrio sp. RC341]
 gi|262352075|gb|EEZ01205.1| ribosome-binding factor A [Vibrio sp. RC586]
          Length = 132

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
           PK   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
            + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L
Sbjct: 59  GEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNL 110


>gi|56963991|ref|YP_175722.1| ribosome-binding factor A [Bacillus clausii KSM-K16]
 gi|61214762|sp|Q5WFU4|RBFA_BACSK RecName: Full=Ribosome-binding factor A
 gi|56910234|dbj|BAD64761.1| ribosome-binding factor A [Bacillus clausii KSM-K16]
          Length = 118

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           RA+RVGE+++  L  +++ +    R+     ++++ V ++ DL+ AT +I++  D    +
Sbjct: 5   RAVRVGEQMKKELSDILIRDIKDPRV---RFVTVTGVDVTGDLQQATAFITVLGDEEERK 61

Query: 71  -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             ++ L     FIR  +G+ +R LR  PEL F +D S+Q   ++ +L+
Sbjct: 62  ATLAGLEKAKGFIRTELGKRIR-LRKTPELSFSFDESIQYGNRIESLL 108


>gi|37528347|ref|NP_931692.1| ribosome-binding factor A [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|39931723|sp|Q7MYY8|RBFA_PHOLL RecName: Full=Ribosome-binding factor A
 gi|36787785|emb|CAE16900.1| ribosome-binding factor A (fragment) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 136

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 11/115 (9%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----LPLDV 66
           R  RV +E++  +  +IL  E +D  I   + ++S V +S DL  A V+++    L  + 
Sbjct: 7   RTQRVAQEMQKEI-AIILQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLNVLTEEH 63

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I ALN    FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 64  DSDVVKNGIKALNEASGFIRSLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 117


>gi|95929625|ref|ZP_01312367.1| ribosome-binding factor A [Desulfuromonas acetoxidans DSM 684]
 gi|95134322|gb|EAT15979.1| ribosome-binding factor A [Desulfuromonas acetoxidans DSM 684]
          Length = 119

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           ++R  RV E++   +  ++L      R+     ++I+ V +S DLR A ++ + +  +  
Sbjct: 3   TQRTYRVAEQIHKEISDIMLRGLRDPRV---GFVTITSVDISSDLRHAKIFFTVMGEEAD 59

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            ++    L+  + F+R  +G+ ++ LR+VP+L F+YDTS+     +  L+
Sbjct: 60  AEKTQQGLDSAVPFLRRELGKRMK-LRHVPDLVFKYDTSIAYGSHIEELL 108


>gi|161582021|ref|NP_230293.2| ribosome-binding factor A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|255744139|ref|ZP_05418092.1| ribosome-binding factor A [Vibrio cholera CIRS 101]
 gi|258624685|ref|ZP_05719619.1| ribosome-binding factor A [Vibrio mimicus VM603]
 gi|262156115|ref|ZP_06029234.1| ribosome-binding factor A [Vibrio cholerae INDRE 91/1]
 gi|262169943|ref|ZP_06037633.1| ribosome-binding factor A [Vibrio cholerae RC27]
 gi|262189598|ref|ZP_06047996.1| ribosome-binding factor A [Vibrio cholerae CT 5369-93]
 gi|20978661|sp|Q9KU79|RBFA_VIBCH RecName: Full=Ribosome-binding factor A
 gi|172047750|sp|A5F927|RBFA_VIBC3 RecName: Full=Ribosome-binding factor A
 gi|255738079|gb|EET93471.1| ribosome-binding factor A [Vibrio cholera CIRS 101]
 gi|258582972|gb|EEW07787.1| ribosome-binding factor A [Vibrio mimicus VM603]
 gi|262021677|gb|EEY40388.1| ribosome-binding factor A [Vibrio cholerae RC27]
 gi|262030151|gb|EEY48796.1| ribosome-binding factor A [Vibrio cholerae INDRE 91/1]
 gi|262034521|gb|EEY52863.1| ribosome-binding factor A [Vibrio cholerae CT 5369-93]
 gi|327483445|gb|AEA77852.1| Ribosome-binding factor A [Vibrio cholerae LMA3894-4]
          Length = 132

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
           PK   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 59  GEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111


>gi|197287231|ref|YP_002153103.1| ribosome-binding factor A [Proteus mirabilis HI4320]
 gi|227357074|ref|ZP_03841444.1| ribosome-binding factor A [Proteus mirabilis ATCC 29906]
 gi|238690098|sp|B4F2C0|RBFA_PROMH RecName: Full=Ribosome-binding factor A
 gi|194684718|emb|CAR46706.1| ribosome-binding factor A [Proteus mirabilis HI4320]
 gi|227162766|gb|EEI47729.1| ribosome-binding factor A [Proteus mirabilis ATCC 29906]
          Length = 133

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 14/117 (11%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
           RA RV +E++  +  +IL  E +D  I   + ++S V +S DL  A V+++  L++S   
Sbjct: 7   RAQRVSQEMQKEI-AIILQREVKDPRIG--MATVSGVEISRDLAYAKVFVTF-LNLSAGE 62

Query: 69  -------DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
                  +  + ALN    FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 63  ESDEEMVENGLKALNEAAGFIRSLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVS 118


>gi|152980431|ref|YP_001354184.1| ribosome-binding factor A [Janthinobacterium sp. Marseille]
 gi|172049092|sp|A6T0Y7|RBFA_JANMA RecName: Full=Ribosome-binding factor A
 gi|151280508|gb|ABR88918.1| ribosome-binding factor A [Janthinobacterium sp. Marseille]
          Length = 128

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R LRV ++++  L  +I   E +D  +   +I+I+EV ++ D   A V+ ++  D   D 
Sbjct: 11  RGLRVADQIQRDLSEIIAF-ELKDPRVG--MITITEVQVTPDYAHAKVFFTMLSDKKDDI 67

Query: 70  -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              +S L     +IRG++GR L  +  +PEL F +DTS     +++ L+
Sbjct: 68  KNTVSGLTAASGYIRGQLGRRL-TIHTLPELHFVHDTSTARGIEMSKLI 115


>gi|269137764|ref|YP_003294464.1| ribosome-binding factor A [Edwardsiella tarda EIB202]
 gi|267983424|gb|ACY83253.1| ribosome-binding factor A [Edwardsiella tarda EIB202]
 gi|304557821|gb|ADM40485.1| Ribosome-binding factor A [Edwardsiella tarda FL6-60]
          Length = 132

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 7/111 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RV +E++  +  +IL  E +D  +   + ++S V +S DL    V+++   D  P+ 
Sbjct: 7   RTQRVAQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYTKVFVTFLNDGEPET 63

Query: 71  V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           V   + AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 64  VKAGLKALQDASGFIRMLLGKAMR-LRVVPELTFAYDASLVEGMRMSNLVS 113


>gi|324119534|gb|EGC13416.1| ribosome-binding proteinA [Escherichia coli E1167]
          Length = 100

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVP 97
           + ++S V MS DL  A VY++   D   D V   I AL     FIR  +G+++R LR VP
Sbjct: 2   MTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVP 60

Query: 98  ELRFRYDTSLQSYWKLNALMC 118
           EL F YD SL    +++ L+ 
Sbjct: 61  ELTFFYDNSLVEGMRMSNLVT 81


>gi|167552067|ref|ZP_02345820.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168243119|ref|ZP_02668051.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262704|ref|ZP_02684677.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463492|ref|ZP_02697409.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194446175|ref|YP_002042542.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194448489|ref|YP_002047314.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197263114|ref|ZP_03163188.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|238690662|sp|B4TJ05|RBFA_SALHS RecName: Full=Ribosome-binding factor A
 gi|238693632|sp|B4T6Z7|RBFA_SALNS RecName: Full=Ribosome-binding factor A
 gi|194404838|gb|ACF65060.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406793|gb|ACF67012.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195633310|gb|EDX51724.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197241369|gb|EDY23989.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205323213|gb|EDZ11052.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205337734|gb|EDZ24498.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348416|gb|EDZ35047.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 133

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|329962338|ref|ZP_08300343.1| ribosome-binding factor A [Bacteroides fluxus YIT 12057]
 gi|328530199|gb|EGF57080.1| ribosome-binding factor A [Bacteroides fluxus YIT 12057]
          Length = 110

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V +S D+ VA  Y+S+      + +I  +N N+K +R  +G  +R+ LR VPEL
Sbjct: 32  LVSVSAVRISPDMSVARAYLSIFPSEKGEEMIKNINANMKSVRYELGTRVRHQLRIVPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    K++ L+
Sbjct: 92  KFFVDDSLDYLEKIDELL 109


>gi|212212199|ref|YP_002303135.1| ribosome-binding factor A [Coxiella burnetii CbuG_Q212]
 gi|226723596|sp|B6IZ62|RBFA_COXB2 RecName: Full=Ribosome-binding factor A
 gi|212010609|gb|ACJ17990.1| ribosome-binding factor A [Coxiella burnetii CbuG_Q212]
          Length = 119

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 4/109 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R  RV + +   L   +L  E +D  +S+  IS++ V +S DL+ A V+ SL  + + 
Sbjct: 2   SQRQQRVADLIHQQLAE-LLKKEVRDSRLSK--ISLTAVSISPDLKQAKVFYSLLENQNE 58

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             V  ALN    ++R  + ++   LRYVP+L F YD S++   +++ L+
Sbjct: 59  KEVQKALNKATGYLRHLLAQAT-VLRYVPKLEFVYDESIERAHRISFLI 106


>gi|312898339|ref|ZP_07757729.1| ribosome-binding factor A [Megasphaera micronuciformis F0359]
 gi|310620258|gb|EFQ03828.1| ribosome-binding factor A [Megasphaera micronuciformis F0359]
          Length = 115

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 42  ISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           +++++  ++ DLR ATVY+SL   D      ++AL+    +IR  +G+ L  +RY P++ 
Sbjct: 33  VTVTDARITGDLREATVYVSLFGSDEEKKNTLAALSKAQGYIRSEVGKRL-GIRYSPQIE 91

Query: 101 FRYDTSLQSYWKLNALM 117
           F+ D SL+   K+ +++
Sbjct: 92  FKEDESLEYGMKIESIL 108


>gi|222055782|ref|YP_002538144.1| ribosome-binding factor A [Geobacter sp. FRC-32]
 gi|254789751|sp|B9M1G1|RBFA_GEOSF RecName: Full=Ribosome-binding factor A
 gi|221565071|gb|ACM21043.1| ribosome-binding factor A [Geobacter sp. FRC-32]
          Length = 123

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 60/109 (55%), Gaps = 5/109 (4%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
           +R+ +V E V   L+  +L    +D  I    ++I+ V ++ D+ +AT+Y + +  D   
Sbjct: 3   KRSEKVAEAVHE-LVSELLVKGLKDPRIG--FVTITGVKVTDDMHLATIYFTVIGSDEEK 59

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                 LN    FIR  +G+S R +RYVP++ F+YD S++   ++ +++
Sbjct: 60  KATEQGLNSARGFIRKEMGKSFR-MRYVPDIVFKYDASVEYGSRIESIL 107


>gi|188026375|ref|ZP_02961860.2| hypothetical protein PROSTU_03932 [Providencia stuartii ATCC 25827]
 gi|188020158|gb|EDU58198.1| hypothetical protein PROSTU_03932 [Providencia stuartii ATCC 25827]
          Length = 142

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 13/116 (11%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R+ RV +E++  +  +IL  E +D  I   + ++S V +S DL    V+++  L++S + 
Sbjct: 13  RSQRVAQEMQKEI-AIILQREVKDPRIG--MATVSGVELSRDLAYGKVFVTF-LNISHEE 68

Query: 71  --------VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
                    I ALN    FIR  +G+++R LR +PEL F YD+SL    +++ L+ 
Sbjct: 69  HESQMVQDGIKALNEASGFIRSLLGKAMR-LRVIPELTFSYDSSLVDGMRMSNLVS 123


>gi|160884142|ref|ZP_02065145.1| hypothetical protein BACOVA_02119 [Bacteroides ovatus ATCC 8483]
 gi|237717204|ref|ZP_04547685.1| ribosome-binding factor A [Bacteroides sp. D1]
 gi|237721800|ref|ZP_04552281.1| ribosome-binding factor A [Bacteroides sp. 2_2_4]
 gi|260173073|ref|ZP_05759485.1| putative ribosome-binding factor A [Bacteroides sp. D2]
 gi|262405972|ref|ZP_06082522.1| ribosome-binding factor A [Bacteroides sp. 2_1_22]
 gi|293372464|ref|ZP_06618848.1| ribosome-binding factor A [Bacteroides ovatus SD CMC 3f]
 gi|294647944|ref|ZP_06725496.1| ribosome-binding factor A [Bacteroides ovatus SD CC 2a]
 gi|294806342|ref|ZP_06765189.1| ribosome-binding factor A [Bacteroides xylanisolvens SD CC 1b]
 gi|298479976|ref|ZP_06998175.1| ribosome-binding factor A [Bacteroides sp. D22]
 gi|299144799|ref|ZP_07037867.1| ribosome-binding factor A [Bacteroides sp. 3_1_23]
 gi|315921350|ref|ZP_07917590.1| ribosome-binding factor A [Bacteroides sp. D2]
 gi|156110484|gb|EDO12229.1| hypothetical protein BACOVA_02119 [Bacteroides ovatus ATCC 8483]
 gi|229443187|gb|EEO48978.1| ribosome-binding factor A [Bacteroides sp. D1]
 gi|229448669|gb|EEO54460.1| ribosome-binding factor A [Bacteroides sp. 2_2_4]
 gi|262356847|gb|EEZ05937.1| ribosome-binding factor A [Bacteroides sp. 2_1_22]
 gi|292632647|gb|EFF51241.1| ribosome-binding factor A [Bacteroides ovatus SD CMC 3f]
 gi|292636852|gb|EFF55318.1| ribosome-binding factor A [Bacteroides ovatus SD CC 2a]
 gi|294446598|gb|EFG15218.1| ribosome-binding factor A [Bacteroides xylanisolvens SD CC 1b]
 gi|295085580|emb|CBK67103.1| ribosome-binding factor A [Bacteroides xylanisolvens XB1A]
 gi|298273785|gb|EFI15347.1| ribosome-binding factor A [Bacteroides sp. D22]
 gi|298515290|gb|EFI39171.1| ribosome-binding factor A [Bacteroides sp. 3_1_23]
 gi|313695225|gb|EFS32060.1| ribosome-binding factor A [Bacteroides sp. D2]
          Length = 110

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 32  FQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR 91
            Q + +   ++S+S V +S D+ +A VY+S+      + ++  +N N+K IR  +G  +R
Sbjct: 23  LQTKSMPGTLVSVSAVRISPDMSIARVYLSVFPSEKAEEMVKNINNNMKSIRYELGTRVR 82

Query: 92  N-LRYVPELRFRYDTSLQSYWKLNALM 117
           + LR +PEL+F  D SL    K+++L+
Sbjct: 83  HQLRIIPELKFFVDDSLDYIEKIDSLL 109


>gi|153805797|ref|ZP_01958465.1| hypothetical protein BACCAC_00033 [Bacteroides caccae ATCC 43185]
 gi|149130474|gb|EDM21680.1| hypothetical protein BACCAC_00033 [Bacteroides caccae ATCC 43185]
          Length = 110

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 32  FQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR 91
            Q + +   ++S+S V +S D+ +A VY+S+      + ++  +N N+K IR  +G  +R
Sbjct: 23  LQTKAMHGTLVSVSAVRISPDMSIARVYLSVFPSEKAEEMVKNINDNMKSIRYELGTRVR 82

Query: 92  -NLRYVPELRFRYDTSLQSYWKLNALM 117
             LR +PEL+F  D SL    K+++L+
Sbjct: 83  YQLRIIPELKFFVDDSLDYIEKIDSLL 109


>gi|331269627|ref|YP_004396119.1| ribosome-binding factor A [Clostridium botulinum BKT015925]
 gi|329126177|gb|AEB76122.1| ribosome-binding factor A [Clostridium botulinum BKT015925]
          Length = 121

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  R+ EEVR  +  +I ++    RL +  ++SI+ V ++ DLR A V+IS    + S  
Sbjct: 5   RLGRINEEVRKEISNIIRDDIHDPRLTA--MVSITRVEVTNDLRYAKVFISVFGSESSKK 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + AL  ++ F+R  +G  ++ LR  PE+    D S++    +N L+ 
Sbjct: 63  ETLEALKSSVGFMRREVGHRVK-LRCTPEIILELDESIEHGMHINDLLS 110


>gi|311277860|ref|YP_003940091.1| ribosome-binding factor A [Enterobacter cloacae SCF1]
 gi|308747055|gb|ADO46807.1| ribosome-binding factor A [Enterobacter cloacae SCF1]
          Length = 134

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVFVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|188586071|ref|YP_001917616.1| ribosome-binding factor A [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229568641|sp|B2A398|RBFA_NATTJ RecName: Full=Ribosome-binding factor A
 gi|179350758|gb|ACB85028.1| ribosome-binding factor A [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 131

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  ++ EE++  ++  IL  E +D  +    ++++ V +S DLR A V++S L    +  
Sbjct: 5   RKEKLQEELK-KIISDILQREVKDPSVG--FVTVTSVDLSGDLRHAKVFVSILGEKENQQ 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  +G+ +R LR+VPE+ F++D S++    +N L+
Sbjct: 62  DSLRGLEKATGFIRSELGKRVR-LRHVPEIVFKFDESIEHGDHINKLL 108


>gi|255038621|ref|YP_003089242.1| ribosome-binding factor A [Dyadobacter fermentans DSM 18053]
 gi|254951377|gb|ACT96077.1| ribosome-binding factor A [Dyadobacter fermentans DSM 18053]
          Length = 127

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
            S+R  +VG +++  L  +   +     L     ++I+ V ++ DL +A  Y+S   D +
Sbjct: 2   ESKRQQKVGRQIQKDLGEIFQKDA--QHLTHGSFVTITAVRVTPDLSIARAYLSFLPDKN 59

Query: 68  PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
              ++  +  N +FIR ++   +R+ LR VP L+F  D + +   K++ L     IP A
Sbjct: 60  KTMLLETIRENTRFIRQKLAERVRHQLRIVPHLQFYIDDTAEYAAKMDQLFADLVIPPA 118


>gi|261345160|ref|ZP_05972804.1| ribosome-binding factor A [Providencia rustigianii DSM 4541]
 gi|282566851|gb|EFB72386.1| ribosome-binding factor A [Providencia rustigianii DSM 4541]
          Length = 137

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 12/121 (9%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R+ RV +E++  +  +IL  E +D  I   + ++S V +S DL    V+++    
Sbjct: 2   AKEFSRSQRVAQEMQKEI-AIILQREIKDPRIG--MATVSGVELSRDLAYGKVFVTFFNI 58

Query: 66  VSPDRV--------ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + D+         I ALN    FIR  +G+++R LR +PEL F YD+SL    +++ L+
Sbjct: 59  ANDDKSEAEMVAEGIKALNEASGFIRSLLGKAMR-LRIIPELTFEYDSSLVDGMRMSNLV 117

Query: 118 C 118
            
Sbjct: 118 S 118


>gi|253573568|ref|ZP_04850911.1| ribosome-binding factor A [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251847096|gb|EES75101.1| ribosome-binding factor A [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 117

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           R  RVGE+++  L  V++ +E +D  I    ++++ V ++ DL  A VY+S+  D    +
Sbjct: 5   RTGRVGEQIKKEL-SVLIQSELKDPRIG--FVTVTGVDVTNDLSQAKVYLSVFGDEEQKN 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             +  L     F+R  IG+ +R LR+ PEL F+ D S+    ++  L+ 
Sbjct: 62  ESLKGLEKATGFLRTEIGKRIR-LRHTPELIFKIDESIAYGSRIEKLLG 109


>gi|237730087|ref|ZP_04560568.1| ribosome-binding factor A [Citrobacter sp. 30_2]
 gi|226908693|gb|EEH94611.1| ribosome-binding factor A [Citrobacter sp. 30_2]
          Length = 140

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A V+++   D 
Sbjct: 9   KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 66

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 67  DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 120


>gi|16762050|ref|NP_457667.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143539|ref|NP_806881.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415217|ref|YP_152292.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181796|ref|YP_218213.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161616291|ref|YP_001590256.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168819646|ref|ZP_02831646.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197247816|ref|YP_002148211.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197364147|ref|YP_002143784.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|204928299|ref|ZP_03219499.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213029804|ref|ZP_03344251.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213052980|ref|ZP_03345858.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213416951|ref|ZP_03350095.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213425435|ref|ZP_03358185.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582314|ref|ZP_03364140.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213620436|ref|ZP_03373262.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213646147|ref|ZP_03376200.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852745|ref|ZP_03382277.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224585083|ref|YP_002638882.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238910080|ref|ZP_04653917.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289810349|ref|ZP_06540978.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289825799|ref|ZP_06544967.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|20978598|sp|Q8Z3H8|RBFA_SALTI RecName: Full=Ribosome-binding factor A
 gi|61214734|sp|Q5PLB1|RBFA_SALPA RecName: Full=Ribosome-binding factor A
 gi|75480587|sp|Q57JI0|RBFA_SALCH RecName: Full=Ribosome-binding factor A
 gi|189039556|sp|A9N731|RBFA_SALPB RecName: Full=Ribosome-binding factor A
 gi|226723607|sp|B5F6T7|RBFA_SALA4 RecName: Full=Ribosome-binding factor A
 gi|238690733|sp|B5BGJ4|RBFA_SALPK RecName: Full=Ribosome-binding factor A
 gi|254789762|sp|C0PZ53|RBFA_SALPC RecName: Full=Ribosome-binding factor A
 gi|25302109|pir||AG0901 ribosome-binding factor A (P15B protein) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504353|emb|CAD07805.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139173|gb|AAO70741.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129474|gb|AAV78980.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129429|gb|AAX67132.1| tRNA pseudouridine 5S synthase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161365655|gb|ABX69423.1| hypothetical protein SPAB_04097 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197095624|emb|CAR61192.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197211519|gb|ACH48916.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|204322621|gb|EDZ07818.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205343329|gb|EDZ30093.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224469611|gb|ACN47441.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|320087732|emb|CBY97496.1| Ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322716283|gb|EFZ07854.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 133

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|146313239|ref|YP_001178313.1| ribosome-binding factor A [Enterobacter sp. 638]
 gi|166918676|sp|A4WEY2|RBFA_ENT38 RecName: Full=Ribosome-binding factor A
 gi|145320115|gb|ABP62262.1| ribosome-binding factor A [Enterobacter sp. 638]
          Length = 133

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|283836287|ref|ZP_06356028.1| ribosome-binding factor A [Citrobacter youngae ATCC 29220]
 gi|291067650|gb|EFE05759.1| ribosome-binding factor A [Citrobacter youngae ATCC 29220]
          Length = 134

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|212639519|ref|YP_002316039.1| ribosome-binding factor A [Anoxybacillus flavithermus WK1]
 gi|212560999|gb|ACJ34054.1| Ribosome-binding factor A [Anoxybacillus flavithermus WK1]
          Length = 127

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S RA RVGE+++  L  +I   + +D  I    +++++V ++ DL+ A VYIS+  D   
Sbjct: 10  SLRATRVGEQMKKELSDII-GRKLKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDEEQ 66

Query: 69  DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  +  L     FIR  IG+ +R LR  PE+ F  D ++    ++ +L+
Sbjct: 67  KKNTLKGLAKATGFIRSEIGQRIR-LRKTPEIYFEIDETIDYGQRIESLI 115


>gi|261342613|ref|ZP_05970471.1| ribosome-binding factor A [Enterobacter cancerogenus ATCC 35316]
 gi|296104881|ref|YP_003615027.1| ribosome-binding factor A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|288315260|gb|EFC54198.1| ribosome-binding factor A [Enterobacter cancerogenus ATCC 35316]
 gi|295059340|gb|ADF64078.1| ribosome-binding factor A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 134

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V MS DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|329956560|ref|ZP_08297157.1| ribosome-binding factor A [Bacteroides clarus YIT 12056]
 gi|328524457|gb|EGF51527.1| ribosome-binding factor A [Bacteroides clarus YIT 12056]
          Length = 112

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S V +S D+ VA  Y+S+      + +I  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LISVSAVRISPDMSVARAYLSVFPSEKSEEIIKNVNANMKSIRFELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    +++ L+
Sbjct: 92  KFFVDDSLDYLERIDELL 109


>gi|157964520|ref|YP_001499344.1| ribosome-binding factor A [Rickettsia massiliae MTU5]
 gi|157844296|gb|ABV84797.1| Ribosome-binding factor A [Rickettsia massiliae MTU5]
          Length = 117

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     NS R  ++   +  AL+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 1   MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ D ++ ALN +   IR  I   + N+++ P++RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDYGFDNAIKVAHLL 117


>gi|261867881|ref|YP_003255803.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413213|gb|ACX82584.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 128

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 7/112 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ RV +E++  +  VIL  E +D  I   ++++S+V +S DL  A V+++   D    
Sbjct: 6   KRSDRVAQEIQKEIA-VILQREVKDPRIG--MVTVSDVDVSSDLAYAKVFVTFLFDHDEQ 62

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            +   +  L     +IR  +G+++R L  VPE+RF YD SL    +++ L+ 
Sbjct: 63  AIAQGMKGLEKAAPYIRTLLGKAMR-LWIVPEIRFIYDQSLVEGMRMSNLVT 113


>gi|222151110|ref|YP_002560264.1| ribosome-binding factor A [Macrococcus caseolyticus JCSC5402]
 gi|254789755|sp|B9EBF7|RBFA_MACCJ RecName: Full=Ribosome-binding factor A
 gi|222120233|dbj|BAH17568.1| ribosome-binding factor A [Macrococcus caseolyticus JCSC5402]
          Length = 114

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 64/111 (57%), Gaps = 5/111 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           S R+ RVGE+++  +  +I N + ++  +    ++++EV ++ DL +A+VY++ L  +  
Sbjct: 2   SLRSERVGEQLKKEISEII-NQKLKNPNVG--FVTVTEVEVTGDLSLASVYVTVLGEEKE 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + +  L  +  FI+  I   + +LR VP+L+F+YD S+    K+  ++ 
Sbjct: 59  RKKSLEGLEKSKGFIKSEIAHRM-DLRIVPDLKFKYDESIDYGNKIERMIA 108


>gi|138894785|ref|YP_001125238.1| ribosome-binding factor A [Geobacillus thermodenitrificans NG80-2]
 gi|196247591|ref|ZP_03146293.1| ribosome-binding factor A [Geobacillus sp. G11MC16]
 gi|166218441|sp|A4IMD9|RBFA_GEOTN RecName: Full=Ribosome-binding factor A
 gi|134266298|gb|ABO66493.1| Ribosome-binding factor A [Geobacillus thermodenitrificans NG80-2]
 gi|196212375|gb|EDY07132.1| ribosome-binding factor A [Geobacillus sp. G11MC16]
          Length = 128

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE+++  L  +I   + +D  I    +++++V ++ DL+ A VYIS    D   +
Sbjct: 4   RATRVGEQMKKELSDII-GRKLKDPRIG--FVTVTDVRVTGDLQQAKVYISVFGDDEQRE 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + AL     FIR  IG+ +R LR  PE+ F  D +++   ++  L+
Sbjct: 61  NTLKALEKAKGFIRSEIGQRIR-LRKTPEILFEIDETIEYGSRIERLI 107


>gi|50365189|ref|YP_053614.1| ribosome-binding factor A [Mesoplasma florum L1]
 gi|50363745|gb|AAT75730.1| ribosome-binding factor A [Mesoplasma florum L1]
          Length = 116

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 7/82 (8%)

Query: 34  DRLISRDVI---SISEVCMSVDLRVATVYIS-LPL--DVSPDRVISALNCNIKFIRGRIG 87
           +R +  DV+   SI+EV ++ D  +A +Y S LPL  +++ + + S L  N K IR ++ 
Sbjct: 23  EREMKNDVLRALSIAEVRLTNDSEIAKIYWSFLPLNKEITKELIASELEENKKTIRMKLA 82

Query: 88  RSLRNLRYVPELRFRYDTSLQS 109
             L N R VP+L F YDTSL++
Sbjct: 83  HKL-NTRTVPDLFFEYDTSLEN 103


>gi|291532982|emb|CBL06095.1| ribosome-binding factor A [Megamonas hypermegale ART12/1]
          Length = 118

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 42  ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           ++I+EV +S DL  A +Y+S L  D   +     LN ++ FIR  +   +R L+++PE++
Sbjct: 33  VTITEVDVSSDLHNAKLYVSILGSDKQIEDTWKGLNSSLGFIRRELAHRIR-LKFIPEIK 91

Query: 101 FRYDTSLQSYWKLNALMC 118
           F  DTSLQ    +  L+ 
Sbjct: 92  FFMDTSLQYSAHIQELLI 109


>gi|224367582|ref|YP_002601745.1| RbfA [Desulfobacterium autotrophicum HRM2]
 gi|259551968|sp|C0QHM3|RBFA_DESAH RecName: Full=Ribosome-binding factor A
 gi|223690298|gb|ACN13581.1| RbfA [Desulfobacterium autotrophicum HRM2]
          Length = 119

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 9/113 (7%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           P++ R A R+ E     ++  ++  + QD  I  ++++IS V ++ DLR+A VY S+  D
Sbjct: 5   PRSERVAARIQE-----ILSDLIKKKVQDPRI--ELVTISSVRLTSDLRIAYVYFSVFGD 57

Query: 66  VS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  +     L  +  FI+  +   L  LRY+PEL+F +D S      ++ L+
Sbjct: 58  EARVEEATQGLKSSHGFIKRHVASQL-GLRYMPELKFIHDQSFDRGTHMDQLL 109


>gi|146298830|ref|YP_001193421.1| ribosome-binding factor A [Flavobacterium johnsoniae UW101]
 gi|189039541|sp|A5FL10|RBFA_FLAJO RecName: Full=Ribosome-binding factor A
 gi|146153248|gb|ABQ04102.1| ribosome-binding factor A [Flavobacterium johnsoniae UW101]
          Length = 130

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           + R  ++G  ++  L+  IL  E +   +S  VIS+S+V ++ DL VATVY+S+      
Sbjct: 3   TNRQKKIGSVIQKDLVD-ILQGEVRKNGVSNLVISVSKVSVTSDLSVATVYLSIFPQEKA 61

Query: 69  DRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
              +  +  N   I+  + + +R  LR VP L F  D SL    K++  +   + P+
Sbjct: 62  KETLEGIKSNTTLIKHDLSQRVRLQLRRVPNLVFFIDDSLDYIEKIDNALAGKENPI 118


>gi|159902668|ref|YP_001550012.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9211]
 gi|238687122|sp|A9BCX0|RBFA_PROM4 RecName: Full=Ribosome-binding factor A
 gi|159887844|gb|ABX08058.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9211]
          Length = 130

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 3/102 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
           + RR  +V   +R  +  ++L+   +D  ++  +++I+EV +S DL+   +++S+   D 
Sbjct: 3   HGRRVEKVSALIRKEMSQLLLDG-IRDERVASSMVTITEVEVSGDLQHCKIFVSIFGQDP 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             +   S L     F+RG +GR L+ +R  PE+ F+ D  ++
Sbjct: 62  KREEAFSGLQAASGFLRGELGRRLQ-MRRAPEIVFKLDKGME 102


>gi|325268521|ref|ZP_08135151.1| ribosome-binding factor A [Prevotella multiformis DSM 16608]
 gi|324989049|gb|EGC21002.1| ribosome-binding factor A [Prevotella multiformis DSM 16608]
          Length = 111

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   ++S++ V +S DL + T Y+S+      + ++  +N N K +R  +G+ + N
Sbjct: 24  QTRMMHGVLVSVTRVKISPDLSICTAYLSIFPSEKGEELLKNINANEKTVRYELGQRVHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYLDRIDELL 109


>gi|332519405|ref|ZP_08395872.1| ribosome-binding factor A [Lacinutrix algicola 5H-3-7-4]
 gi|332045253|gb|EGI81446.1| ribosome-binding factor A [Lacinutrix algicola 5H-3-7-4]
          Length = 133

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S+V ++VDL VA VY+S+  +     ++  +  N  FIR  + +  +N LR +P+L
Sbjct: 37  IISVSKVSVTVDLSVAKVYLSIFPNDKAKELVEGIKSNQPFIRHELAKRTKNQLRRMPQL 96

Query: 100 RFRYDTSLQSYWKL 113
            F  D SL+   K+
Sbjct: 97  YFFVDDSLEHIDKI 110


>gi|218246068|ref|YP_002371439.1| ribosome-binding factor A [Cyanothece sp. PCC 8801]
 gi|257059118|ref|YP_003137006.1| ribosome-binding factor A [Cyanothece sp. PCC 8802]
 gi|226736642|sp|B7K2E7|RBFA_CYAP8 RecName: Full=Ribosome-binding factor A
 gi|218166546|gb|ACK65283.1| ribosome-binding factor A [Cyanothece sp. PCC 8801]
 gi|256589284|gb|ACV00171.1| ribosome-binding factor A [Cyanothece sp. PCC 8802]
          Length = 128

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
           NSRR  RV   ++  +  ++L++   DR +   ++S++EV +S DL+ AT+++S+   + 
Sbjct: 3   NSRRVSRVSSLIKREVSQMLLHDIKDDR-VGAGMVSVTEVDVSGDLQHATIFVSIYGSEQ 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
           +    +  L  +  F+R  +   +R LR  PE+ FR D SL+
Sbjct: 62  AQAETMEGLKSSTSFVRRELSHRMR-LRRSPEVVFRQDHSLE 102


>gi|206900907|ref|YP_002250934.1| ribosome-binding factor A [Dictyoglomus thermophilum H-6-12]
 gi|226723598|sp|B5YEH6|RBFA_DICT6 RecName: Full=Ribosome-binding factor A
 gi|206740010|gb|ACI19068.1| ribosome-binding factor A [Dictyoglomus thermophilum H-6-12]
          Length = 120

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 44  ISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
           I+EV MS DLR A +Y+S+   +    + +  L     FIR  +G+ LR +R+VPE+ F 
Sbjct: 35  ITEVKMSKDLRYAHIYVSVYGSEEEKKQTMQGLESAKGFIRSELGKDLR-IRFVPEIFFE 93

Query: 103 YDTSLQ 108
            D SL+
Sbjct: 94  LDDSLE 99


>gi|294674933|ref|YP_003575549.1| ribosome-binding factor A [Prevotella ruminicola 23]
 gi|294472925|gb|ADE82314.1| ribosome-binding factor A [Prevotella ruminicola 23]
          Length = 111

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R     +IS++   +S DL + T Y+S+      + +++ +N N K IR  +G  +RN
Sbjct: 24  QTRATHGVMISVTRTKISPDLSICTAYLSVFPSEKGEEILTNINANTKQIRYELGTRVRN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            +R +PELRF  D SL     ++ L+
Sbjct: 84  QMRIIPELRFFIDDSLDYIEHIDELL 109


>gi|319900773|ref|YP_004160501.1| ribosome-binding factor A [Bacteroides helcogenes P 36-108]
 gi|319415804|gb|ADV42915.1| ribosome-binding factor A [Bacteroides helcogenes P 36-108]
          Length = 110

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V +S D+ VA  Y+S+      + +I  +N N+K +R  +G  +R+ LR +PEL
Sbjct: 32  LVSVSAVRISPDMSVARAYLSIFPSEKGEEMIKNINANMKSVRYELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    K++ L+
Sbjct: 92  KFFVDDSLDYLEKIDELL 109


>gi|297584083|ref|YP_003699863.1| ribosome-binding factor A [Bacillus selenitireducens MLS10]
 gi|297142540|gb|ADH99297.1| ribosome-binding factor A [Bacillus selenitireducens MLS10]
          Length = 115

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           RA RVGE+++  L  +I     +D  I    ++++ V ++ DL+ AT ++++  D    +
Sbjct: 5   RANRVGEQIKKELTDIIQRG-IKDPRIG--FVTVTAVDVTGDLQQATAFVTVYGDDDERE 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + + AL     +IR  IG+ ++ LR  PEL F++D S++   +++ L+
Sbjct: 62  KSLLALEKANGYIRSEIGKRIK-LRKTPELDFKFDESIERGNRIDELL 108


>gi|283850799|ref|ZP_06368085.1| ribosome-binding factor A [Desulfovibrio sp. FW1012B]
 gi|283573722|gb|EFC21696.1| ribosome-binding factor A [Desulfovibrio sp. FW1012B]
          Length = 111

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 63/108 (58%), Gaps = 10/108 (9%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           K P+ SRR+ ++ +++   +   +L +    RL   ++++IS V ++ D+ +A VY +L 
Sbjct: 2   KRPE-SRRSTKLADQIAREMATALLEDVQDPRL---ELVTISGVALNADMSIARVYYTLS 57

Query: 64  LDVSPDRVISA---LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            D +  R+ +A   L     F+R  +G+ LR +++VPELRF  DT L+
Sbjct: 58  GDEA--RMAAAAKGLEQAKGFLRTLLGQRLR-MKFVPELRFARDTYLE 102


>gi|254302275|ref|ZP_04969633.1| ribosome binding factor A [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322467|gb|EDK87717.1| ribosome binding factor A [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 123

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 63/115 (54%), Gaps = 10/115 (8%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLD-- 65
           +R   +G+E+   +  V+L      ++  + ++S++EV ++ DL+ A  Y S+  PL+  
Sbjct: 7   QRLEGIGKEIMRVISKVLLEEVKNPKI--KGLVSVTEVDVTEDLKFADTYFSILPPLNSD 64

Query: 66  ---VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                 + ++ ALN    F+R R+   + ++RY PE+R + D S+++  K+  L+
Sbjct: 65  EKQYDHEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAMKITKLL 118


>gi|282859948|ref|ZP_06269036.1| ribosome-binding factor A [Prevotella bivia JCVIHMP010]
 gi|282587351|gb|EFB92568.1| ribosome-binding factor A [Prevotella bivia JCVIHMP010]
          Length = 111

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   ++S++ V +S DL + T Y+S+      + +++ +N N K IR  +G+   N
Sbjct: 24  QTRMLHGVLVSVTRVKVSPDLSICTAYLSIFPSDKAEELLNNINANDKTIRYELGQRTHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYLDRIDHLL 109


>gi|254519183|ref|ZP_05131239.1| ribosome-binding factor A [Clostridium sp. 7_2_43FAA]
 gi|226912932|gb|EEH98133.1| ribosome-binding factor A [Clostridium sp. 7_2_43FAA]
          Length = 116

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISL--PLDVS 67
           R  R+ EEVR  +  VI+ +E +D R+ +  ++SI+ V ++ DLR A V++S+    +  
Sbjct: 5   RGGRINEEVRREI-SVIIRDEIKDPRMTA--MVSITAVKVTKDLRYAKVFVSIFGKNEDE 61

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
            +   +AL     +IR  IG+ + NLR  P++ F  D S+    K+  L+   K
Sbjct: 62  KNETFAALKSASGYIRKEIGQRI-NLRNTPQILFELDDSISYSMKIEELIEKAK 114


>gi|86157531|ref|YP_464316.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123499936|sp|Q2IPZ5|RBFA_ANADE RecName: Full=Ribosome-binding factor A
 gi|85774042|gb|ABC80879.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 138

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
           R  RV EE R  L   +L    +D  I+   ++++   MS DL+ ATVY+S+  D  V  
Sbjct: 6   RPARVAEEFRHEL-SALLARGLKDPRIT-GFVTVTGSKMSPDLKEATVYVSIHGDERVRK 63

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D   + L     F++  + R+LR LR  P LRF YD S+    ++  L+
Sbjct: 64  D-TFAGLQAAAGFLQREVSRALR-LRNTPHLRFVYDESVARGDRIERLL 110


>gi|123440814|ref|YP_001004805.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166199574|sp|A1JIX0|RBFA_YERE8 RecName: Full=Ribosome-binding factor A
 gi|122087775|emb|CAL10561.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 136

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 11/119 (9%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
           K   R+ RV +E++  +  +IL  E +D  +   + ++S + +S DL  A V+++    L
Sbjct: 3   KEFSRSQRVSQEMQKEI-ALILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVL 59

Query: 63  PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             +  PD V   I AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 60  TDNADPDTVKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVT 117


>gi|258516330|ref|YP_003192552.1| ribosome-binding factor A [Desulfotomaculum acetoxidans DSM 771]
 gi|257780035|gb|ACV63929.1| ribosome-binding factor A [Desulfotomaculum acetoxidans DSM 771]
          Length = 119

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           + R  R+ E ++  +  +I+N E +D  I     SI+ V +S DL  A +++S L  +  
Sbjct: 2   AHRPERLAESIKKEVSDMIIN-ELKDPRIG--FTSITSVEVSRDLSFAKIFVSVLGTEEE 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               + AL+    FIR  IGR +R LR+VPEL F  D S+    K+  L+
Sbjct: 59  QKATVEALSRANGFIRAEIGRRIR-LRHVPELAFISDQSIAHGTKIMKLL 107


>gi|167627173|ref|YP_001677673.1| ribosome-binding factor A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189039542|sp|B0TWR4|RBFA_FRAP2 RecName: Full=Ribosome-binding factor A
 gi|167597174|gb|ABZ87172.1| ribosome-binding factor A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 143

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 11/118 (9%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RV  E++  ++ ++L  + +D  ++    +I+EV +S DL  A VY +  LD+   +
Sbjct: 6   RVQRVASELQK-VISLLLRTKIKDSKLA--TATITEVELSKDLSYAKVYYTC-LDIQEAQ 61

Query: 71  VIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
            IS A   +  F R  I +SL NLR VP L+F YD SL    ++       KI  ALE
Sbjct: 62  YISKAFEKSKGFFRSSIAKSL-NLRIVPNLKFVYDKSLDYGMEMEG-----KIQQALE 113


>gi|149375754|ref|ZP_01893522.1| ribosome-binding factor A [Marinobacter algicola DG893]
 gi|149359879|gb|EDM48335.1| ribosome-binding factor A [Marinobacter algicola DG893]
          Length = 145

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 11/119 (9%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           P+   R  R+G++++  L  +I   E +D  +   +++++ V +S DL  A VY+SL   
Sbjct: 2   PREFSRIDRIGDQMQRELAQLI-QREVKDPRVG--MVTVNAVKVSRDLGYADVYVSLLTT 58

Query: 66  V-----SPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                 SP     ++ LN    F++G++GR+++ LR  P+LRF +DT L     ++ L+
Sbjct: 59  EELTEESPQVRDSLTVLNKAAGFLKGQVGRAMK-LRVTPQLRFHFDTLLGHSRHMDNLI 116


>gi|300718576|ref|YP_003743379.1| ribosome-binding factor A [Erwinia billingiae Eb661]
 gi|299064412|emb|CAX61532.1| Ribosome-binding factor A [Erwinia billingiae Eb661]
          Length = 138

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  VIL  E +D  +   ++++S V +S DL  A V+++   D 
Sbjct: 3   KEFGRPQRVSQELQKEI-AVILQREIKDPRLGM-MVTVSGVDLSRDLAYAKVFVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D +   + AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEDAIKGGLRALGDASGYIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|39996689|ref|NP_952640.1| ribosome-binding factor A [Geobacter sulfurreducens PCA]
 gi|61215118|sp|Q74CT2|RBFA_GEOSL RecName: Full=Ribosome-binding factor A
 gi|39983570|gb|AAR34963.1| ribosome-binding factor A [Geobacter sulfurreducens PCA]
 gi|298505700|gb|ADI84423.1| ribosome-binding factor A [Geobacter sulfurreducens KN400]
          Length = 118

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 4/78 (5%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPEL 99
           I+I+ V ++ D+R AT+Y ++  D    RV +A  L     F+R  IG+ LR L++ PEL
Sbjct: 32  ITITGVKVTDDIRQATIYYTVMGD-DEARVSTARGLASATGFLRREIGKQLR-LKFAPEL 89

Query: 100 RFRYDTSLQSYWKLNALM 117
            F+YD S++   +++ L+
Sbjct: 90  HFKYDQSIEYGNRIDQLL 107


>gi|167763867|ref|ZP_02435994.1| hypothetical protein BACSTE_02248 [Bacteroides stercoris ATCC
           43183]
 gi|167697983|gb|EDS14562.1| hypothetical protein BACSTE_02248 [Bacteroides stercoris ATCC
           43183]
          Length = 110

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S V +S D+ VA  Y+S+      + +I  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LISVSAVRISPDMSVARAYLSVFPSERSEEIIKNVNANMKSIRFELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    +++ L+
Sbjct: 92  KFFVDDSLDYLERIDELL 109


>gi|160891600|ref|ZP_02072603.1| hypothetical protein BACUNI_04053 [Bacteroides uniformis ATCC 8492]
 gi|156859007|gb|EDO52438.1| hypothetical protein BACUNI_04053 [Bacteroides uniformis ATCC 8492]
          Length = 113

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S V +S D+ VA  Y+S+      + ++  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 35  LISVSAVRISPDMSVARAYLSIFPSEKSEEIVKNINGNMKSIRFELGTRVRHQLRIIPEL 94

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    +++ L+
Sbjct: 95  KFFVDDSLDYLERIDELL 112


>gi|157368737|ref|YP_001476726.1| ribosome-binding factor A [Serratia proteamaculans 568]
 gi|166918678|sp|A8G908|RBFA_SERP5 RecName: Full=Ribosome-binding factor A
 gi|157320501|gb|ABV39598.1| ribosome-binding factor A [Serratia proteamaculans 568]
          Length = 136

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 11/119 (9%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
           K   R  RV +E++  +  +IL  E +D  +   + ++S V +S DL  A VY++    L
Sbjct: 3   KEFSRGQRVAQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYAKVYVTFLNVL 59

Query: 63  PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             +  P+ V   I AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 60  TENADPNLVPNGIKALEDASGYIRTLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVT 117


>gi|78183922|ref|YP_376357.1| ribosome-binding factor A [Synechococcus sp. CC9902]
 gi|123582140|sp|Q3B014|RBFA_SYNS9 RecName: Full=Ribosome-binding factor A
 gi|78168216|gb|ABB25313.1| ribosome-binding factor A [Synechococcus sp. CC9902]
          Length = 134

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PL 64
             RR  RV   +R     +++N   +D  + + ++SI+ V ++ DL+   +++S+   P 
Sbjct: 3   QGRRVERVAALIRKETSELLING-IRDERVHKGMVSITSVEVAGDLQHCKIFVSIFGEPN 61

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D   + V+  L     F+RG +GR L+ +R  PE++F+ D  L+    +  L+
Sbjct: 62  D--QNEVMEGLEAASGFLRGELGRRLQ-MRRAPEVKFQLDRGLEKGTSVLGLL 111


>gi|226946306|ref|YP_002801379.1| ribosome-binding factor A [Azotobacter vinelandii DJ]
 gi|259551948|sp|C1DFK8|RBFA_AZOVD RecName: Full=Ribosome-binding factor A
 gi|226721233|gb|ACO80404.1| ribosome-binding factor A [Azotobacter vinelandii DJ]
          Length = 129

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 10/117 (8%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-LP 63
            K+  R  R+G++++  L ++I   E +D RL    +I+++ V ++ DL  A V+I+ + 
Sbjct: 2   AKDYSRTQRIGDQMQRELSFLI-QREIKDPRL---GMITVTAVEVARDLSHAKVFITVMG 57

Query: 64  LDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + S D +   +  L+    F+R ++G+S++ LR VP+L F YD S++   +L+AL+
Sbjct: 58  KEDSADEIERNLEILHEAAGFLRMQLGKSMK-LRSVPQLHFSYDASVRRGVELSALI 113


>gi|226529836|ref|NP_001149358.1| LOC100282982 [Zea mays]
 gi|195626630|gb|ACG35145.1| ribosome-binding factor A [Zea mays]
          Length = 206

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 34  DRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRN 92
           DR +S  + +I++V +S DL+V  VY+S+  D    +V I  L    K++R +IGR ++ 
Sbjct: 79  DRYLSS-LTTIADVELSNDLQVCKVYVSVFGDERGKKVAIEGLKAKTKYVRSQIGRRMK- 136

Query: 93  LRYVPELRFRYDTSLQSYWKLNALM 117
           LR  PE+RF  D S++   ++ A++
Sbjct: 137 LRLTPEIRFIEDESMERGSRILAIL 161


>gi|326794271|ref|YP_004312091.1| ribosome-binding factor A [Marinomonas mediterranea MMB-1]
 gi|326545035|gb|ADZ90255.1| Ribosome-binding factor A [Marinomonas mediterranea MMB-1]
          Length = 128

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 64/111 (57%), Gaps = 8/111 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  R+G++++  L  +I   +F+ +      ++I+EV ++ DL  A VY + L +D  P 
Sbjct: 7   RTSRIGDQLQKELASLI---QFEVKDPRLGFVTINEVRVAKDLGYADVYYTVLGIDEDPK 63

Query: 70  RVIS---ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           ++     AL+    F+R R+ + ++ LR +P LRF YD S+ +  +++AL+
Sbjct: 64  KLADNQVALDSAKSFLRHRLSKEVK-LRVMPHLRFHYDQSVVNGARMSALI 113


>gi|56460075|ref|YP_155356.1| ribosome-binding factor A [Idiomarina loihiensis L2TR]
 gi|61214736|sp|Q5QTY9|RBFA_IDILO RecName: Full=Ribosome-binding factor A
 gi|56179085|gb|AAV81807.1| Ribosome-binding factor A [Idiomarina loihiensis L2TR]
          Length = 128

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 10/108 (9%)

Query: 17  EEVRSAL---MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
           E VR  L   + +IL  E +D  +S  ++++S+V +S DL  A V+++   D  P++   
Sbjct: 9   ERVRHQLQREIAMILQREIKDPRVS--MVTVSDVEVSRDLAYAKVFVTFFQD-DPEQTKQ 65

Query: 74  AL---NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           AL   N    FIR  +G+ ++  R VP+LRF++D SL    ++  L+ 
Sbjct: 66  ALKVLNEASGFIRSLLGKRIK-ARIVPQLRFQHDASLNEGIRMGKLVA 112


>gi|51594833|ref|YP_069024.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 32953]
 gi|108806043|ref|YP_649959.1| ribosome-binding factor A [Yersinia pestis Antiqua]
 gi|108813399|ref|YP_649166.1| ribosome-binding factor A [Yersinia pestis Nepal516]
 gi|145600791|ref|YP_001164867.1| ribosome-binding factor A [Yersinia pestis Pestoides F]
 gi|153946906|ref|YP_001402549.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 31758]
 gi|153997272|ref|ZP_02022372.1| ribosome-binding factor A [Yersinia pestis CA88-4125]
 gi|161484875|ref|NP_668026.2| ribosome-binding factor A [Yersinia pestis KIM 10]
 gi|161511439|ref|NP_991981.2| ribosome-binding factor A [Yersinia pestis biovar Microtus str.
           91001]
 gi|162419142|ref|YP_001608287.1| ribosome-binding factor A [Yersinia pestis Angola]
 gi|165925682|ref|ZP_02221514.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936784|ref|ZP_02225351.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010165|ref|ZP_02231063.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166214622|ref|ZP_02240657.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401225|ref|ZP_02306725.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420727|ref|ZP_02312480.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423323|ref|ZP_02315076.1| ribosome-binding factor A [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470845|ref|ZP_02335549.1| ribosome-binding factor A [Yersinia pestis FV-1]
 gi|170025944|ref|YP_001722449.1| ribosome-binding factor A [Yersinia pseudotuberculosis YPIII]
 gi|186893842|ref|YP_001870954.1| ribosome-binding factor A [Yersinia pseudotuberculosis PB1/+]
 gi|218930509|ref|YP_002348384.1| ribosome-binding factor A [Yersinia pestis CO92]
 gi|229839147|ref|ZP_04459306.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896636|ref|ZP_04511803.1| 30s ribosome binding factor [Yersinia pestis Pestoides A]
 gi|229899711|ref|ZP_04514852.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903873|ref|ZP_04518986.1| 30s ribosome binding factor [Yersinia pestis Nepal516]
 gi|270489137|ref|ZP_06206211.1| ribosome-binding factor A [Yersinia pestis KIM D27]
 gi|294505372|ref|YP_003569434.1| ribosome-binding factor A [Yersinia pestis Z176003]
 gi|20978601|sp|Q8ZBC3|RBFA_YERPE RecName: Full=Ribosome-binding factor A
 gi|61214873|sp|Q66F59|RBFA_YERPS RecName: Full=Ribosome-binding factor A
 gi|122383880|sp|Q1CC08|RBFA_YERPA RecName: Full=Ribosome-binding factor A
 gi|122384217|sp|Q1CEL4|RBFA_YERPN RecName: Full=Ribosome-binding factor A
 gi|166199575|sp|A4TRI2|RBFA_YERPP RecName: Full=Ribosome-binding factor A
 gi|166918680|sp|A7FMS1|RBFA_YERP3 RecName: Full=Ribosome-binding factor A
 gi|226723614|sp|A9R5A4|RBFA_YERPG RecName: Full=Ribosome-binding factor A
 gi|238688456|sp|B1JLX9|RBFA_YERPY RecName: Full=Ribosome-binding factor A
 gi|238691363|sp|B2K2Q6|RBFA_YERPB RecName: Full=Ribosome-binding factor A
 gi|51588115|emb|CAH19721.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 32953]
 gi|108777047|gb|ABG19566.1| ribosome-binding factor A [Yersinia pestis Nepal516]
 gi|108777956|gb|ABG12014.1| ribosome-binding factor A [Yersinia pestis Antiqua]
 gi|115349120|emb|CAL22083.1| ribosome-binding factor A [Yersinia pestis CO92]
 gi|145212487|gb|ABP41894.1| ribosome-binding factor A [Yersinia pestis Pestoides F]
 gi|149288909|gb|EDM38989.1| ribosome-binding factor A [Yersinia pestis CA88-4125]
 gi|152958401|gb|ABS45862.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 31758]
 gi|162351957|gb|ABX85905.1| ribosome-binding factor A [Yersinia pestis Angola]
 gi|165915433|gb|EDR34043.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922294|gb|EDR39471.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991072|gb|EDR43373.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166204197|gb|EDR48677.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961533|gb|EDR57554.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049250|gb|EDR60658.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057493|gb|EDR67239.1| ribosome-binding factor A [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752478|gb|ACA69996.1| ribosome-binding factor A [Yersinia pseudotuberculosis YPIII]
 gi|186696868|gb|ACC87497.1| ribosome-binding factor A [Yersinia pseudotuberculosis PB1/+]
 gi|229679643|gb|EEO75746.1| 30s ribosome binding factor [Yersinia pestis Nepal516]
 gi|229687203|gb|EEO79278.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695513|gb|EEO85560.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700414|gb|EEO88446.1| 30s ribosome binding factor [Yersinia pestis Pestoides A]
 gi|262363438|gb|ACY60159.1| ribosome-binding factor A [Yersinia pestis D106004]
 gi|262367187|gb|ACY63744.1| ribosome-binding factor A [Yersinia pestis D182038]
 gi|270337641|gb|EFA48418.1| ribosome-binding factor A [Yersinia pestis KIM D27]
 gi|294355831|gb|ADE66172.1| ribosome-binding factor A [Yersinia pestis Z176003]
 gi|320013698|gb|ADV97269.1| 30s ribosome binding factor [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 136

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 11/119 (9%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
           K   R+ RV +E++  +  +IL  E +D  +   + ++S + +S DL  A V+++    L
Sbjct: 3   KEFSRSQRVSQEMQKEI-ALILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVL 59

Query: 63  PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             +  PD V   I AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 60  TDNADPDTVKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVS 117


>gi|297180951|gb|ADI17154.1| ribosome-binding factor a [uncultured gamma proteobacterium
           HF0070_08D07]
          Length = 130

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R+ ++G+  R  +  +I  N    RL+   +IS++EV ++ DL  A VY+S       D+
Sbjct: 18  RSEKIGDLFRDEIATIIQRNLRDPRLVK--IISVNEVSVAKDLAYADVYVSSFETQDEDQ 75

Query: 71  ---VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              +I +LN    FIR  + ++ + +R  P+LRF YD + +   +L +L+ 
Sbjct: 76  KQELILSLNGASGFIRTILSKTHK-MRSTPKLRFHYDDTYERVARLESLIA 125


>gi|270295326|ref|ZP_06201527.1| ribosome-binding factor A [Bacteroides sp. D20]
 gi|317478322|ref|ZP_07937486.1| ribosome-binding factor A [Bacteroides sp. 4_1_36]
 gi|270274573|gb|EFA20434.1| ribosome-binding factor A [Bacteroides sp. D20]
 gi|316905481|gb|EFV27271.1| ribosome-binding factor A [Bacteroides sp. 4_1_36]
          Length = 110

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S V +S D+ VA  Y+S+      + ++  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LISVSAVRISPDMSVARAYLSIFPSEKSEEIVKNINGNMKSIRFELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    +++ L+
Sbjct: 92  KFFVDDSLDYLERIDELL 109


>gi|85058356|ref|YP_454058.1| ribosome-binding factor A [Sodalis glossinidius str. 'morsitans']
 gi|123520130|sp|Q2NW22|RBFA_SODGM RecName: Full=Ribosome-binding factor A
 gi|84778876|dbj|BAE73653.1| ribosome-binding factor A [Sodalis glossinidius str. 'morsitans']
          Length = 138

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  RV +E++  +  +IL  E +D  +   + ++S V +S DL  A V+++   D
Sbjct: 2   AKEYSRTQRVAQEMQKEI-AIILQREIKDPRVG--MATVSGVEVSRDLAYAKVFVTFLND 58

Query: 66  VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            + ++V   + AL     FI   +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 59  NTLEQVKTGVRALQDAAGFIHSLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVS 113


>gi|311030084|ref|ZP_07708174.1| ribosome-binding factor A [Bacillus sp. m3-13]
          Length = 130

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R+ RVGE+++  L  +I   + +D  +    +++++V ++ DL+ A V+IS L  D    
Sbjct: 13  RSNRVGEQMKKELSDII-GRKIKDPRVG--FVTVTDVQVTGDLQQAKVFISVLGDDEKRQ 69

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IGR +R LR  PEL F +D S+     +N+L+
Sbjct: 70  DTLIGLAKAKGFIRSEIGRRIR-LRKTPELFFEFDESIAYGNHINSLI 116


>gi|242091890|ref|XP_002436435.1| hypothetical protein SORBIDRAFT_10g002540 [Sorghum bicolor]
 gi|241914658|gb|EER87802.1| hypothetical protein SORBIDRAFT_10g002540 [Sorghum bicolor]
          Length = 207

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 34  DRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRN 92
           DR +S  + +I++V +S DL+V  VY+S+  D    +V I  L    K++R +IG+ ++ 
Sbjct: 79  DRYLS-SLTTIADVELSNDLQVCKVYVSVFGDERGKKVAIEGLKAKTKYVRSQIGKRMK- 136

Query: 93  LRYVPELRFRYDTSLQSYWKLNALM 117
           LR  PE+RF  D S++   ++ A++
Sbjct: 137 LRLTPEIRFIEDESMERGSRILAIL 161


>gi|189465192|ref|ZP_03013977.1| hypothetical protein BACINT_01537 [Bacteroides intestinalis DSM
           17393]
 gi|189437466|gb|EDV06451.1| hypothetical protein BACINT_01537 [Bacteroides intestinalis DSM
           17393]
          Length = 110

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V +S DL VA  Y+S+      + +I  +N N+K +R  +G  +R+ LR +PEL
Sbjct: 32  LVSVSAVRISPDLSVARAYLSIFPSEKAEEMIKNINENMKSVRYELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    K++ L+
Sbjct: 92  KFFVDDSLDYLEKIDELL 109


>gi|333029565|ref|ZP_08457626.1| ribosome-binding factor A [Bacteroides coprosuis DSM 18011]
 gi|332740162|gb|EGJ70644.1| ribosome-binding factor A [Bacteroides coprosuis DSM 18011]
          Length = 110

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+SEV ++ DL +A  Y+S+  +     +I  +N N K IR  +G  +R+ LR +PEL
Sbjct: 32  LISVSEVRVTSDLSIARAYLSIFPNDKKQELIENINANAKAIRYDLGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
            F  D SL    +++ L+
Sbjct: 92  IFHIDDSLDYAERIDELL 109


>gi|254487255|ref|ZP_05100460.1| ribosome-binding factor A [Roseobacter sp. GAI101]
 gi|214044124|gb|EEB84762.1| ribosome-binding factor A [Roseobacter sp. GAI101]
          Length = 136

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 15  VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DRVIS 73
           +GE +R AL  V+   +  D  ++R  I++ EV  S DL++AT ++ LPL     D V+ 
Sbjct: 1   MGETIRRALSEVLARGDVHDPELNRMSITVGEVRASPDLKIATAFV-LPLGGEGRDEVLK 59

Query: 74  ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            L  N   +R ++ + L  L++ P+LRF+ D + 
Sbjct: 60  LLARNKGELRRQLSKKL-VLKFAPDLRFQLDETF 92


>gi|197334491|ref|YP_002155242.1| ribosome-binding factor A [Vibrio fischeri MJ11]
 gi|226723615|sp|B5FA80|RBFA_VIBFM RecName: Full=Ribosome-binding factor A
 gi|197315981|gb|ACH65428.1| ribosome-binding factor A [Vibrio fischeri MJ11]
          Length = 135

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PL 64
           K   R  RV ++++  L  V+L  E +D  I   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVSQQLQKEL-AVMLQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFFCVG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           D +P+  ++AL  +   +R  +G+ +R LR  PE+RF YD +L    +++ L+ 
Sbjct: 60  DQTPESSLAALKEHEPSLRMMLGKRIR-LRLTPEIRFTYDNTLVEGMRMSNLVT 112


>gi|241667735|ref|ZP_04755313.1| ribosome-binding factor A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876279|ref|ZP_05248989.1| ribosome-binding factor A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842300|gb|EET20714.1| ribosome-binding factor A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 143

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 11/118 (9%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RV  E++  ++ ++L  + +D  ++    +I+EV +S DL  A VY +  LD+   +
Sbjct: 6   RVQRVASELQK-VISLLLRTKIKDSKLA--TATITEVELSKDLSYAKVYYTC-LDIQEAQ 61

Query: 71  VIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
            IS A   +  F R  I +SL NLR VP L+F YD SL    ++       KI  ALE
Sbjct: 62  YISKAFEKSKGFFRSSIAKSL-NLRIVPNLKFIYDKSLDYGMEMEG-----KIQQALE 113


>gi|239947275|ref|ZP_04699028.1| ribosome-binding factor A [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921551|gb|EER21575.1| ribosome-binding factor A [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 122

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     NS R  ++   +  AL+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 1   MKKLTKTNSYRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ D ++ ALN +   IR  I   + N+++ P++RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NIKFSPDIRFHYDYGFDNAIKVEELL 117


>gi|295399855|ref|ZP_06809836.1| ribosome-binding factor A [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111633|ref|YP_003989949.1| ribosome-binding factor A [Geobacillus sp. Y4.1MC1]
 gi|294978258|gb|EFG53855.1| ribosome-binding factor A [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216734|gb|ADP75338.1| ribosome-binding factor A [Geobacillus sp. Y4.1MC1]
          Length = 126

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           RA RVGE+++  L  +I   + +D  I    +++++V ++ DL+ A VYIS+  D    +
Sbjct: 4   RATRVGEQMKKELSDII-GRKLKDPRIG--FVTVTDVRVTGDLQQAKVYISIFGDEEQRQ 60

Query: 71  -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F  D S++   ++  L+
Sbjct: 61  NTLKGLEKAKGFIRSEIGQRIR-LRKTPEIFFEIDESIEYGTRIEQLI 107


>gi|290473448|ref|YP_003466315.1| ribosome-binding factor, role in processing of 10S rRNA
           [Xenorhabdus bovienii SS-2004]
 gi|289172748|emb|CBJ79519.1| ribosome-binding factor, role in processing of 10S rRNA
           [Xenorhabdus bovienii SS-2004]
          Length = 136

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 13/116 (11%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
           R  RV +E++  +  +IL  E +D  I   + ++S V +S DL  A V+++  L+V    
Sbjct: 7   RTQRVAQEMQKEI-AIILQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTF-LNVLVEG 62

Query: 67  -SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              D V   I ALN    FIR  +G+++R LR +PEL F YD+SL    +++ L+ 
Sbjct: 63  QDSDMVNVGIKALNEASGFIRSLLGKAMR-LRVIPELTFSYDSSLVDGMRMSNLVT 117


>gi|237743257|ref|ZP_04573738.1| ribosome-binding factor A [Fusobacterium sp. 7_1]
 gi|256028612|ref|ZP_05442446.1| ribosome-binding factor A [Fusobacterium sp. D11]
 gi|260495120|ref|ZP_05815249.1| ribosome-binding factor A [Fusobacterium sp. 3_1_33]
 gi|289766530|ref|ZP_06525908.1| ribosome-binding factor A [Fusobacterium sp. D11]
 gi|229433036|gb|EEO43248.1| ribosome-binding factor A [Fusobacterium sp. 7_1]
 gi|260197563|gb|EEW95081.1| ribosome-binding factor A [Fusobacterium sp. 3_1_33]
 gi|289718085|gb|EFD82097.1| ribosome-binding factor A [Fusobacterium sp. D11]
          Length = 120

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 10/115 (8%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVS 67
           +R   +G+E+   +  V+L  E ++  I + ++S++EV ++ DL+ A  Y S+  PL+  
Sbjct: 4   QRLEGIGKEIMRVISKVLLE-EVKNPKI-KGLVSVTEVDVTEDLKFADTYFSILPPLNSD 61

Query: 68  P-----DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                 + ++ ALN    F+R R+   + ++RY PE+R + D S+++  K+  L+
Sbjct: 62  EKQYDNEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAIKITKLL 115


>gi|21957407|gb|AAM84277.1|AE013671_4 ribosome-binding factor A [Yersinia pestis KIM 10]
 gi|45435299|gb|AAS60858.1| ribosome-binding factor A [Yersinia pestis biovar Microtus str.
           91001]
          Length = 154

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 11/108 (10%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
           K   R+ RV +E++  +  +IL  E +D  +   + ++S + +S DL  A V+++    L
Sbjct: 21  KEFSRSQRVSQEMQKEIA-LILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVL 77

Query: 63  PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
             +  PD V   I AL     +IR  +G+++R LR VPEL F YD SL
Sbjct: 78  TDNADPDTVKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSL 124


>gi|289163638|ref|YP_003453776.1| Ribosome-binding factor A [Legionella longbeachae NSW150]
 gi|288856811|emb|CBJ10622.1| Ribosome-binding factor A [Legionella longbeachae NSW150]
          Length = 121

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
            N +R  RV E ++  L  +I       RL     ++IS V ++ DL  A VY ++ L+ 
Sbjct: 3   HNFKRTDRVAEMIQRKLAQIIPKEVKDPRLTG--FVTISAVKVAADLGHAKVYFTV-LND 59

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + V S LN    ++R  + RS+  LR VP+L F YD S++   +L+ L+
Sbjct: 60  DREMVASILNAASSYLRSVLARSI-TLRTVPQLHFVYDESIEYGQRLSRLI 109


>gi|134299803|ref|YP_001113299.1| ribosome-binding factor A [Desulfotomaculum reducens MI-1]
 gi|172044303|sp|A4J5X1|RBFA_DESRM RecName: Full=Ribosome-binding factor A
 gi|134052503|gb|ABO50474.1| ribosome-binding factor A [Desulfotomaculum reducens MI-1]
          Length = 120

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           S R  RV E ++  +  +I  N+ +D  I    ++I+ V ++ DL  A ++IS +  D  
Sbjct: 2   SHRPERVAEAIKKEVADLI-RNDIKDPRIG--FVTITGVEVTRDLSFAKIFISVMGSDAH 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               +S L  +  ++R  IGR ++ LR+ PEL F+ DTSL    ++  ++
Sbjct: 59  RQETLSILQKSAGYMRSEIGRRIK-LRHAPELIFKLDTSLDHGTRIAEIL 107


>gi|226329680|ref|ZP_03805198.1| hypothetical protein PROPEN_03590 [Proteus penneri ATCC 35198]
 gi|225202866|gb|EEG85220.1| hypothetical protein PROPEN_03590 [Proteus penneri ATCC 35198]
          Length = 133

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 14/117 (11%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R+ RV +E++  +  +IL  E +D  I   + ++S V +S DL  A V+++  L++S   
Sbjct: 7   RSQRVSQEMQKEI-AIILQREVKDPRIG--MATVSGVEISRDLAYAKVFVTF-LNLSGGE 62

Query: 71  ---------VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
                     ++ALN    FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 63  KSEEEMVAEGLTALNEAAGFIRSLLGKAMR-LRIVPELTFAYDNSLVEGMRMSNLVS 118


>gi|149189793|ref|ZP_01868074.1| ribosome-binding factor A [Vibrio shilonii AK1]
 gi|148836442|gb|EDL53398.1| ribosome-binding factor A [Vibrio shilonii AK1]
          Length = 138

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PL 64
           K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVAQQLQKEL-ALILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+ 
Sbjct: 60  EQTPESSLAALREHEAHIRMMLGKRIR-LRLTPEVRFHYDNTLVEGMRMSNLVS 112


>gi|219850519|ref|YP_002464952.1| ribosome-binding factor A [Chloroflexus aggregans DSM 9485]
 gi|254789740|sp|B8GAE1|RBFA_CHLAD RecName: Full=Ribosome-binding factor A
 gi|219544778|gb|ACL26516.1| ribosome-binding factor A [Chloroflexus aggregans DSM 9485]
          Length = 127

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 5/94 (5%)

Query: 23  LMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR--VISALNCNIK 80
           ++  ++  E +D  +     S+++V +S DL+ A VYIS+ +    +R   ++AL     
Sbjct: 16  ILGEVIQTELKDPRVG--FASVTKVEVSADLQHAKVYISI-MGTPEERATTMAALQRARG 72

Query: 81  FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
           F+R R+   +R++R++PEL    DTS+     +N
Sbjct: 73  FLRKRVAEEMRHMRFIPELHLIEDTSIDYSLHIN 106


>gi|145348606|ref|XP_001418737.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578967|gb|ABO97030.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 171

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 43  SISEVCMSVDLRVATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           ++++V +S DL+V  VY+S+  D    +  I  +    +++R +IGR + +LR  PE+RF
Sbjct: 52  TVADVEVSNDLQVVKVYVSILGDERGKNNAIKGMKRMEQYVRRKIGRRM-SLRLTPEIRF 110

Query: 102 RYDTSLQSYWKLNALM 117
            YD S +   K++AL+
Sbjct: 111 IYDDSFERGQKVSALL 126


>gi|269837287|ref|YP_003319515.1| ribosome-binding factor A [Sphaerobacter thermophilus DSM 20745]
 gi|269786550|gb|ACZ38693.1| ribosome-binding factor A [Sphaerobacter thermophilus DSM 20745]
          Length = 135

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 7/103 (6%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
            SRR +++ + +R  +   IL  E +D  +   + SI+ V +S DLR A VY+S+ L   
Sbjct: 2   TSRRQVQLADFLRDEISE-ILQREMKDPRLG--LASITRVELSPDLRYAKVYVSV-LGSE 57

Query: 68  PDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            DR   ++AL     F+R  +   +R +R+VPE+RFR D S++
Sbjct: 58  EDREATMAALTGAAGFVRHLLKPRMR-VRHVPEIRFRLDRSME 99


>gi|126664890|ref|ZP_01735874.1| ribosome-binding factor A [Marinobacter sp. ELB17]
 gi|126631216|gb|EBA01830.1| ribosome-binding factor A [Marinobacter sp. ELB17]
          Length = 152

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 13/112 (11%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL----PLDV-SP 68
           R+G++++  L  +I   E +D  +   +I+++ V +S DL  A +Y+SL     L   SP
Sbjct: 10  RIGDQMQRELAQLI-QREIKDPRVG--MITVNAVKVSRDLGYADIYVSLLTTEELGAESP 66

Query: 69  D--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYW-KLNALM 117
           +    ++ LN    F+RG++GR+++ LR VP LRF +D  LQ Y  +L+ L+
Sbjct: 67  EVKESLAVLNKASGFLRGQVGRAMK-LRVVPLLRFHFD-ELQGYSRRLDGLI 116


>gi|238650293|ref|YP_002916145.1| ribosome-binding factor A [Rickettsia peacockii str. Rustic]
 gi|259552070|sp|C4K0J6|RBFA_RICPU RecName: Full=Ribosome-binding factor A
 gi|238624391|gb|ACR47097.1| ribosome-binding factor A [Rickettsia peacockii str. Rustic]
          Length = 120

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     +S R  ++   +  AL+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 1   MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTTDLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ D ++ ALN +   IR  I   + N+++ P++RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVAHLL 117


>gi|51473624|ref|YP_067381.1| ribosome-binding factor A [Rickettsia typhi str. Wilmington]
 gi|61214908|sp|Q68WU3|RBFA_RICTY RecName: Full=Ribosome-binding factor A
 gi|51459936|gb|AAU03899.1| ribosome-binding factor A [Rickettsia typhi str. Wilmington]
          Length = 127

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     NS R  ++   +   L+ ++   +  DR +    ++I+++ ++ DL++A  Y 
Sbjct: 1   MKKLTKTNSHRQQKLASIINEVLIEILKRGKMLDRRLFDCPLTITKIVVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             P +  ++ + ++ ALN +   IR  I   + N+++ PE+RF YD    +  K+  L+
Sbjct: 61  -FPFNTKLTFNDIMDALNNSKHAIRNFITNKI-NMKFSPEIRFHYDYGFDNAIKIEKLL 117


>gi|15892529|ref|NP_360243.1| ribosome-binding factor A [Rickettsia conorii str. Malish 7]
 gi|20139548|sp|Q92I14|RBFA_RICCN RecName: Full=Ribosome-binding factor A
 gi|15619690|gb|AAL03144.1| ribosome-binding factor A [Rickettsia conorii str. Malish 7]
          Length = 120

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     +S R  ++   +  AL+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 1   MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ D ++ ALN +   IR  I   + N+++ P++RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVAHLL 117


>gi|89895262|ref|YP_518749.1| hypothetical protein DSY2516 [Desulfitobacterium hafniense Y51]
 gi|219669693|ref|YP_002460128.1| ribosome-binding factor A [Desulfitobacterium hafniense DCB-2]
 gi|122482377|sp|Q24UI7|RBFA_DESHY RecName: Full=Ribosome-binding factor A
 gi|254789746|sp|B8FR05|RBFA_DESHD RecName: Full=Ribosome-binding factor A
 gi|89334710|dbj|BAE84305.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539953|gb|ACL21692.1| ribosome-binding factor A [Desulfitobacterium hafniense DCB-2]
          Length = 125

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
            R+ R+ E ++  +  +I   E +D  I    ++++ V ++ DL  A VY+S+  D    
Sbjct: 4   HRSNRLAETLKQEISQLI-REELKDPRIG--FVTVTSVEVADDLGNAKVYVSVLGDSQQA 60

Query: 70  R-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  + AL     F+R  IG+ +R LR+ PE+ F+YDTS++    +  L+
Sbjct: 61  KDSLDALKRAAGFVRSEIGKRVR-LRHAPEIVFKYDTSIEHGAHIAQLL 108


>gi|308068701|ref|YP_003870306.1| ribosome-binding factor A [Paenibacillus polymyxa E681]
 gi|305857980|gb|ADM69768.1| Ribosome-binding factor A [Paenibacillus polymyxa E681]
          Length = 116

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 5/109 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RVGE+++  L  +I   E +D  I    I+++ V ++ DL  A +Y+S L  +   +
Sbjct: 5   RTGRVGEQIKKELSQLI-QTELKDPRIG--FITVTGVDLTNDLSQAKIYLSVLGDEEQKN 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + AL+    ++R  +G+ +R LR++PEL F+ D S+    ++  L+ 
Sbjct: 62  SSLKALDKANGYLRSELGKRIR-LRHIPELIFKIDESIAYGSRIEKLLS 109


>gi|152989168|ref|YP_001350785.1| ribosome-binding factor A [Pseudomonas aeruginosa PA7]
 gi|166219391|sp|A6VCK0|RBFA_PSEA7 RecName: Full=Ribosome-binding factor A
 gi|150964326|gb|ABR86351.1| ribosome-binding factor A [Pseudomonas aeruginosa PA7]
          Length = 128

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 66/115 (57%), Gaps = 7/115 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K+  R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A V+I++   
Sbjct: 2   AKDYSRTQRIGDQMQRELAQLI-QREIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58

Query: 66  VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              +RV   +  LN    ++R  +G+S++ LR VP+L F YD S++   +L+AL+
Sbjct: 59  DDAERVALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALI 112


>gi|298373455|ref|ZP_06983444.1| ribosome-binding factor A [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274507|gb|EFI16059.1| ribosome-binding factor A [Bacteroidetes oral taxon 274 str. F0058]
          Length = 111

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S+V +S D  +A VYIS+        + S ++ + K IR  +G+ ++N +R VPEL
Sbjct: 32  IISVSDVSISPDFALARVYISIFPSEKAGDIFSTIDTDSKSIRFELGKRIKNMMRTVPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
            F  D SL    +++ L+
Sbjct: 92  TFVLDDSLNYLERIDDLL 109


>gi|312129254|ref|YP_003996594.1| ribosome-binding factor a [Leadbetterella byssophila DSM 17132]
 gi|311905800|gb|ADQ16241.1| ribosome-binding factor A [Leadbetterella byssophila DSM 17132]
          Length = 124

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
           I   EF+  L + + ++I++V +S DL VA VY+S   + + + ++  +    K IRG  
Sbjct: 20  IFQREFRS-LFAGNFVTITDVKVSPDLSVAKVYLSFLKNHNRESLLEEIKEQTKKIRGMF 78

Query: 87  G-RSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
           G ++ + LR +P   F  D + +   K+  L     IP A E+
Sbjct: 79  GMKAGKQLRIIPHFSFFIDDTAEYAQKIEELFANIHIPPAEEE 121


>gi|113953283|ref|YP_731751.1| ribosome-binding factor A [Synechococcus sp. CC9311]
 gi|123132376|sp|Q0I721|RBFA_SYNS3 RecName: Full=Ribosome-binding factor A
 gi|113880634|gb|ABI45592.1| ribosome-binding factor A [Synechococcus sp. CC9311]
          Length = 134

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
             RR  RV   +R     ++++   +D  + + ++SI+EV +S DL+   +++S      
Sbjct: 3   QGRRVERVAALIRKETSELLIHG-IRDERVHQGMVSITEVEVSGDLQHCRIFVSVFGEQA 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             D V+  L     F+RG +GR L  +R  PE+ F+ D  ++
Sbjct: 62  QKDEVMDGLEAARGFLRGELGRRL-QMRRAPEIVFKLDLGIE 102


>gi|323343542|ref|ZP_08083769.1| ribosome-binding factor A [Prevotella oralis ATCC 33269]
 gi|323095361|gb|EFZ37935.1| ribosome-binding factor A [Prevotella oralis ATCC 33269]
          Length = 111

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   +IS++   +S DL + T Y+S+      D +I  +  N K IR  +G  + N
Sbjct: 24  QTRMMHGVMISVTRARVSPDLSICTAYLSIFPSEKSDEIIHNITKNEKTIRYELGTRVHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYIERIDELL 109


>gi|67459061|ref|YP_246685.1| ribosome-binding factor A [Rickettsia felis URRWXCal2]
 gi|75536505|sp|Q4ULQ3|RBFA_RICFE RecName: Full=Ribosome-binding factor A
 gi|67004594|gb|AAY61520.1| Ribosome-binding factor A [Rickettsia felis URRWXCal2]
          Length = 120

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     NS R  ++   +  AL+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 1   MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ D ++ AL+ +   IR  I   + N+++ P++RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTIDEIMDALSNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVEELL 117


>gi|19705315|ref|NP_602810.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|296328563|ref|ZP_06871082.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|22096032|sp|Q8RHJ7|RBFA_FUSNN RecName: Full=Ribosome-binding factor A
 gi|19713286|gb|AAL94109.1| Ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|296154372|gb|EFG95171.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 120

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 10/115 (8%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVS 67
           +R   +G+E+   +  V+L      ++  + ++S++EV ++ DL+ A  Y S+  PL   
Sbjct: 4   QRLEGIGKEIMRVISKVLLEEVKNPKI--KGLVSVTEVDVTEDLKFADTYFSILPPLKSD 61

Query: 68  P-----DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                 + ++ ALN    F+R R+   + ++RY PE+R + D S+++  K+  L+
Sbjct: 62  EKKYDHEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAIKITKLL 115


>gi|15604300|ref|NP_220816.1| ribosome-binding factor A [Rickettsia prowazekii str. Madrid E]
 gi|3914549|sp|O05964|RBFA_RICPR RecName: Full=Ribosome-binding factor A
 gi|2073498|emb|CAA72443.1| ribosomal binding factor A [Rickettsia prowazekii]
 gi|3860992|emb|CAA14892.1| RIBOSOME-BINDING FACTOR A (rbfA) [Rickettsia prowazekii]
 gi|292572049|gb|ADE29964.1| Ribosome-binding factor A [Rickettsia prowazekii Rp22]
          Length = 128

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     NS R  ++   +   L+ ++   +  D+ +    ++I+++ ++ DL++A  Y 
Sbjct: 1   MKKLTKTNSHRQQKLASIINEVLIEILKRGKMLDKRLFDCPLTITKIIVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             P +  ++ D ++ ALN +   IR  I   + N+++ PE+RF YD    +  K+  L+
Sbjct: 61  -FPFNTKLTFDEIMDALNNSKHAIRNFITNRI-NMKFSPEIRFYYDYGFDNAIKIEELL 117


>gi|302874664|ref|YP_003843297.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
 gi|307690722|ref|ZP_07633168.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
 gi|302577521|gb|ADL51533.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
          Length = 127

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R+ ++ EE++  +  VI N     RL    +IS++ V ++ DL+ A VY+S+   D   D
Sbjct: 5   RSEKINEEMKKQISDVIRNRVRDPRLAP--MISVTSVDVTKDLKYAKVYVSIFGSDTEKD 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L  +  FIR  +   + NLR  PEL F  DTS++    ++ L+
Sbjct: 63  ESLKILKNSSGFIRREVASKI-NLRSTPELLFNLDTSIEYGMHIDRLI 109


>gi|262393383|ref|YP_003285237.1| ribosome-binding factor A [Vibrio sp. Ex25]
 gi|262336977|gb|ACY50772.1| ribosome-binding factor A [Vibrio sp. Ex25]
          Length = 131

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 60  EQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLV 111


>gi|146283629|ref|YP_001173782.1| ribosome-binding factor A [Pseudomonas stutzeri A1501]
 gi|166219395|sp|A4VPN9|RBFA_PSEU5 RecName: Full=Ribosome-binding factor A
 gi|145571834|gb|ABP80940.1| ribosome-binding factor A [Pseudomonas stutzeri A1501]
 gi|327482024|gb|AEA85334.1| ribosome-binding factor A [Pseudomonas stutzeri DSM 4166]
          Length = 129

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 8/116 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  R+G++++  L  +I   E +D  +   +I+I+ V +S DL  A ++I++   
Sbjct: 2   AKEFSRTQRIGDQMQRELALLI-QREIKDPRLG--LITITAVDVSRDLSHAKIFITIMGQ 58

Query: 66  VSPDRVISA----LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                 I      LN    F+R ++G+S++ LR VP+L F YD S++   +L++L+
Sbjct: 59  DDDQEAIKGNLRILNDAAGFLRMQLGKSMK-LRTVPQLHFNYDASIRRGVELSSLI 113


>gi|91228268|ref|ZP_01262204.1| ribosome-binding factor A [Vibrio alginolyticus 12G01]
 gi|269966861|ref|ZP_06180934.1| ribosome-binding factor A [Vibrio alginolyticus 40B]
 gi|91188145|gb|EAS74447.1| ribosome-binding factor A [Vibrio alginolyticus 12G01]
 gi|269828528|gb|EEZ82789.1| ribosome-binding factor A [Vibrio alginolyticus 40B]
          Length = 131

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 60  EQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLV 111


>gi|209694191|ref|YP_002262119.1| ribosome-binding factor A [Aliivibrio salmonicida LFI1238]
 gi|226723591|sp|B6ENE3|RBFA_ALISL RecName: Full=Ribosome-binding factor A
 gi|208008142|emb|CAQ78284.1| ribosome-binding factor A [Aliivibrio salmonicida LFI1238]
          Length = 135

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 65/113 (57%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K   RA RV ++++  L  VIL  E +D  I   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRAQRVSQQLQKEL-AVILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFFCVG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +P+  ++AL  +   +R  +G+ +R+ R  PE+RF YD +L    +++ L+
Sbjct: 60  EQTPETCLAALKEHEVPVRMMLGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLV 111


>gi|297617189|ref|YP_003702348.1| ribosome-binding factor A [Syntrophothermus lipocalidus DSM 12680]
 gi|297145026|gb|ADI01783.1| ribosome-binding factor A [Syntrophothermus lipocalidus DSM 12680]
          Length = 126

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           +SRR  R+ EE++  L  +      +D  I    +SI+ V +S DL  A V++S+  D  
Sbjct: 2   SSRRQERLAEEIKRGLSALFFEG-LKDPGIDPRAVSITRVDVSRDLSYARVHVSVLGDEK 60

Query: 68  PDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             R  ++AL     FIR  +   L NLR+ PE+ F+ D S++   ++ A++
Sbjct: 61  KCRDTMAALERARGFIRSVLAGEL-NLRHAPEIVFQMDKSIEHGVRIAAIL 110


>gi|186681202|ref|YP_001864398.1| ribosome-binding factor A [Nostoc punctiforme PCC 73102]
 gi|28380131|sp|Q93LL7|RBFA_NOSP7 RecName: Full=Ribosome-binding factor A
 gi|14594717|gb|AAK68649.1| ribosome binding factor A [Nostoc punctiforme PCC 73102]
 gi|186463654|gb|ACC79455.1| ribosome-binding factor A [Nostoc punctiforme PCC 73102]
          Length = 139

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
           +RR  RV E ++  +  ++LN    DR +   ++S+++V +S DL+ A +Y+S+   D +
Sbjct: 4   NRRVSRVAELIKREVSQMLLNGIKDDR-VGTGMVSVTDVDVSGDLQHAKIYVSIYGTDEA 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               ++ L     ++R  +G  +R LR  PE+ F  D S++   K+ AL+ 
Sbjct: 63  KVETMAGLKSATGYVRSELGARVR-LRRTPEVIFLEDRSIERGNKVLALLS 112


>gi|329905068|ref|ZP_08273996.1| Ribosome-binding factor A [Oxalobacteraceae bacterium IMCC9480]
 gi|327547740|gb|EGF32516.1| Ribosome-binding factor A [Oxalobacteraceae bacterium IMCC9480]
          Length = 129

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 12/112 (10%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R +RV ++++  L  ++   E +D  +   +I+++EV ++ D   A V+ ++   +S D+
Sbjct: 11  RGIRVADQIQRDLAEIVAY-ELKDPRVG--MITVTEVQLTPDYAHAKVFFTM---LSDDK 64

Query: 71  -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                 ++ L     FIRG++GR L ++  +PEL F +DTS     +L+ L+
Sbjct: 65  EAIKNTVTGLKIASGFIRGQLGRRL-HVHTLPELHFVHDTSTARGMELSKLI 115


>gi|332706081|ref|ZP_08426153.1| ribosome-binding factor A [Lyngbya majuscula 3L]
 gi|332355173|gb|EGJ34641.1| ribosome-binding factor A [Lyngbya majuscula 3L]
          Length = 132

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
           RR  RV   ++  +  ++LN+   DR+ S  ++SI+ V +S DL+ A +Y+S+   D + 
Sbjct: 5   RRVFRVSSLIQQEVSQMLLNDIKDDRVGS-GMVSITNVDVSGDLQHAKIYVSIYGTDEAR 63

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
            + ++ L     ++R  +GR +R LR  PE+ F  D  L+   ++
Sbjct: 64  SKTMAGLKSATGYVRRELGRRIR-LRRTPEVMFIEDRGLEGGDQM 107


>gi|126730446|ref|ZP_01746257.1| ribosome-binding factor A [Sagittula stellata E-37]
 gi|126709179|gb|EBA08234.1| ribosome-binding factor A [Sagittula stellata E-37]
          Length = 113

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 17  EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVISAL 75
           E +R  L  V++  +  D  ++R  I++ EV +S DL+VAT Y+ +PL     D + + L
Sbjct: 3   EVIRRQLSDVLMRGDVHDPELNRLSITVGEVRVSPDLKVATAYV-VPLGGQKADDMFALL 61

Query: 76  NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
           + N   +R  + + L  L++ PELRFR D +  +
Sbjct: 62  DRNKGELRRAVSKGL-TLKFAPELRFRLDETFDN 94


>gi|307111428|gb|EFN59662.1| hypothetical protein CHLNCDRAFT_12877 [Chlorella variabilis]
          Length = 128

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 43  SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           S++EV +S DL+VA VY+S+   DV  +  I  L     ++R  IG+ +R LR  PE+RF
Sbjct: 49  SVTEVHISNDLQVAKVYLSIYSDDVGKEVAIEGLQRLEGYVRKHIGKQIR-LRLTPEIRF 107

Query: 102 RYDTSLQSYWKLNALMCLPKIP 123
             D S++   ++  L  L ++P
Sbjct: 108 VRDDSIERSERI--LKLLDQVP 127


>gi|156935693|ref|YP_001439609.1| ribosome-binding factor A [Cronobacter sakazakii ATCC BAA-894]
 gi|156533947|gb|ABU78773.1| hypothetical protein ESA_03560 [Cronobacter sakazakii ATCC BAA-894]
          Length = 150

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V +S DL  A V+++   D 
Sbjct: 20  KEFGRPQRVAQEMQKEI-AIILQREIKDPRVGL-MTTVSGVEVSRDLAYAKVFVTFLNDK 77

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 78  DEAAVKAGIKALQDASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 131


>gi|148241380|ref|YP_001226537.1| ribosome-binding factor A [Synechococcus sp. RCC307]
 gi|166219414|sp|A5GQM5|RBFA_SYNR3 RecName: Full=Ribosome-binding factor A
 gi|147849690|emb|CAK27184.1| Ribosome-binding factor A [Synechococcus sp. RCC307]
          Length = 131

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
           + RR  RV   +R  +  +++N   +D  +++ ++SI+ V ++ DL+   V +S+   + 
Sbjct: 3   HGRRVERVASMIRREMSELLVNG-VRDERVNQGMVSITNVVVAGDLQHCKVSVSIFGSES 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D+ ++ L     ++RG + R L N+R  PEL F +D  L    ++  L+ 
Sbjct: 62  EQDQAMAGLRSAAPYLRGELSRRL-NMRRTPELVFHHDKGLAQGVEVLGLLS 112


>gi|126652566|ref|ZP_01724731.1| ribosome-binding factor A [Bacillus sp. B14905]
 gi|126590694|gb|EAZ84810.1| ribosome-binding factor A [Bacillus sp. B14905]
          Length = 113

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
           S R+ RV E+++  L   IL  + +D  +    ++++ V ++ DL+ AT+YI SL  +  
Sbjct: 2   SLRSNRVAEQMKKEL-GDILGRKIKDPRVG--FVTVTGVEVTGDLQQATIYITSLGNERE 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  I AL     FIR  IG  +R LR  PEL F +D+S++   +++ L+
Sbjct: 59  REETIKALVKASGFIRSEIGSRIR-LRRTPELIFEFDSSIEYGNRIDTLL 107


>gi|294783783|ref|ZP_06749107.1| ribosome-binding factor A [Fusobacterium sp. 1_1_41FAA]
 gi|294480661|gb|EFG28438.1| ribosome-binding factor A [Fusobacterium sp. 1_1_41FAA]
          Length = 120

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 39  RDVISISEVCMSVDLRVATVYISL--PLD-----VSPDRVISALNCNIKFIRGRIGRSLR 91
           + ++S++EV ++ DL+ A  Y S+  PL+        + ++ ALN    F+R R+   + 
Sbjct: 31  KGLVSVTEVNVTEDLKFADTYFSILPPLNDEEKQYDHEEILEALNEIKGFLRKRVAEEV- 89

Query: 92  NLRYVPELRFRYDTSLQSYWKLNALM 117
           ++R+ PE+R + D S+++  K+  L+
Sbjct: 90  DIRFTPEIRVKLDNSMENAMKITKLL 115


>gi|326389434|ref|ZP_08211001.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus JW 200]
 gi|325994439|gb|EGD52864.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus JW 200]
          Length = 119

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R  R+ EE++  +  +IL  E +D  I + ++SI+++ ++ DLR A VY+S+   +    
Sbjct: 4   RNSRLSEEMKREISKMILE-EIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQ 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
                L     +IR  IGR ++ +RY PE+ F  D S++
Sbjct: 62  ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDRSIE 99


>gi|237808989|ref|YP_002893429.1| ribosome-binding factor A [Tolumonas auensis DSM 9187]
 gi|259552120|sp|C4L8X3|RBFA_TOLAT RecName: Full=Ribosome-binding factor A
 gi|237501250|gb|ACQ93843.1| ribosome-binding factor A [Tolumonas auensis DSM 9187]
          Length = 134

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 66/114 (57%), Gaps = 6/114 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   RA RV ++++  +  VIL  E +D  +   ++++S+V ++ DL+ A ++++  L+ 
Sbjct: 3   KEFGRADRVAQQIQREI-AVILQREVKDPRVG--MVTVSDVELTRDLQHAKIFVTFFLNE 59

Query: 67  SPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D    +  LN    +IR  +G++++ LR VPE+RF YD +L    +++ L+ 
Sbjct: 60  VDDIEAGVKVLNDASGYIRILMGKAMK-LRVVPEIRFVYDKTLVEGMRISNLVT 112


>gi|212709944|ref|ZP_03318072.1| hypothetical protein PROVALCAL_00994 [Providencia alcalifaciens DSM
           30120]
 gi|212687456|gb|EEB46984.1| hypothetical protein PROVALCAL_00994 [Providencia alcalifaciens DSM
           30120]
          Length = 136

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 11/120 (9%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--- 62
            K   R+ RV +E++  +  +IL  E +D  I   + ++S V +S DL    V+++    
Sbjct: 2   AKEFSRSQRVAQEMQKEI-AIILQREIKDPRIG--MATVSGVELSRDLAYGKVFVTFFNF 58

Query: 63  PLDVSPDRVIS----ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + S + +++    ALN    FIR  +G+++R LR +PEL F YD SL    +++ L+ 
Sbjct: 59  ANEKSEEEMVADGIKALNEASGFIRSLLGKAMR-LRIIPELTFEYDNSLVDGMRMSNLVS 117


>gi|282879081|ref|ZP_06287841.1| ribosome-binding factor A [Prevotella buccalis ATCC 35310]
 gi|281298815|gb|EFA91224.1| ribosome-binding factor A [Prevotella buccalis ATCC 35310]
          Length = 111

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R     ++S++ V +S DL + T Y+S+      + +I  +  N K IR  +G  +RN
Sbjct: 24  QTRATHGVMVSVTRVRVSPDLSICTAYLSIFPSEKAEEIIKNITANEKTIRYDLGTRVRN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR VPELRF  D SL     ++ L+
Sbjct: 84  QLRIVPELRFFIDDSLDYIEHIDELL 109


>gi|56478756|ref|YP_160345.1| ribosome-binding factor A [Aromatoleum aromaticum EbN1]
 gi|61214724|sp|Q5NZS0|RBFA_AZOSE RecName: Full=Ribosome-binding factor A
 gi|56314799|emb|CAI09444.1| ribosome-binding factor A [Aromatoleum aromaticum EbN1]
          Length = 127

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 13/117 (11%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRD----VISISEVCMSVDLRVATVYI- 60
           PK   R+ RV E+VR  L  +I       RL  +D     I++++V ++ D   A V+  
Sbjct: 2   PKEFSRSQRVAEQVRRELAELI-------RLEVKDPRVGFITLTDVEITPDYAHAKVFFT 54

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S+  +   D +++ L+    F+R  +G+ +R +  +PEL F YD+S++   +++ L+
Sbjct: 55  SMKGEEGLDEILTGLHRASGFLRRELGKRVR-IHTLPELHFHYDSSVERGSRMSQLI 110


>gi|239826659|ref|YP_002949283.1| ribosome-binding factor A [Geobacillus sp. WCH70]
 gi|259552007|sp|C5D9D1|RBFA_GEOSW RecName: Full=Ribosome-binding factor A
 gi|239806952|gb|ACS24017.1| ribosome-binding factor A [Geobacillus sp. WCH70]
          Length = 126

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           RA RVGE+++  L  +I   + +D  I    +++++V ++ DL+ A VYIS+  D     
Sbjct: 4   RATRVGEQMKKELSDII-GRKLKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDEEQRQ 60

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L     FIR  IG+ +R LR  PE+ F  D S++   ++  L+
Sbjct: 61  NTLKGLEKAKGFIRSEIGQRIR-LRKTPEIFFEIDESIEYGNRIEQLI 107


>gi|253991501|ref|YP_003042857.1| ribosome-binding factor A [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638379|emb|CAR67001.1| ribosome-binding factor a [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782951|emb|CAQ86116.1| ribosome-binding factor a [Photorhabdus asymbiotica]
          Length = 136

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 11/115 (9%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----LPLDV 66
           R  RV +E++  +  +IL  E +D  I   + ++S V +S DL  A V+++    L  + 
Sbjct: 7   RTQRVAQEMQKEI-AIILQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLNVLTEEH 63

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 64  DSDVVKNGIKALGEASGFIRSLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 117


>gi|167040281|ref|YP_001663266.1| ribosome-binding factor A [Thermoanaerobacter sp. X514]
 gi|256750793|ref|ZP_05491678.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914365|ref|ZP_07131681.1| ribosome-binding factor A [Thermoanaerobacter sp. X561]
 gi|307724399|ref|YP_003904150.1| ribosome-binding factor A [Thermoanaerobacter sp. X513]
 gi|166854521|gb|ABY92930.1| ribosome-binding factor A [Thermoanaerobacter sp. X514]
 gi|256750376|gb|EEU63395.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889300|gb|EFK84446.1| ribosome-binding factor A [Thermoanaerobacter sp. X561]
 gi|307581460|gb|ADN54859.1| ribosome-binding factor A [Thermoanaerobacter sp. X513]
          Length = 119

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R  R+ EE++  +  +IL  E +D  I + ++SI+++ ++ DLR A VY+S+   +    
Sbjct: 4   RNSRLSEEMKREISKMILE-EIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQ 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
                L     +IR  IGR ++ +RY PE+ F  D S++
Sbjct: 62  ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDRSIE 99


>gi|307264916|ref|ZP_07546478.1| ribosome-binding factor A [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920174|gb|EFN50386.1| ribosome-binding factor A [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 119

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R  R+ EE++  +  +IL  E +D  I + ++SI+++ ++ DLR A VY+S+   +    
Sbjct: 4   RNSRLSEEMKREISKMILE-EIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQ 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
                L     +IR  IGR ++ +RY PE+ F  D S++
Sbjct: 62  ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDRSIE 99


>gi|171769878|sp|A7MQE0|RBFA_ENTS8 RecName: Full=Ribosome-binding factor A
          Length = 133

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V +S DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-AIILQREIKDPRVGL-MTTVSGVEVSRDLAYAKVFVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAVKAGIKALQDASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|260887253|ref|ZP_05898516.1| ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
 gi|330838990|ref|YP_004413570.1| Ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
 gi|260863315|gb|EEX77815.1| ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
 gi|329746754|gb|AEC00111.1| Ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
          Length = 119

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  +V E ++  +  +IL  E +D  I    +++++V M+ DLR A +++S +  D +  
Sbjct: 5   RIEKVQELMKQEISQIILQ-ELKDPRIG--FVTVTKVEMTGDLREAKIFVSIMGKDEALK 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             +  L  ++ FIR  IG+ +R LR+ PE+ F  D SL     +  L+ 
Sbjct: 62  DTLQGLKSSLGFIRREIGKRIR-LRFTPEISFALDDSLAYSSHIQELLI 109


>gi|237739233|ref|ZP_04569714.1| ribosome-binding factor A [Fusobacterium sp. 2_1_31]
 gi|229422841|gb|EEO37888.1| ribosome-binding factor A [Fusobacterium sp. 2_1_31]
          Length = 120

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 39  RDVISISEVCMSVDLRVATVYISL--PLDVSP-----DRVISALNCNIKFIRGRIGRSLR 91
           + ++S++EV ++ DL+ A  Y S+  PL+        + ++ ALN    F+R R+   + 
Sbjct: 31  KGLVSVTEVNVTEDLKFADTYFSILPPLNNEEKQYDNEEILEALNEIKGFLRKRVAEEV- 89

Query: 92  NLRYVPELRFRYDTSLQSYWKLNALM 117
           ++R+ PE+R + D S+++  K+  L+
Sbjct: 90  DIRFTPEIRVKLDNSMENAMKITKLL 115


>gi|75908877|ref|YP_323173.1| ribosome-binding factor A [Anabaena variabilis ATCC 29413]
 gi|123609303|sp|Q3M9Q8|RBFA_ANAVT RecName: Full=Ribosome-binding factor A
 gi|75702602|gb|ABA22278.1| ribosome-binding factor A [Anabaena variabilis ATCC 29413]
          Length = 133

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 10/126 (7%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
            +RR  RV E ++  +  +++N    DR +   ++S+++V +S DL+ A +Y+S+   + 
Sbjct: 3   TNRRVSRVAELIKREVSQMLINGIKDDR-VGTGMVSVTDVDVSGDLQHAKIYVSIYGTEE 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-------CL 119
           +    ++ L     F+R  +G  +R LR  PE+ F  D S++   K+  L+        L
Sbjct: 62  AKAETMAGLKSATGFVRSELGARVR-LRRTPEVTFIEDRSIERGTKVLTLLNKLENARSL 120

Query: 120 PKIPVA 125
             IP A
Sbjct: 121 DDIPSA 126


>gi|332160080|ref|YP_004296657.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607360|emb|CBY28858.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664310|gb|ADZ40954.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862025|emb|CBX72192.1| ribosome-binding factor A [Yersinia enterocolitica W22703]
          Length = 136

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 11/119 (9%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
           K   R+ RV +E++  +  +IL  E +D  +   + ++S + +S DL  A V+++    L
Sbjct: 3   KEFSRSQRVSQEMQKEI-ALILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVL 59

Query: 63  PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             +  PD     I AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 60  TDNADPDTAKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVT 117


>gi|198277392|ref|ZP_03209923.1| hypothetical protein BACPLE_03604 [Bacteroides plebeius DSM 17135]
 gi|198269890|gb|EDY94160.1| hypothetical protein BACPLE_03604 [Bacteroides plebeius DSM 17135]
          Length = 111

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V +S D+  A VY+S+      + ++  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LVSVSIVRISPDMSYARVYLSVFPSERSEEIVKNINTNMKSIRFELGNRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    K++ L+
Sbjct: 92  KFFVDDSLDYAEKIDELL 109


>gi|224080508|ref|XP_002306146.1| predicted protein [Populus trichocarpa]
 gi|222849110|gb|EEE86657.1| predicted protein [Populus trichocarpa]
          Length = 166

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           + +IS+V +S DL+V  VY+S+  D     V I+ L    K++R ++GR ++ LR  PE+
Sbjct: 47  LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMK-LRLTPEI 105

Query: 100 RFRYDTSLQSYWKLNALM 117
           RF  D  L+   ++ A++
Sbjct: 106 RFIEDEGLERGSRVIAIL 123


>gi|182417577|ref|ZP_02948902.1| ribosome-binding factor A [Clostridium butyricum 5521]
 gi|237668125|ref|ZP_04528109.1| ribosome-binding factor A [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378590|gb|EDT76118.1| ribosome-binding factor A [Clostridium butyricum 5521]
 gi|237656473|gb|EEP54029.1| ribosome-binding factor A [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 117

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 7/110 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           R  R+ EE +  +  +I  NE +D RL +  +IS+++V ++ DLR A VY+S+  +   +
Sbjct: 5   RGGRINEEFKREISNLI-QNEIKDPRLTA--MISVTDVKVTKDLRYAKVYVSIFCNDEEE 61

Query: 70  RV--ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +   ++AL     FIR  +G+ + NLR+ PE+    D S+     ++ L+
Sbjct: 62  KKSNLAALRGASGFIRKNVGQRI-NLRHTPEILIELDDSINYGMHMDELI 110


>gi|150016087|ref|YP_001308341.1| ribosome-binding factor A [Clostridium beijerinckii NCIMB 8052]
 gi|189039533|sp|A6LSQ5|RBFA_CLOB8 RecName: Full=Ribosome-binding factor A
 gi|149902552|gb|ABR33385.1| ribosome-binding factor A [Clostridium beijerinckii NCIMB 8052]
          Length = 118

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 5/109 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
           R  R+ EE +  +  +I N     RL +  +IS+++V ++ DLR A VY+S+    D   
Sbjct: 5   RGGRINEEFKREISNLIQNEVKDPRLTA--MISVTDVKVTKDLRYAKVYVSIFSKDDEEK 62

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              + AL     FIR  +G+ + NLR+ PE+    D S+     ++ L+
Sbjct: 63  KNNLEALKNASGFIRKSVGQKI-NLRHTPEIIIELDDSINYGMHMDELI 110


>gi|89898350|ref|YP_515460.1| ribosome-binding factor A [Chlamydophila felis Fe/C-56]
 gi|123483300|sp|Q254H3|RBFA_CHLFF RecName: Full=Ribosome-binding factor A
 gi|89331722|dbj|BAE81315.1| ribosome binding factor A [Chlamydophila felis Fe/C-56]
          Length = 120

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           +RR  +V   +R A+  VIL +    + IS   I+++ VC+S DL  A VY+S +P + +
Sbjct: 4   NRRIQKVNSLIREAIANVILKDVKHPK-ISNRWITVTRVCLSKDLHTARVYVSIMPHENT 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
               + AL  +  FI  R  + +  L+Y PE+ F
Sbjct: 63  SAETLKALKASAGFIAYRASKGVF-LKYFPEISF 95


>gi|260596203|ref|YP_003208774.1| ribosome-binding factor A [Cronobacter turicensis z3032]
 gi|260215380|emb|CBA27405.1| Ribosome-binding factor A [Cronobacter turicensis z3032]
          Length = 133

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   + ++S V +S DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQEMQKEI-AIILQREIKDPRVGL-MTTVSGVEVSRDLAYAKVFVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               V   I AL     FIR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DDAAVKAGIKALQDASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|238019438|ref|ZP_04599864.1| hypothetical protein VEIDISOL_01307 [Veillonella dispar ATCC 17748]
 gi|237864137|gb|EEP65427.1| hypothetical protein VEIDISOL_01307 [Veillonella dispar ATCC 17748]
          Length = 118

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 43  SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +I++V ++ DLR AT+Y+SL   D   +  + AL      IR  +G+ L+ LR++P + F
Sbjct: 34  TITDVHVTGDLREATIYVSLFGSDKEKEDTLIALKHAAGHIRTELGKVLK-LRHIPSITF 92

Query: 102 RYDTSLQSYWKLNALM 117
             DTSL     + +L+
Sbjct: 93  DKDTSLDYSMHIESLL 108


>gi|88812959|ref|ZP_01128202.1| ribosome-binding factor A [Nitrococcus mobilis Nb-231]
 gi|88789737|gb|EAR20861.1| ribosome-binding factor A [Nitrococcus mobilis Nb-231]
          Length = 114

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 43  SISEVCMSVDLRVATVYISL--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           ++SEV +S D+  A V ++          + ++ALN   + +RG +G+SLR LR VP LR
Sbjct: 26  TVSEVRLSRDMAYADVLVTRLGAQREESQQAVAALNHAARHLRGLLGQSLR-LRAVPALR 84

Query: 101 FRYDTSLQSYWKLNALM 117
           F YD S +   +++ L+
Sbjct: 85  FHYDDSFERSARVSHLI 101


>gi|92115188|ref|YP_575116.1| ribosome-binding factor A [Chromohalobacter salexigens DSM 3043]
 gi|122419135|sp|Q1QSZ1|RBFA_CHRSD RecName: Full=Ribosome-binding factor A
 gi|91798278|gb|ABE60417.1| ribosome-binding factor A [Chromohalobacter salexigens DSM 3043]
          Length = 131

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 7/111 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R  RV ++++  L  V++  E +D  +   ++++S V +S DL  A +YI+L  +    
Sbjct: 5   KRTDRVADQLQQEL-AVLIQREIKDPRLG--MVTVSSVKVSRDLGYADIYITLLGENDAA 61

Query: 70  RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           R+   +  L     F+R +I   ++ LR+VPELRF YD S+    +L++L+
Sbjct: 62  RIDENLKVLRHARGFLRSQIANRIK-LRHVPELRFHYDESVVRGQRLSSLI 111


>gi|23099055|ref|NP_692521.1| ribosome-binding factor A [Oceanobacillus iheyensis HTE831]
 gi|29427761|sp|Q8EQT9|RBFA_OCEIH RecName: Full=Ribosome-binding factor A
 gi|22777283|dbj|BAC13556.1| ribosome-binding factor A [Oceanobacillus iheyensis HTE831]
          Length = 113

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           RA R+ E+++  L   IL+ + +D  +    +++++V ++ DL+ A VYIS+  D    +
Sbjct: 5   RAHRIAEQMKKEL-GEILSRKIKDPRVG--FVTVTDVEVTGDLQQAKVYISVLGDEKKKQ 61

Query: 71  -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  L+    FIR  IG  +R LR  PE+ F +D +L+   ++  ++
Sbjct: 62  DTLLGLSKAKGFIRSEIGNRIR-LRKTPEITFEFDEALEQGNRIETIL 108


>gi|294791741|ref|ZP_06756889.1| ribosome-binding factor A [Veillonella sp. 6_1_27]
 gi|294456971|gb|EFG25333.1| ribosome-binding factor A [Veillonella sp. 6_1_27]
          Length = 118

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 43  SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +I++V ++ DLR AT+Y+SL   D   +  + AL      IR  +G+ L+ LR++P + F
Sbjct: 34  TITDVHVTGDLREATIYVSLFGSDKEKEDTLIALKHAAGHIRTELGKVLK-LRHIPSITF 92

Query: 102 RYDTSLQSYWKLNALM 117
             DTSL     + +L+
Sbjct: 93  DKDTSLDYSMHIESLL 108


>gi|258545581|ref|ZP_05705815.1| ribosome-binding factor A [Cardiobacterium hominis ATCC 15826]
 gi|258519281|gb|EEV88140.1| ribosome-binding factor A [Cardiobacterium hominis ATCC 15826]
          Length = 128

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 6   PKNSRRALRVGEEVRSALMWV---ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
           PK   R  R+GE++R  L      IL++          ++SI+ V ++ DL  A VY++ 
Sbjct: 2   PKGQDRTRRIGEQMRRDLAVAVPQILDHPHAS------LLSITAVRVTRDLSFAKVYVTH 55

Query: 63  PLDVSPDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            ++ + +R  ++ ALN +   +R  + + L ++R +PEL F YD S++   +++ L+
Sbjct: 56  VINDADERQTLLRALNAHAGQLRHALAQKL-SIRKMPELHFVYDDSVEYGARMDHLL 111


>gi|254507466|ref|ZP_05119600.1| ribosome-binding factor A [Vibrio parahaemolyticus 16]
 gi|219549536|gb|EED26527.1| ribosome-binding factor A [Vibrio parahaemolyticus 16]
          Length = 135

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +P+  + AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 60  EQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFHYDNTLVEGMRMSNLV 111


>gi|294671352|ref|ZP_06736203.1| hypothetical protein NEIELOOT_03061 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306984|gb|EFE48227.1| hypothetical protein NEIELOOT_03061 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 123

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
           NKN +   R  RV E++   L  ++       R      I+I++V ++ D   ATVY ++
Sbjct: 2   NKNHRGYARQDRVKEQIMRELAELVRRGLKDPRA---GFITINDVEVTRDYSHATVYYTV 58

Query: 63  PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             D + D    AL     F+R  + + ++  R +PEL F+YD SL+    ++ L+     
Sbjct: 59  LDDATRDITAEALEHAKGFLRSELSKRIKLFR-IPELHFQYDQSLERGMSISHLIE---- 113

Query: 123 PVALEK 128
            VA EK
Sbjct: 114 QVAAEK 119


>gi|282848831|ref|ZP_06258224.1| ribosome-binding factor A [Veillonella parvula ATCC 17745]
 gi|294793602|ref|ZP_06758739.1| ribosome-binding factor A [Veillonella sp. 3_1_44]
 gi|282581485|gb|EFB86875.1| ribosome-binding factor A [Veillonella parvula ATCC 17745]
 gi|294455172|gb|EFG23544.1| ribosome-binding factor A [Veillonella sp. 3_1_44]
          Length = 118

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 43  SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +I++V ++ DLR AT+Y+SL   D   +  + AL      IR  +G+ L+ LR++P + F
Sbjct: 34  TITDVHVTGDLREATIYVSLFGSDKEKEDTLIALKHAAGHIRTELGKVLK-LRHIPSITF 92

Query: 102 RYDTSLQSYWKLNALM 117
             DTSL     + +L+
Sbjct: 93  DKDTSLDYSMHIESLL 108


>gi|229586718|ref|YP_002845219.1| ribosome-binding factor A [Rickettsia africae ESF-5]
 gi|259552067|sp|C3PNG6|RBFA_RICAE RecName: Full=Ribosome-binding factor A
 gi|228021768|gb|ACP53476.1| Ribosome-binding factor A [Rickettsia africae ESF-5]
          Length = 120

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     +S R  ++   +  AL+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 1   MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDTRLFDCPLTITKVIVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ D ++ ALN +   IR  I   + N+++ P++RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFYYDHGFDNAIKVAHLL 117


>gi|89101191|ref|ZP_01174022.1| ribosome-binding factor A [Bacillus sp. NRRL B-14911]
 gi|89084100|gb|EAR63270.1| ribosome-binding factor A [Bacillus sp. NRRL B-14911]
          Length = 112

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           +++++V ++ DL+ ATVYIS+  D    +  +  L     FIR  IG+ +R LR  PE+ 
Sbjct: 21  VTVTDVAVTGDLQQATVYISVLGDEEKRENTLKGLAKAKGFIRSEIGQRIR-LRKTPEII 79

Query: 101 FRYDTSLQSYWKLNALM 117
           F +D S+    +++ L+
Sbjct: 80  FEFDESIDYGNRIDTLL 96


>gi|323495470|ref|ZP_08100545.1| ribosome-binding factor A [Vibrio sinaloensis DSM 21326]
 gi|323319467|gb|EGA72403.1| ribosome-binding factor A [Vibrio sinaloensis DSM 21326]
          Length = 135

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +P+  + AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 60  EQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFHYDNTLVEGMRMSNLV 111


>gi|261879008|ref|ZP_06005435.1| ribosome-binding factor A [Prevotella bergensis DSM 17361]
 gi|270334392|gb|EFA45178.1| ribosome-binding factor A [Prevotella bergensis DSM 17361]
          Length = 111

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R +   ++S+++V +S DL + T Y+S+        ++  +  N K IR  +G+ +RN
Sbjct: 24  QTRQMKGVLVSVTKVRISPDLSICTAYLSIFPSEKGSELLDNIKANEKTIRYELGKRVRN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL     ++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYSEHIDELL 109


>gi|3914553|sp|O34272|RBFA_YEREN RecName: Full=Ribosome-binding factor A
 gi|2462713|emb|CAA71698.1| yhbB [Yersinia enterocolitica]
          Length = 133

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 11/115 (9%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----LPLDV 66
           R+ RV +E++  +  +IL  E +D  +   + ++S + +S DL  A V+++    L  + 
Sbjct: 4   RSQRVSQEMQKEI-ALILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVLTDNA 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            PD     I AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DPDTAKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVT 114


>gi|146328987|ref|YP_001208966.1| ribosome-binding factor A [Dichelobacter nodosus VCS1703A]
 gi|166218436|sp|A5EWY8|RBFA_DICNV RecName: Full=Ribosome-binding factor A
 gi|146232457|gb|ABQ13435.1| ribosome-binding factor A [Dichelobacter nodosus VCS1703A]
          Length = 122

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 6/110 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  R+GE++R  L   +++           ++S + V ++ DL  A VY++  LD   +R
Sbjct: 7   RTRRIGEQMRRDLAQALVDIVHHPHA---SLLSFTAVHLTRDLSFAKVYVTHVLDNEEER 63

Query: 71  --VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             +++ LN      R  + ++L ++R VPEL+F YD S++   ++  L+ 
Sbjct: 64  SELVAELNAKAGQFRHYLAKNL-SIRKVPELQFYYDQSVEYGARMEQLLT 112


>gi|89095213|ref|ZP_01168136.1| Ribosome-binding factor A [Oceanospirillum sp. MED92]
 gi|89080510|gb|EAR59759.1| Ribosome-binding factor A [Oceanospirillum sp. MED92]
          Length = 135

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 10/113 (8%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  R+ ++++  L  +I   +F+ +     ++++S V +S DL  A VYI+ LPL+   +
Sbjct: 7   RTERIADQLQRELAQLI---QFEIKDPRLGMVTVSYVKVSKDLGFADVYITVLPLNGKDE 63

Query: 70  -----RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                  +  LN    F+RG + R+++ LR +P+LRF +D +++    L+ L+
Sbjct: 64  AEAIVDSLKVLNSAAGFLRGELARNIK-LRIMPQLRFHFDETIERGRHLHHLI 115


>gi|134095609|ref|YP_001100684.1| ribosome-binding factor A [Herminiimonas arsenicoxydans]
 gi|172044150|sp|A4G7S6|RBFA_HERAR RecName: Full=Ribosome-binding factor A
 gi|133739512|emb|CAL62563.1| ribosome-binding factor A [Herminiimonas arsenicoxydans]
          Length = 128

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 61/109 (55%), Gaps = 6/109 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R LRV ++++  L  ++   E +D  +   +I+I+EV ++ D   A V+ ++  D   + 
Sbjct: 11  RGLRVADQIQRDLSEIVAF-ELKDPRVG--MITITEVQVTPDYAHAKVFFTMLSDNKDEI 67

Query: 70  -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              +S L+    +IRG++GR L ++  +PEL F +DTS     +++ L+
Sbjct: 68  KNTVSGLSAASGYIRGQLGRRL-SIHTLPELHFVHDTSTARGIEMSKLI 115


>gi|260910466|ref|ZP_05917135.1| ribosome-binding factor A [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635412|gb|EEX53433.1| ribosome-binding factor A [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 111

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   ++S++   +S DL + T Y+S+      + ++  +  NIK IR  +G  + N
Sbjct: 24  QTRMMHGVMVSVTRTRVSPDLSICTAYLSVFPSEKGEELLKNIESNIKTIRYELGTRVHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYIERIDELL 109


>gi|37199640|dbj|BAC95471.1| ribosome-binding factor A [Vibrio vulnificus YJ016]
          Length = 148

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 6/114 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K+  R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++     
Sbjct: 20  KDFSRTQRVSQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 76

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+ 
Sbjct: 77  EQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLVT 129


>gi|317121858|ref|YP_004101861.1| ribosome-binding factor A [Thermaerobacter marianensis DSM 12885]
 gi|315591838|gb|ADU51134.1| ribosome-binding factor A [Thermaerobacter marianensis DSM 12885]
          Length = 177

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 6/109 (5%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
           +R  RV E +R AL  ++     +D  +   +  ++ V +S D+R A V IS +  D + 
Sbjct: 4   KRRERVAEAIREALAEIL--RRVKDPRVG--MAGVTSVELSPDMRHARVRISVIGDDETR 59

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            R +  L     FIR  +GR++R LR+VPEL FR D S     ++  L+
Sbjct: 60  RRTMEGLERARGFIRSELGRAIR-LRHVPELDFRLDESAAYSVRIAQLL 107


>gi|194476765|ref|YP_002048944.1| ribosome-binding factor A [Paulinella chromatophora]
 gi|171191772|gb|ACB42734.1| ribosome-binding factor A [Paulinella chromatophora]
          Length = 124

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGR 85
           ++++  +DR + + ++S++EV ++ DL+   +++S+   +    +V++ L     F+RG 
Sbjct: 21  LISSSIRDRRVHQGMMSVTEVKLAGDLQHCKIFVSIFGSEEERHQVLTGLQSASAFVRGE 80

Query: 86  IGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +GR L+ LR  PE+ F  D  ++    +  L+
Sbjct: 81  LGRRLK-LRRTPEIVFELDRGIEKGTSVIGLL 111


>gi|33860672|ref|NP_892233.1| ribosome-binding factor A [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|39931780|sp|Q7V3G3|RBFA_PROMP RecName: Full=Ribosome-binding factor A
 gi|33633614|emb|CAE18571.1| Ribosome-binding factor A [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 132

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 24  MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNIKFI 82
           + +IL N+ ++ L+  + I+IS++ +S DL+   +YI S   +     ++  LN    +I
Sbjct: 18  ITLILQNDLENDLLRSNFINISKIELSGDLQFCKIYITSTAEEAIRKEIVEELNLAKTYI 77

Query: 83  RGRIGRSLRNLRYVPELRFRYDTSLQ 108
           R  +G+ +  +R VPE+ F+ DT L+
Sbjct: 78  RHTLGQRIE-MRRVPEMTFKDDTVLE 102


>gi|330444478|ref|YP_004377464.1| ribosome-binding factor A [Chlamydophila pecorum E58]
 gi|328807588|gb|AEB41761.1| ribosome-binding factor A [Chlamydophila pecorum E58]
          Length = 119

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD- 65
            +RR  +V   +R A+  VIL +  Q   IS   I+++ V +S DLR A VY+S +P + 
Sbjct: 3   GNRRIQKVNSLLREAIAEVILKD-VQHPKISNHWITVTRVSLSKDLRFAQVYVSIMPQEK 61

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
           V+    + AL  +  FI  R  + +  L+Y PEL F  +
Sbjct: 62  VTIQETLEALKVSAGFIACRTSKKVV-LKYFPELNFHLE 99


>gi|28899229|ref|NP_798834.1| ribosome-binding factor A [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838296|ref|ZP_01990963.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ3810]
 gi|260362208|ref|ZP_05775192.1| ribosome-binding factor A [Vibrio parahaemolyticus K5030]
 gi|260879076|ref|ZP_05891431.1| ribosome-binding factor A [Vibrio parahaemolyticus AN-5034]
 gi|260897747|ref|ZP_05906243.1| ribosome-binding factor A [Vibrio parahaemolyticus Peru-466]
 gi|260900803|ref|ZP_05909198.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ4037]
 gi|31076895|sp|Q87M03|RBFA_VIBPA RecName: Full=Ribosome-binding factor A
 gi|28807453|dbj|BAC60718.1| ribosome-binding factor A [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748285|gb|EDM59144.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ3810]
 gi|308088966|gb|EFO38661.1| ribosome-binding factor A [Vibrio parahaemolyticus Peru-466]
 gi|308089597|gb|EFO39292.1| ribosome-binding factor A [Vibrio parahaemolyticus AN-5034]
 gi|308108183|gb|EFO45723.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ4037]
 gi|308111465|gb|EFO49005.1| ribosome-binding factor A [Vibrio parahaemolyticus K5030]
 gi|328474235|gb|EGF45040.1| ribosome-binding factor A [Vibrio parahaemolyticus 10329]
          Length = 131

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
            K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   SKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 59  GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111


>gi|299534738|ref|ZP_07048068.1| ribosome-binding factor A [Lysinibacillus fusiformis ZC1]
 gi|298729826|gb|EFI70371.1| ribosome-binding factor A [Lysinibacillus fusiformis ZC1]
          Length = 113

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
           S R+ RV E+++  L   IL  + +D  +    ++++ V ++ DL+ AT+YI SL  +  
Sbjct: 2   SLRSNRVAEQMKKEL-GDILGRKIKDPRVG--FVTVTGVEVTGDLQQATIYITSLGNERE 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  + AL     FIR  IG  +R LR  PEL F +D+S++   ++++L+
Sbjct: 59  REETLKALVKASGFIRSEIGSRIR-LRRTPELIFEFDSSIEYGNRIDSLL 107


>gi|229592635|ref|YP_002874754.1| ribosome-binding factor A [Pseudomonas fluorescens SBW25]
 gi|259552059|sp|C3K258|RBFA_PSEFS RecName: Full=Ribosome-binding factor A
 gi|229364501|emb|CAY52349.1| ribosome-binding factor A [Pseudomonas fluorescens SBW25]
          Length = 131

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A ++I++    
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQD 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S + +   I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  SAEEIAQSIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|86605483|ref|YP_474246.1| ribosome-binding factor A [Synechococcus sp. JA-3-3Ab]
 gi|123507268|sp|Q2JW85|RBFA_SYNJA RecName: Full=Ribosome-binding factor A
 gi|86554025|gb|ABC98983.1| ribosome-binding factor A [Synechococcus sp. JA-3-3Ab]
          Length = 149

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
            +RR  RV E ++  +  ++L+ E +D  +   ++SI +V +S DL+ A +++S+  D  
Sbjct: 3   TARRVARVAELIKREVSQILLS-EIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDEA 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
           +  + +  L     F+R  IG+ L  LR VP + F  D SL+   ++ AL+   + P   
Sbjct: 62  AQQQTMEGLASATPFVRREIGQRL-GLRRVPTVVFLQDRSLERGSRVLALLNQLRQPAEA 120

Query: 127 EK 128
           ++
Sbjct: 121 QQ 122


>gi|17227559|ref|NP_484107.1| ribosome-binding factor A [Nostoc sp. PCC 7120]
 gi|20978596|sp|Q8Z0M8|RBFA_ANASP RecName: Full=Ribosome-binding factor A
 gi|17135041|dbj|BAB77587.1| ribosome binding facror A [Nostoc sp. PCC 7120]
          Length = 133

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
            +RR  RV E ++  +  +++N    DR +   ++S+++V +S DL+ A +Y+S+   + 
Sbjct: 3   TNRRVSRVAELIKREVSQMLINGIKDDR-VGTGMVSVTDVDVSGDLQHAKIYVSIYGTEE 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +    ++ L     F+R  +G  +R LR  PE+ F  D S++   K+  L+
Sbjct: 62  AKAETMAGLKSATGFVRSELGARVR-LRRTPEVTFIEDRSIERGTKVLTLL 111


>gi|116071460|ref|ZP_01468728.1| Ribosome-binding factor A [Synechococcus sp. BL107]
 gi|116065083|gb|EAU70841.1| Ribosome-binding factor A [Synechococcus sp. BL107]
          Length = 134

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PL 64
             RR  RV   +R     +++N   +D  + + ++SI+ V ++ DL+   +++S+   P 
Sbjct: 3   QGRRVERVAALIRKETSELLING-IRDERVHKGMVSITSVEVAGDLQHCKIFVSIFGEPN 61

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D   + V+  L     ++RG +GR L+ +R  PE++F+ D  L+    +  L+
Sbjct: 62  D--QNEVMEGLEAASGYLRGELGRRLQ-MRRAPEVKFQLDRGLEKGTSVLGLL 111


>gi|256821532|ref|YP_003145495.1| ribosome-binding factor A [Kangiella koreensis DSM 16069]
 gi|256795071|gb|ACV25727.1| ribosome-binding factor A [Kangiella koreensis DSM 16069]
          Length = 122

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 9/111 (8%)

Query: 11  RALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
           RA RV ++++  L  V+L  E +D RL    ++++S V ++ DL+ A V+++ L  D   
Sbjct: 5   RAKRVADQIQRDL-AVLLQREMKDPRL---GIVTVSGVEVTSDLQNAKVFVTFLGKDEEQ 60

Query: 69  D--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  + +  L     F+R ++ +S+R +R VP LRF +D S+    K+ +L+
Sbjct: 61  EIKQALEVLTGAAGFLRSQLAKSIR-MRSVPSLRFLFDKSIVEGQKMTSLI 110


>gi|300113658|ref|YP_003760233.1| ribosome-binding factor A [Nitrosococcus watsonii C-113]
 gi|299539595|gb|ADJ27912.1| ribosome-binding factor A [Nitrosococcus watsonii C-113]
          Length = 127

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE ++  L   +L  E +D  +   ++++S V +S D R A VY++ L  +    
Sbjct: 7   RARRVGELLQRELAR-LLQAELKDPRVK--LVTVSHVRVSPDFRQAKVYVTFLGKEEDTQ 63

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           R ++ LN    F++  + + +  LR VP L+F YD S++   +L+AL+
Sbjct: 64  RQLTILNKATGFLQHGLSQRV-ELRVVPRLQFVYDDSIKRGRRLSALI 110


>gi|255543903|ref|XP_002513014.1| Ribosome-binding factor A, putative [Ricinus communis]
 gi|223548025|gb|EEF49517.1| Ribosome-binding factor A, putative [Ricinus communis]
          Length = 221

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEF------------QDRLISRDVISISEVCMSVDLRV 55
           N RR   V ++++  L  ++L ++              D+ +S  + +IS+V +S DL+V
Sbjct: 59  NPRRVKMVAKQIQRELSDMLLTDKVLQYAILPEAALGADKYLSS-LTTISDVEVSTDLQV 117

Query: 56  ATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             VY+S+  D     V I+ L    K++R  +GR ++ LR  PE+RF  D S +
Sbjct: 118 VKVYVSVFGDDRGKEVAIAGLKAKAKYVRSELGRRMK-LRLTPEIRFIEDESFE 170


>gi|139436988|ref|ZP_01771148.1| Hypothetical protein COLAER_00122 [Collinsella aerofaciens ATCC
           25986]
 gi|133776635|gb|EBA40455.1| Hypothetical protein COLAER_00122 [Collinsella aerofaciens ATCC
           25986]
          Length = 136

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 9/124 (7%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K ++   R+GE++R  L +++L      RL   D+++++ V ++VD   A VY+S   D 
Sbjct: 2   KQTQATRRLGEQLREKLGYILLFEVSDPRL---DLVTLTAVEVAVDRSFARVYVS--CDA 56

Query: 67  SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN-ALMCLPKIPV 124
           S  D V+ AL      IR  + RSL + R  PEL FR D S     ++  AL  +P   +
Sbjct: 57  SRYDEVMEALASAKGRIRSLLARSL-DWRVTPELDFRIDRSTDEAERITRALENVPAT-L 114

Query: 125 ALEK 128
           A+EK
Sbjct: 115 AIEK 118


>gi|27365058|ref|NP_760586.1| ribosome-binding factor A [Vibrio vulnificus CMCP6]
 gi|161486605|ref|NP_935500.2| ribosome-binding factor A [Vibrio vulnificus YJ016]
 gi|320155442|ref|YP_004187821.1| ribosome-binding factor A [Vibrio vulnificus MO6-24/O]
 gi|29427705|sp|Q8DBV9|RBFA_VIBVU RecName: Full=Ribosome-binding factor A
 gi|39931703|sp|Q7MI10|RBFA_VIBVY RecName: Full=Ribosome-binding factor A
 gi|27361204|gb|AAO10113.1| ribosome-binding factor A [Vibrio vulnificus CMCP6]
 gi|319930754|gb|ADV85618.1| ribosome-binding factor A [Vibrio vulnificus MO6-24/O]
          Length = 131

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K+  R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++     
Sbjct: 3   KDFSRTQRVSQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 60  EQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLV 111


>gi|310641597|ref|YP_003946355.1| ribosome-binding factor a [Paenibacillus polymyxa SC2]
 gi|309246547|gb|ADO56114.1| Ribosome-binding factor A [Paenibacillus polymyxa SC2]
          Length = 116

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RVGE+++  L  +I   E +D  I    I+++ V ++ DL  A VY+S L  +    
Sbjct: 5   RTGRVGEQIKKELSLLI-QTELKDPRIG--FITVTGVDVTNDLSQAKVYLSVLGDEEQKT 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + AL+    ++R  +G+ +R LR++PEL F+ D S+    ++  L+ 
Sbjct: 62  SSLKALDKANGYLRSELGKRIR-LRHIPELIFKIDESIAYGSRIEKLLS 109


>gi|313906210|ref|ZP_07839556.1| ribosome-binding factor A [Eubacterium cellulosolvens 6]
 gi|313468940|gb|EFR64296.1| ribosome-binding factor A [Eubacterium cellulosolvens 6]
          Length = 129

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+ E V+  L  +I N+    R+    + S++E  ++ DL+   V IS L  +
Sbjct: 3   KNSVKNTRINEAVKEELSSIIRNSVKDPRIAM--MTSVTEAIVAPDLKTCKVMISVLGDE 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            +    ++ L  + KFIR  +   L NLR  PEL FR D S++
Sbjct: 61  KAKSDTMTGLRSSAKFIRHELAVRL-NLRNTPELTFRLDESIE 102


>gi|148240554|ref|YP_001225941.1| ribosome-binding factor A [Synechococcus sp. WH 7803]
 gi|166219413|sp|A5GNX9|RBFA_SYNPW RecName: Full=Ribosome-binding factor A
 gi|147849093|emb|CAK24644.1| Ribosome-binding factor A [Synechococcus sp. WH 7803]
          Length = 140

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
            RR  RV   +R     ++++    DR + + +ISI++V +S DL+   +++S+  D  P
Sbjct: 4   GRRVERVAALIRKETSELLMHGIRDDR-VHQGLISITQVDVSGDLQHCKIFVSVLAD--P 60

Query: 69  D---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +   +V+  L     F+RG +GR L+ +R  PE+ F  D  L+    +  L+
Sbjct: 61  EGRAQVMEGLQAASSFLRGELGRRLQ-MRRAPEVVFHLDRGLEKGASVLGLL 111


>gi|59711094|ref|YP_203870.1| ribosome-binding factor A [Vibrio fischeri ES114]
 gi|71648821|sp|Q5E7L4|RBFA_VIBF1 RecName: Full=Ribosome-binding factor A
 gi|59479195|gb|AAW84982.1| 30s ribosome binding factor [Vibrio fischeri ES114]
          Length = 135

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PL 64
           K   R  RV ++++  L  V+L  E +D  I   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVSQQLQKEL-AVMLQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFFCVG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + +P+  ++AL  +   +R  +G+ +R LR  PE+RF YD +L    +++ L+ 
Sbjct: 60  EQTPESSLAALKEHEPSLRMMLGKRIR-LRLTPEIRFTYDNTLVEGMRMSNLVT 112


>gi|300871728|ref|YP_003786601.1| ribosome-binding factor A [Brachyspira pilosicoli 95/1000]
 gi|300689429|gb|ADK32100.1| ribosome binding factor A [Brachyspira pilosicoli 95/1000]
          Length = 122

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
           S R LRV E ++  L  ++L  E +D  I  ++++I+ +  + DL+ A VY  + LD S 
Sbjct: 3   SHRILRVNENIKQILSTILLR-EIEDPRIKNNLVTITRIDTAKDLKEAKVYF-VCLDPSK 60

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
            + V++ LN     I   + + L  +RYVP L F YD +L    K+
Sbjct: 61  QNEVLNGLNSAKGVIFSYLRKQL-TIRYVPNLTFYYDKTLMETNKV 105


>gi|86607701|ref|YP_476463.1| ribosome-binding factor A [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123504067|sp|Q2JPS6|RBFA_SYNJB RecName: Full=Ribosome-binding factor A
 gi|86556243|gb|ABD01200.1| ribosome-binding factor A [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 144

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
            +RR  RV E ++  +  ++L+ E +D  +   ++SI +V +S DL+ A +++S+  D  
Sbjct: 3   TARRVARVAELIKREVSQILLS-EIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDET 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  + +  L     F+R  IG+ L +LR VP + F  D SL+   ++ AL+
Sbjct: 62  AQHQAMEGLAAATPFVRREIGQRL-SLRRVPTVVFLQDRSLERGSRVLALL 111


>gi|317504480|ref|ZP_07962458.1| ribosome-binding factor A [Prevotella salivae DSM 15606]
 gi|315664423|gb|EFV04112.1| ribosome-binding factor A [Prevotella salivae DSM 15606]
          Length = 111

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R +   ++S++ V +S DL + T Y+S+      + ++  +  N K IR  +G  +RN
Sbjct: 24  QTRQMHGVMVSVTRVKISPDLSICTAYLSIFPSEKSEEILKNVTANTKTIRYDLGCRVRN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYIERIDELL 109


>gi|313901528|ref|ZP_07834974.1| ribosome-binding factor A [Thermaerobacter subterraneus DSM 13965]
 gi|313468206|gb|EFR63674.1| ribosome-binding factor A [Thermaerobacter subterraneus DSM 13965]
          Length = 139

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 6/100 (6%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           +++R  RV + ++ AL  ++     +D  +   + +++ V +S DLR A V IS+  D +
Sbjct: 8   SAKRHQRVADAIQEALAEIL--RRVKDPRVG--MAAVTGVELSPDLRHARVRISVIGDEA 63

Query: 68  P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
              R +  L     FIR  +GR++R LR+VPEL FR D S
Sbjct: 64  ERQRTMEGLEHARGFIRSELGRAVR-LRHVPELDFRLDDS 102


>gi|300725871|ref|ZP_07059335.1| ribosome-binding factor A [Prevotella bryantii B14]
 gi|299776859|gb|EFI73405.1| ribosome-binding factor A [Prevotella bryantii B14]
          Length = 111

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
           ++S++ V +S DL + T Y+S+      + +++ +N N K IR  +G+ + + LR VPEL
Sbjct: 32  MVSVTRVKVSPDLGICTAYLSIFPSEKGEELMANINSNEKSIRYELGKRVGKQLRIVPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           RF  D SL    +++ L+
Sbjct: 92  RFFIDDSLDYIERIDELL 109


>gi|302389794|ref|YP_003825615.1| ribosome-binding factor A [Thermosediminibacter oceani DSM 16646]
 gi|302200422|gb|ADL07992.1| ribosome-binding factor A [Thermosediminibacter oceani DSM 16646]
          Length = 119

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 8/110 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RV  E++ A+  +I NN+ +D  I + +IS+++V +S DLR A +++S+  + S  +
Sbjct: 5   RTDRVSGEIKKAVSEII-NNDLKDPRI-QGLISVTKVEVSKDLRHAKIFLSIYGEESVKQ 62

Query: 71  VISALNCNIKFIRGRIGRSLRN---LRYVPELRFRYDTSLQSYWKLNALM 117
             +AL   IK   G I R L N   L+++P+L F+ D S++    ++ L+
Sbjct: 63  --NALEG-IKNAEGFIRRELANRIRLKFIPQLNFKLDDSIEYGIHISKLL 109


>gi|115466270|ref|NP_001056734.1| Os06g0137600 [Oryza sativa Japonica Group]
 gi|55296456|dbj|BAD68652.1| ribosome-binding factor A protein-like [Oryza sativa Japonica
           Group]
 gi|55296997|dbj|BAD68472.1| ribosome-binding factor A protein-like [Oryza sativa Japonica
           Group]
 gi|113594774|dbj|BAF18648.1| Os06g0137600 [Oryza sativa Japonica Group]
 gi|125553968|gb|EAY99573.1| hypothetical protein OsI_21548 [Oryza sativa Indica Group]
 gi|125595983|gb|EAZ35763.1| hypothetical protein OsJ_20053 [Oryza sativa Japonica Group]
 gi|215701451|dbj|BAG92875.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704652|dbj|BAG94280.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215765427|dbj|BAG87124.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           + +I++V +S DL+V  VY+S+  D    +V I+ L    K++R +IG+ ++ LR  PE+
Sbjct: 87  LTTIADVELSNDLQVCKVYVSVFGDERGKKVAIAGLKAKTKYVRSQIGKRMK-LRLTPEI 145

Query: 100 RFRYDTSLQSYWKLNALM 117
           RF  D S++   ++ A++
Sbjct: 146 RFIEDESMERGSRILAIL 163


>gi|169827170|ref|YP_001697328.1| ribosome-binding factor A [Lysinibacillus sphaericus C3-41]
 gi|168991658|gb|ACA39198.1| Ribosome-binding factor A [Lysinibacillus sphaericus C3-41]
          Length = 113

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
           S R+ RV E+++  L   IL  + +D  +    ++++ V ++ DL+ AT+YI SL  +  
Sbjct: 2   SLRSNRVAEQMKKEL-GDILGRKIKDPRVG--FVTVTGVEVTGDLQQATIYITSLGNERE 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  + AL     FIR  IG  +R LR  PEL F +D+S++   +++ L+
Sbjct: 59  REETLKALVKASGFIRSEIGSRIR-LRRTPELIFEFDSSIEYGNRIDTLL 107


>gi|325286200|ref|YP_004261990.1| Ribosome-binding factor A [Cellulophaga lytica DSM 7489]
 gi|324321654|gb|ADY29119.1| Ribosome-binding factor A [Cellulophaga lytica DSM 7489]
          Length = 130

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S+V ++ DL +A VYIS+    + D ++  +  N   I+  + +  +N LR VPEL
Sbjct: 34  LISVSKVVVTTDLSIAKVYISIFPHKNADELLEGIKSNQPLIKHELAQRTKNQLRRVPEL 93

Query: 100 RFRYDTSLQ 108
            F  D SL+
Sbjct: 94  LFFIDDSLE 102


>gi|28871623|ref|NP_794242.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213966646|ref|ZP_03394797.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato T1]
 gi|301383156|ref|ZP_07231574.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato Max13]
 gi|302063409|ref|ZP_07254950.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato K40]
 gi|302133782|ref|ZP_07259772.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|32171593|sp|Q87WQ6|RBFA_PSESM RecName: Full=Ribosome-binding factor A
 gi|28854875|gb|AAO57937.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213928496|gb|EEB62040.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato T1]
 gi|330963976|gb|EGH64236.1| ribosome-binding factor A [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|331016649|gb|EGH96705.1| ribosome-binding factor A [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 138

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A ++++ +  D
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 66  VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + D  + I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  NAEDIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|260775408|ref|ZP_05884305.1| ribosome-binding factor A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608589|gb|EEX34754.1| ribosome-binding factor A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 137

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
            K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   SKEFSRTQRVSQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +P+  + AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 59  GEQTPESCLKALREHEVHIRMMLGKRIR-LRLTPEIRFEYDNTLVEGMRMSNLV 111


>gi|85712991|ref|ZP_01044029.1| ribosome-binding factor A [Idiomarina baltica OS145]
 gi|85693160|gb|EAQ31120.1| ribosome-binding factor A [Idiomarina baltica OS145]
          Length = 125

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 10/107 (9%)

Query: 17  EEVRSAL---MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-- 71
           E VR  L   + +IL  E +D  +S  ++++S+V +S DL  A V+++   D   D+V  
Sbjct: 9   ERVRHQLQREIAMILQREVKDPRVS--MVTVSDVEVSRDLAYAKVFVTFLHD-DDDQVKA 65

Query: 72  -ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  LN    FIR  +G+ ++  R VPEL+F++D SL    +++ L+
Sbjct: 66  GLKVLNQASGFIRSLLGKRIK-ARVVPELKFQHDGSLNEGIRMSRLV 111


>gi|330807484|ref|YP_004351946.1| ribosome-binding factor A; RBFA, ribosome-binding factor A
           superfamily [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375592|gb|AEA66942.1| ribosome-binding factor A; RBFA, Ribosome-binding factor A
           superfamily [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 133

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A ++I++    
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQD 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S + +   I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  SAEEIAQSIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|157828480|ref|YP_001494722.1| ribosome-binding factor A [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933198|ref|YP_001649987.1| ribosome-binding factor A [Rickettsia rickettsii str. Iowa]
 gi|166219401|sp|A8GS39|RBFA_RICRS RecName: Full=Ribosome-binding factor A
 gi|189039553|sp|B0BXK5|RBFA_RICRO RecName: Full=Ribosome-binding factor A
 gi|157800961|gb|ABV76214.1| ribosome-binding factor A [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908285|gb|ABY72581.1| hypothetical protein RrIowa_0723 [Rickettsia rickettsii str. Iowa]
          Length = 120

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     +S R  ++   +  AL+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 1   MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTTDLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ D ++ ALN +   IR  I   + ++++ P++RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-HMKFSPDIRFHYDHGFDNAIKVAHLL 117


>gi|157803804|ref|YP_001492353.1| ribosome-binding factor A [Rickettsia canadensis str. McKiel]
 gi|157785067|gb|ABV73568.1| ribosome-binding factor A [Rickettsia canadensis str. McKiel]
          Length = 144

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     N+ R  ++   +   L+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 16  MKKLTKTNAHRQQKLASIINEVLIEILRRGKMLDIRLFNCPLAITKVIVTADLKIANCYF 75

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ D ++ ALN +   IR  +   + N+++ PE+RF YD    +  K+  L+
Sbjct: 76  -LPFNTKLTIDDIMDALNNSKNAIRNFVTNKI-NMKFSPEIRFHYDHGFDNAIKVEKLL 132


>gi|332981615|ref|YP_004463056.1| ribosome-binding factor A [Mahella australiensis 50-1 BON]
 gi|332699293|gb|AEE96234.1| ribosome-binding factor A [Mahella australiensis 50-1 BON]
          Length = 122

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           R  R+ EE++  +  +I  NE +D  +   + S+++V ++ DL+ A VY+S+  D     
Sbjct: 5   RLARISEELKREISDII-RNELKDPRVPM-MTSVTKVEITNDLKYAKVYVSVLGDEDTVK 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                LN    F+R  +G  +R LRY P++ F  DTS++    ++ L+
Sbjct: 63  NAFDGLNSAAGFVRKEVGSRIR-LRYTPQIIFVRDTSIEYGAHISKLL 109


>gi|260885919|ref|ZP_05736166.2| ribosome-binding factor A [Prevotella tannerae ATCC 51259]
 gi|260851001|gb|EEX70870.1| ribosome-binding factor A [Prevotella tannerae ATCC 51259]
          Length = 134

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V +S DL V   Y+S+      + +++ +N N+K +R  +G+ +R+ LR +PEL
Sbjct: 55  LVSVSRVRISPDLSVCRGYLSVFPSERGEEIVANINANVKTVRFELGKRVRHQLRIIPEL 114

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL     ++ L+
Sbjct: 115 KFFIDDSLDYIEHIDELL 132


>gi|197294653|ref|YP_001799194.1| Ribosome-binding factor A [Candidatus Phytoplasma australiense]
 gi|171853980|emb|CAM11943.1| Ribosome-binding factor A [Candidatus Phytoplasma australiense]
          Length = 114

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 9/104 (8%)

Query: 12  ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
           A R+   ++  L  V++N   QD  I    I++++V ++ DL  A VY ++  D SPD +
Sbjct: 6   AERMASAIKKEL--VLINTIIQDEQIG--YINLTDVQVTKDLSFANVYYTILSD-SPDIL 60

Query: 72  ISALNC---NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
             A N    N   IR  + + ++N R +P+L F+YD SL SY +
Sbjct: 61  KLASNAIEENKVVIRMELAKKIKNFRKIPDLIFKYDKSL-SYGR 103


>gi|123965361|ref|YP_001010442.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9515]
 gi|166219389|sp|A2BU74|RBFA_PROM5 RecName: Full=Ribosome-binding factor A
 gi|123199727|gb|ABM71335.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9515]
          Length = 132

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 24  MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFI 82
           + +IL N+ ++ L+  + ISIS++ ++ DL+   +YIS   + +  + +I  LN    +I
Sbjct: 18  ITLILQNDLENDLLRSNFISISKIEVTGDLQFCKIYISSAAEGNIRKEIIENLNLAKNYI 77

Query: 83  RGRIGRSLRNLRYVPELRFRYDTSL 107
           +  +G+ +  +R VPEL F+ DT+L
Sbjct: 78  KHILGQRIE-MRRVPELTFKDDTAL 101


>gi|77457007|ref|YP_346512.1| ribosome-binding factor A [Pseudomonas fluorescens Pf0-1]
 gi|123606004|sp|Q3KI83|RBFA_PSEPF RecName: Full=Ribosome-binding factor A
 gi|77381010|gb|ABA72523.1| ribosome-binding factor A [Pseudomonas fluorescens Pf0-1]
          Length = 133

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A ++I+ +  D
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQD 59

Query: 66  VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + D  + I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  NAEDIAQSIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|317046742|ref|YP_004114390.1| ribosome-binding factor A [Pantoea sp. At-9b]
 gi|316948359|gb|ADU67834.1| ribosome-binding factor A [Pantoea sp. At-9b]
          Length = 135

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   ++++S V +S DL  A V+++   D 
Sbjct: 3   KEFGRPQRVSQELQKEI-AIILQREIKDPRLGM-MVTVSGVEVSRDLAYAKVFVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + V   + AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEEAVKNGLKALKEASGYIRTLVGKAMR-LRIVPELTFFYDNSLIEGMRMSNLVT 114


>gi|223936319|ref|ZP_03628231.1| ribosome-binding factor A [bacterium Ellin514]
 gi|223894837|gb|EEF61286.1| ribosome-binding factor A [bacterium Ellin514]
          Length = 125

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 41  VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           +I+++EV +S DL  ATV+I  L  D    +  + LN + K I+G +G+++  L+Y P L
Sbjct: 32  LITVNEVGVSSDLHSATVFIGILGTDQQKKKGFAQLNHHRKRIQGLVGQAVI-LKYTPTL 90

Query: 100 RFRYDTSLQSYWKL 113
           RF  D S+    K+
Sbjct: 91  RFVLDESIAEGNKV 104


>gi|330958048|gb|EGH58308.1| ribosome-binding factor A [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 138

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A ++++ +  D
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 66  VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + D  + I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  NAEDIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|88802041|ref|ZP_01117569.1| putative ribosome-binding factor A [Polaribacter irgensii 23-P]
 gi|88782699|gb|EAR13876.1| putative ribosome-binding factor A [Polaribacter irgensii 23-P]
          Length = 131

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S+V ++ DL VA VY+S+    + D ++  +  N   IR  + +  RN LR +PEL
Sbjct: 34  IISVSKVHVTADLGVAKVYLSIFPSENRDEIVKGVQSNTPLIRHEMAKRTRNQLRRMPEL 93

Query: 100 RFRYDTSL 107
            F  D +L
Sbjct: 94  LFFGDDTL 101


>gi|258591352|emb|CBE67651.1| Ribosome-binding factor A [NC10 bacterium 'Dutch sediment']
          Length = 119

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
             RRA RVG  ++  +  +IL +    R+      +++ V +S DL+ A VYI+  +   
Sbjct: 2   QGRRADRVGTLIQEEISRLILQSVKDPRV---RCATVTRVRVSDDLQHAKVYIA-SMGGD 57

Query: 68  PDRVISAL---NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +R   AL        F+RG +GR L  LRY+PEL F  D SL+    L  L 
Sbjct: 58  KERCQEALIGLKSAAGFLRGELGRRL-CLRYIPELLFSLDDSLEQELHLAELF 109


>gi|254496142|ref|ZP_05109040.1| ribosome-binding factor A [Legionella drancourtii LLAP12]
 gi|254354629|gb|EET13266.1| ribosome-binding factor A [Legionella drancourtii LLAP12]
          Length = 123

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 8/113 (7%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           +N +R  R+ E ++  L  +I       RL     ++IS V ++ DL  A +Y ++   +
Sbjct: 3   QNFKRTDRIAEMIQRKLAQIIPQEVKDPRL--NGFVTISAVKVAADLGHAKIYFTV---L 57

Query: 67  SPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + D+ ++A  LN    ++R  + RS+  LR VP+L F YD S++   +L+ L+
Sbjct: 58  NADKKLAATILNAAASYLRSALARSI-TLRTVPQLHFIYDESIEYGQRLSRLI 109


>gi|294101961|ref|YP_003553819.1| ribosome-binding factor A [Aminobacterium colombiense DSM 12261]
 gi|293616941|gb|ADE57095.1| ribosome-binding factor A [Aminobacterium colombiense DSM 12261]
          Length = 130

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 4/82 (4%)

Query: 37  ISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRY 95
           +++D I I+EV  S DL VATV+  + LD    + V+ AL      IR  +G+ LR LR 
Sbjct: 29  VAKDAI-ITEVSCSKDLEVATVFF-VTLDQKQRKAVLKALESVAGPIRSLLGKRLR-LRQ 85

Query: 96  VPELRFRYDTSLQSYWKLNALM 117
           +PE+RF  D+S+    +++AL+
Sbjct: 86  IPEIRFEIDSSVDYGRRIDALL 107


>gi|253580819|ref|ZP_04858082.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847889|gb|EES75856.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 131

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+  EV+  L   I+ NE +D  I   + S+  V ++ DL+    YIS L   
Sbjct: 3   KNSIKNTRINGEVQKEL-STIIRNEIKDPRI-HPMTSVMAVEVAPDLKTCRAYISVLGEK 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +  I  LN    +IR ++ R+L NLR  PE+RF  D S++    ++ L+
Sbjct: 61  EAKEATIKGLNSAEGYIRRQLARNL-NLRNTPEIRFILDESIEYGVNMSKLI 111


>gi|150003447|ref|YP_001298191.1| ribosome-binding factor A [Bacteroides vulgatus ATCC 8482]
 gi|212695394|ref|ZP_03303522.1| hypothetical protein BACDOR_04943 [Bacteroides dorei DSM 17855]
 gi|237711569|ref|ZP_04542050.1| ribosome-binding factor A [Bacteroides sp. 9_1_42FAA]
 gi|254881255|ref|ZP_05253965.1| ribosome-binding factor A [Bacteroides sp. 4_3_47FAA]
 gi|265752997|ref|ZP_06088566.1| ribosome-binding factor A [Bacteroides sp. 3_1_33FAA]
 gi|294777671|ref|ZP_06743122.1| ribosome-binding factor A [Bacteroides vulgatus PC510]
 gi|319640257|ref|ZP_07994982.1| ribosome-binding factor A [Bacteroides sp. 3_1_40A]
 gi|149931871|gb|ABR38569.1| ribosome-binding factor A [Bacteroides vulgatus ATCC 8482]
 gi|212662029|gb|EEB22603.1| hypothetical protein BACDOR_04943 [Bacteroides dorei DSM 17855]
 gi|229454264|gb|EEO59985.1| ribosome-binding factor A [Bacteroides sp. 9_1_42FAA]
 gi|254834048|gb|EET14357.1| ribosome-binding factor A [Bacteroides sp. 4_3_47FAA]
 gi|263236183|gb|EEZ21678.1| ribosome-binding factor A [Bacteroides sp. 3_1_33FAA]
 gi|294448739|gb|EFG17288.1| ribosome-binding factor A [Bacteroides vulgatus PC510]
 gi|317388032|gb|EFV68886.1| ribosome-binding factor A [Bacteroides sp. 3_1_40A]
          Length = 111

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V +S D+ +A VY+S+        ++  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LVSVSAVRISPDMSIARVYLSVFPSERSQEIVKNINDNMKSIRYELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    +++ L+
Sbjct: 92  KFFVDDSLDYAERIDELL 109


>gi|189424729|ref|YP_001951906.1| ribosome-binding factor A [Geobacter lovleyi SZ]
 gi|259552000|sp|B3EAE8|RBFA_GEOLS RecName: Full=Ribosome-binding factor A
 gi|189420988|gb|ACD95386.1| ribosome-binding factor A [Geobacter lovleyi SZ]
          Length = 123

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 61/109 (55%), Gaps = 5/109 (4%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +R+ +V E + + +   IL+    D  I    ++I+ V ++ DL +A ++ ++  D +  
Sbjct: 4   KRSDKVAETIHTTI-STILSRGLNDPRIG--FVTITGVEVTDDLHLARIFFTVIGDEAAK 60

Query: 70  RVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +   A LN   +FIR  +G+ L+ +RY P++ F+YD S +   +++ L+
Sbjct: 61  KSSEAGLNSAARFIRHELGKVLK-MRYTPDILFKYDHSQEYGQRIDDLL 108


>gi|172045663|sp|A8EYY5|RBFA_RICCK RecName: Full=Ribosome-binding factor A
          Length = 129

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     N+ R  ++   +   L+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 1   MKKLTKTNAHRQQKLASIINEVLIEILRRGKMLDIRLFNCPLAITKVIVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ D ++ ALN +   IR  +   + N+++ PE+RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTIDDIMDALNNSKNAIRNFVTNKI-NMKFSPEIRFHYDHGFDNAIKVEKLL 117


>gi|269797848|ref|YP_003311748.1| ribosome-binding factor A [Veillonella parvula DSM 2008]
 gi|269094477|gb|ACZ24468.1| ribosome-binding factor A [Veillonella parvula DSM 2008]
          Length = 118

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 43  SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +I++V ++ DLR AT+Y+SL   D      + AL      IR  +G+ L+ LR++P + F
Sbjct: 34  TITDVHVTGDLREATIYVSLFGSDKEKQDTLIALKHAAGHIRTELGKVLK-LRHIPSITF 92

Query: 102 RYDTSLQSYWKLNALM 117
             DTSL     + +L+
Sbjct: 93  DKDTSLDYSMHIESLL 108


>gi|291616011|ref|YP_003518753.1| RbfA [Pantoea ananatis LMG 20103]
 gi|291151041|gb|ADD75625.1| RbfA [Pantoea ananatis LMG 20103]
 gi|327396262|dbj|BAK13684.1| ribosome-binding factor A RbfA [Pantoea ananatis AJ13355]
          Length = 140

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           K  K   R  RV +E++  +  +IL  E +D  +   ++++S V +S DL  A V+++  
Sbjct: 5   KMAKEFGRPQRVSQELQKEI-AMILQREIKDPRLGM-MVTVSGVEVSRDLAYAKVFVTFL 62

Query: 64  LDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            D   + V   + AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 63  NDKDEEAVQNGLKALKEASGYIRTLLGKAMR-LRIVPELTFFYDNSLIEGMRMSNLVT 119


>gi|156975662|ref|YP_001446569.1| ribosome-binding factor A [Vibrio harveyi ATCC BAA-1116]
 gi|156527256|gb|ABU72342.1| hypothetical protein VIBHAR_03395 [Vibrio harveyi ATCC BAA-1116]
          Length = 137

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
            K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 4   SKEFSRTQRVSQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 60

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
            + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L
Sbjct: 61  GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNL 112


>gi|154497686|ref|ZP_02036064.1| hypothetical protein BACCAP_01662 [Bacteroides capillosus ATCC
           29799]
 gi|150273184|gb|EDN00329.1| hypothetical protein BACCAP_01662 [Bacteroides capillosus ATCC
           29799]
          Length = 129

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 6/115 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R  R+ EE++  L  +I     +D  +   ++SI+ V  + DLR A +++S+ LD S 
Sbjct: 3   SNRIGRINEEIQRELSGLI--RTVKDPRV-HGLVSITAVDTTTDLRYAKIHVSV-LDKSD 58

Query: 69  -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
            + V+  L     ++R  +G +L +LRY PEL F  D S+     + +++  P++
Sbjct: 59  VNEVVKGLKSAAGYLRRELGAAL-SLRYTPELIFEKDDSMAQGAHILSMLRDPEV 112


>gi|188587938|ref|YP_001920619.1| ribosome-binding factor A [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251781062|ref|ZP_04823982.1| ribosome-binding factor A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|238689677|sp|B2V4H0|RBFA_CLOBA RecName: Full=Ribosome-binding factor A
 gi|188498219|gb|ACD51355.1| ribosome-binding factor A [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243085377|gb|EES51267.1| ribosome-binding factor A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 116

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 7/110 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           R  R+ EE +  +  +I  NE +D RL +  +IS+++V ++ DLR A VY+S+      +
Sbjct: 5   RGGRINEEFKREISNII-QNEIKDPRLTA--MISVTDVKVTKDLRYAKVYVSIFSTKEEE 61

Query: 70  RV--ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +    +AL     FIR  +G+ + N+R+ PE+ F  D S+     ++ L+
Sbjct: 62  KKDNFTALKSASGFIRKILGQRI-NVRHNPEILFELDDSINYAMHIDELI 110


>gi|153835029|ref|ZP_01987696.1| ribosome-binding factor A [Vibrio harveyi HY01]
 gi|269961981|ref|ZP_06176336.1| ribosome-binding factor A [Vibrio harveyi 1DA3]
 gi|172044101|sp|A7MZI4|RBFA_VIBHB RecName: Full=Ribosome-binding factor A
 gi|148868506|gb|EDL67605.1| ribosome-binding factor A [Vibrio harveyi HY01]
 gi|269833304|gb|EEZ87408.1| ribosome-binding factor A [Vibrio harveyi 1DA3]
          Length = 135

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
            K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   SKEFSRTQRVSQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 59  GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111


>gi|303236415|ref|ZP_07323004.1| ribosome-binding factor A [Prevotella disiens FB035-09AN]
 gi|302483387|gb|EFL46393.1| ribosome-binding factor A [Prevotella disiens FB035-09AN]
          Length = 111

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R +   ++S++   +S DL + T Y+S+      + ++  +N N K IR  +G+ + N
Sbjct: 24  QTRAMHGVLVSVTRAKVSPDLGICTAYLSIFPSEKSEELLENINKNEKSIRFELGQRVHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYIERIDELL 109


>gi|291460008|ref|ZP_06599398.1| ribosome-binding factor A [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417349|gb|EFE91068.1| ribosome-binding factor A [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 139

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           K S +  R  E+VR  L  +++ +E +D  +S  + +I+ V ++ DL+   VY+S L  +
Sbjct: 3   KQSFKYQRRNEDVRRQL-SLLVRDELKDARVS-PMTNITGVDLTPDLQYCKVYVSALGGE 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              D+ +  L     F+R  + RSL NLR+ PEL F  D S +   +++AL+
Sbjct: 61  EVLDKTMEGLRAASGFLRRELARSL-NLRHTPELSFVADRSAEYGSRMDALI 111


>gi|42523055|ref|NP_968435.1| hypothetical protein Bd1548 [Bdellovibrio bacteriovorus HD100]
 gi|61215037|sp|Q6MMS5|RBFA_BDEBA RecName: Full=Ribosome-binding factor A
 gi|39575260|emb|CAE79428.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
          Length = 134

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           KN  + RR  RV  E+++ +   ++   F+  L    +++++ V M  DLR A VY+S+ 
Sbjct: 2   KNMGDGRRIARVEREIQATIAQFLIRG-FKTPLPG--LVTVASVKMPADLRAAKVYVSIL 58

Query: 64  LDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            D    D  +  L      I+  IG+ L+ +RY P+L F  D + +   K+  ++
Sbjct: 59  GDEKQQDEALDLLQERAFEIQNYIGKELK-MRYCPKLTFYLDHATEQVLKVEKIL 112


>gi|34580479|ref|ZP_00141959.1| ribosome-binding factor A [Rickettsia sibirica 246]
 gi|28261864|gb|EAA25368.1| ribosome-binding factor A [Rickettsia sibirica 246]
          Length = 120

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK     +S R  ++   +   L+ ++   +  D  +    ++I++V ++ DL++A  Y 
Sbjct: 1   MKKLTKTHSHRQQKLASIINEVLIEILRRGKMLDTRLFDCPLTITKVIVTADLKIANCYF 60

Query: 61  SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            LP +  ++ D ++ ALN +   IR  I   + N+++ P++RF YD    +  K+  L+
Sbjct: 61  -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVAHLL 117


>gi|237798564|ref|ZP_04587025.1| ribosome-binding factor A [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331021417|gb|EGI01474.1| ribosome-binding factor A [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 138

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A ++++ +  D
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 66  VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + D  + I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  NAEDIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|149926270|ref|ZP_01914532.1| ribosome-binding factor A [Limnobacter sp. MED105]
 gi|149825088|gb|EDM84300.1| ribosome-binding factor A [Limnobacter sp. MED105]
          Length = 134

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M++K  K   R +RV E+++  L  +I   E +D  +    ++I++V ++ D   ATVY 
Sbjct: 1   MRHKK-KAPARGIRVAEQIQKDLAELI-PRELRDPRLG--FVTITDVELTPDYAYATVYF 56

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
           S+ L  S +    ALN +  ++R  I + L ++  VP LRF++D S++
Sbjct: 57  SV-LTGSAETTEEALNDSSGYLRNLIFKKL-HIHTVPTLRFKHDQSVE 102


>gi|330981091|gb|EGH79194.1| ribosome-binding factor A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 138

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A +++++    
Sbjct: 3   KKYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S + +   I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  SAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|29840225|ref|NP_829331.1| ribosome-binding factor A [Chlamydophila caviae GPIC]
 gi|33301499|sp|Q823F3|RBFA_CHLCV RecName: Full=Ribosome-binding factor A
 gi|29834573|gb|AAP05209.1| ribosome-binding factor A [Chlamydophila caviae GPIC]
          Length = 120

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           +RR  +V   +R A+  VIL +    + IS   I+++ VC+S DL  A VY+S +P + +
Sbjct: 4   NRRIKKVNSLLREAIANVILKDVKHPK-ISNQWITVTRVCLSKDLHSARVYVSIMPHENT 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
               + AL  +  FI  +  + +  L+Y PE+ F
Sbjct: 63  SAETLDALKASAGFIAYKASKGVV-LKYFPEIHF 95


>gi|308272449|emb|CBX29053.1| Ribosome-binding factor A [uncultured Desulfobacterium sp.]
          Length = 119

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
           RA RVG +++  L   +L      RL   ++ +I+ V MS DL++A +Y +      + D
Sbjct: 6   RAERVGGQIQKVLSGALLKGIKDPRL---EMTTITAVKMSKDLKIARIYFTTTGGKTNAD 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
                      F++  +   L  LRY+PEL F YD S
Sbjct: 63  EAAKGFKSAAGFLKRSLSSEL-TLRYMPELIFFYDES 98


>gi|91774424|ref|YP_544180.1| ribosome-binding factor A [Methylobacillus flagellatus KT]
 gi|122399242|sp|Q1GXD5|RBFA_METFK RecName: Full=Ribosome-binding factor A
 gi|91708411|gb|ABE48339.1| ribosome-binding factor A [Methylobacillus flagellatus KT]
          Length = 125

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R+ RV E+++  L   +L  E +D  +S  +++++EV +S D+  A VY + P   
Sbjct: 3   KEFSRSDRVAEQIQRELAD-LLQFEVKDPRVS-SMVTVTEVEVSGDMSHAKVYYTAPQGT 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
               +   L     F+R ++ R L  LR VP+L F YD S+    ++  L+     PVA
Sbjct: 61  P--ELQKGLEKTAGFLRSQLARRLL-LRTVPQLHFVYDASIDRGMRIAKLIDEALPPVA 116


>gi|297798442|ref|XP_002867105.1| hypothetical protein ARALYDRAFT_353351 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312941|gb|EFH43364.1| hypothetical protein ARALYDRAFT_353351 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 787

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 34  DRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           DR +S  + +IS+V +S DL+V  VY+S    D   D  I+ L    K++R  +G+ ++ 
Sbjct: 601 DRYLSS-LTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMK- 658

Query: 93  LRYVPELRFRYDTSLQSYWKLNALM 117
           LR  PE+RF  D S++   ++ A++
Sbjct: 659 LRLTPEVRFIEDESMERGSRVIAIL 683


>gi|255994866|ref|ZP_05428001.1| MgpA protein [Eubacterium saphenum ATCC 49989]
 gi|255993579|gb|EEU03668.1| MgpA protein [Eubacterium saphenum ATCC 49989]
          Length = 458

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRL---ISRDVISISEVCMSVDLRVATVYISLPLDV 66
           +R  R+ EE++      I++N F  ++   I +  I+I+ V +S D R A VY  +    
Sbjct: 5   KRKDRLAEEIKK-----IVSNAFLLKVRDPILKMAINITAVDVSPDGRNAKVYYVVFSGS 59

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             D V +AL      IR  I  ++R +RYVP + F YDTSL+
Sbjct: 60  DKDEVAAALKKVEPLIRKEIAENMR-VRYVPNICFAYDTSLE 100


>gi|217967597|ref|YP_002353103.1| ribosome-binding factor A [Dictyoglomus turgidum DSM 6724]
 gi|217336696|gb|ACK42489.1| ribosome-binding factor A [Dictyoglomus turgidum DSM 6724]
          Length = 127

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 44  ISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
           I+ V MS DLR A +Y+S+   +    + +  L     FIR  +G+ LR +R+VPE+ F 
Sbjct: 42  ITGVKMSKDLRYAHIYVSVYGSEEEKKQTMKGLESAKGFIRSELGKDLR-IRFVPEIFFE 100

Query: 103 YDTSLQ 108
            D SL+
Sbjct: 101 LDDSLE 106


>gi|330877232|gb|EGH11381.1| ribosome-binding factor A [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 138

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A ++++ +  D
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 66  VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + D  + I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  NAEDIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|292492787|ref|YP_003528226.1| ribosome-binding factor A [Nitrosococcus halophilus Nc4]
 gi|291581382|gb|ADE15839.1| ribosome-binding factor A [Nitrosococcus halophilus Nc4]
          Length = 127

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  R+GE ++  L  +I   E +D  +   ++++S V +S DLR A VY++ L  + +  
Sbjct: 7   RTRRIGELLQRELAQLI-QEELKDPRVK--LVTVSHVGVSPDLRQAKVYVTFLGGEKNIQ 63

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + ++ LN    F++  + + +  LR +P LRF YD S++    L+AL+
Sbjct: 64  QQLAVLNKAAGFLQHGLSQRV-ELRAIPRLRFVYDDSIERGRHLSALI 110


>gi|156741119|ref|YP_001431248.1| ribosome-binding factor A [Roseiflexus castenholzii DSM 13941]
 gi|189039554|sp|A7NID0|RBFA_ROSCS RecName: Full=Ribosome-binding factor A
 gi|156232447|gb|ABU57230.1| ribosome-binding factor A [Roseiflexus castenholzii DSM 13941]
          Length = 130

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R  ++G E++  ++  IL  E +D  +     ++  V ++ DL++A V IS+ +    
Sbjct: 2   SKRTEQLGHEIQR-ILGEILQYELKDPRVG--FATVVGVEVTADLQIARVRISV-MGTPE 57

Query: 69  DR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +R   ++AL     F+R R+   L  LR+VPELR   DTS+     ++ L+
Sbjct: 58  ERKETMAALERAKGFLRRRLAEELNYLRFVPELRLILDTSVDYSLHIDELL 108


>gi|323144577|ref|ZP_08079166.1| ribosome-binding factor A [Succinatimonas hippei YIT 12066]
 gi|322415653|gb|EFY06398.1| ribosome-binding factor A [Succinatimonas hippei YIT 12066]
          Length = 119

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 43  SISEVCMSVDLRVATVYISLPL--DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           +++EV ++ DLR A +++S     + +    +  LN    FIR  +   L+ LRY+PE+ 
Sbjct: 36  TVTEVSVNSDLRDARIFVSFLTNDEQAVKEAMEGLNKAKGFIRSELASRLK-LRYMPEIH 94

Query: 101 FRYDTSLQSYWKLNALMC 118
           F +D+ L    KL+AL+ 
Sbjct: 95  FIFDSLLSESMKLDALIA 112


>gi|88807131|ref|ZP_01122643.1| possible Ribosome-binding factor A [Synechococcus sp. WH 7805]
 gi|88788345|gb|EAR19500.1| possible Ribosome-binding factor A [Synechococcus sp. WH 7805]
          Length = 140

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VS 67
            RR  RV   +R     ++++   +D  + + +ISI+ V +S DL+   +++S+  D   
Sbjct: 4   GRRVERVAALIRKETSELLIHG-IRDERVHQGLISITGVEVSGDLQHCKIFVSVLADPEG 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +V+  L     F+RG +GR L+ +R  PE+ F  D  L+    +  L+
Sbjct: 63  KAQVMDGLQAASSFLRGELGRRLK-MRRAPEVVFHLDRGLEKGASVLGLL 111


>gi|330937948|gb|EGH41735.1| ribosome-binding factor A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 138

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A +++++    
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S + +   I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  SAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|284108778|ref|ZP_06386443.1| Ribosome-binding factor A [Candidatus Poribacteria sp. WGA-A3]
 gi|283829852|gb|EFC34143.1| Ribosome-binding factor A [Candidatus Poribacteria sp. WGA-A3]
          Length = 117

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 42  ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           +++++V M+ DLR A VY+S L   V  + V   L+    F+R  +GR L  LRY PE+ 
Sbjct: 19  VTVTDVEMNNDLRKAYVYVSLLGNQVETETVGKILDNASGFVRLELGRRLE-LRYTPEVS 77

Query: 101 FRYDTSLQSYWKLNALM 117
           FR+D+      K+  ++
Sbjct: 78  FRFDSGGSRAEKIGLIL 94


>gi|330950304|gb|EGH50564.1| ribosome-binding factor A [Pseudomonas syringae Cit 7]
          Length = 138

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A +++++    
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S + +   I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  SAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|90961549|ref|YP_535465.1| ribosome-binding factor A [Lactobacillus salivarius UCC118]
 gi|122449169|sp|Q1WUF3|RBFA_LACS1 RecName: Full=Ribosome-binding factor A
 gi|90820743|gb|ABD99382.1| Ribosome-binding factor A [Lactobacillus salivarius UCC118]
          Length = 119

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++I+ V +S DL+ AT+Y S+  D + D  +V + L+     IRG +G  L ++   PE+
Sbjct: 34  VTITGVEVSGDLQHATIYYSILSDKASDEKKVQTGLDKATSLIRGELGHRL-SIYVTPEI 92

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D S+Q    +N L+
Sbjct: 93  KFERDKSVQYGDHINELL 110


>gi|288800321|ref|ZP_06405779.1| ribosome-binding factor A [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332534|gb|EFC71014.1| ribosome-binding factor A [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 111

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-R 91
           Q R +   ++S++   +S DL V T Y+S+      D ++  +  N K IR  +G+ + +
Sbjct: 24  QTRAMMGMMVSVTRCKVSPDLGVCTAYLSVFPSEKGDEILENIRANYKSIRFELGKKIGK 83

Query: 92  NLRYVPELRFRYDTSLQSYWKLNALMC 118
            +R VPELRF  D SL    +++ L+ 
Sbjct: 84  QVRIVPELRFFIDDSLDYLERIDELLA 110


>gi|254490537|ref|ZP_05103723.1| ribosome-binding factor A [Methylophaga thiooxidans DMS010]
 gi|224464281|gb|EEF80544.1| ribosome-binding factor A [Methylophaga thiooxydans DMS010]
          Length = 124

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----LPLDV 66
           R  R GE V   L  ++L  E  D  I   ++++S V ++ DL+ A VY++       + 
Sbjct: 7   RTNRFGEVVMREL-ALMLQREISDPRIG--MVTVSHVDVTADLKYAKVYVTRFNGFESEQ 63

Query: 67  SPDRVISALNCNIKFIR-GRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
                +  LN    ++R G  GR    LR +PEL+F YD SL++ ++++ L+     P
Sbjct: 64  DVQECLQGLNSASGYLRRGLAGRV--KLRSIPELQFVYDKSLENGFRMDELIAKANKP 119


>gi|330969653|gb|EGH69719.1| ribosome-binding factor A [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 138

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A ++++ +  D
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 66  VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            S +  + I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  SSEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|158523043|ref|YP_001530913.1| ribosome-binding factor A [Desulfococcus oleovorans Hxd3]
 gi|238686917|sp|A8ZZ63|RBFA_DESOH RecName: Full=Ribosome-binding factor A
 gi|158511869|gb|ABW68836.1| ribosome-binding factor A [Desulfococcus oleovorans Hxd3]
          Length = 129

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  RA R+G  ++  +  ++       RL   D+ +I+ V +S DL VA VY  +P D 
Sbjct: 2   KSFPRADRIGSSIQRGVSEILRKGLGDPRL---DMATITGVKVSRDLGVAYVYYVIPGDT 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNL---RYVPELRFRYDTSLQSYWKLNALM 117
           +     +A     K   G I RSL  +   +Y+P++RFRYD S      ++ ++
Sbjct: 59  A---GRAAAAAGFKSAEGFIKRSLAGMLKMKYMPDIRFRYDESFAYGQSIDTVL 109


>gi|313894756|ref|ZP_07828316.1| ribosome-binding factor A [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976437|gb|EFR41892.1| ribosome-binding factor A [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 124

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 5/98 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
           R  +V E ++  +  +IL++  +D  I    ++++ V  + DLR A +Y+S+  D     
Sbjct: 5   RVEKVQELMKQEISDIILHD-LKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKGVQ 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
             ++ LN  + ++R  IGR +R LR+ PE+ F  DTSL
Sbjct: 62  ESLAGLNRALGYVRREIGRRIR-LRFTPEISFALDTSL 98


>gi|304396349|ref|ZP_07378230.1| ribosome-binding factor A [Pantoea sp. aB]
 gi|308189114|ref|YP_003933245.1| Ribosome-binding factor A [Pantoea vagans C9-1]
 gi|304355858|gb|EFM20224.1| ribosome-binding factor A [Pantoea sp. aB]
 gi|308059624|gb|ADO11796.1| Ribosome-binding factor A [Pantoea vagans C9-1]
          Length = 136

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   ++++S V +S DL  A V+++   D 
Sbjct: 4   KEFGRPQRVSQELQKEI-AMILQREIKDPRLGM-MVTVSGVEVSRDLAYAKVFVTFLNDK 61

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             D +   + AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 62  DEDAIKHGLKALKEASGYIRILLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 115


>gi|303248246|ref|ZP_07334509.1| ribosome-binding factor A [Desulfovibrio fructosovorans JJ]
 gi|302490384|gb|EFL50295.1| ribosome-binding factor A [Desulfovibrio fructosovorans JJ]
          Length = 111

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLD 65
           K SRR+ R+ +++ +  M + L  + QD RL   ++++IS   ++ DL +A VY +L  D
Sbjct: 4   KPSRRSSRLADQI-AREMALALAEDVQDPRL---ELVTISGAALNADLSIARVYYTLSGD 59

Query: 66  VSPDRVISALNCNIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            +     +      K F+R  +G+ LR LR VP+LRF  DT L+
Sbjct: 60  EARLAEAAEALEQAKGFLRTLLGKRLR-LRAVPQLRFARDTFLE 102


>gi|87125212|ref|ZP_01081058.1| Ribosome-binding factor A [Synechococcus sp. RS9917]
 gi|86166981|gb|EAQ68242.1| Ribosome-binding factor A [Synechococcus sp. RS9917]
          Length = 136

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
            RR  RV   +R     ++++   +D  + + ++SI+EV +S DL+   +++S+   D  
Sbjct: 4   GRRVERVAALIRRETSELLIHG-IRDERVHQGMVSITEVEVSGDLQHCKIFVSIYGEDAD 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              V+  L     ++RG +GR L  +R  PE+ F+ D  ++
Sbjct: 63  KQNVLEGLKAASGYLRGELGRRL-QMRRAPEVVFQLDRGIE 102


>gi|261253849|ref|ZP_05946422.1| ribosome-binding factor A [Vibrio orientalis CIP 102891]
 gi|260937240|gb|EEX93229.1| ribosome-binding factor A [Vibrio orientalis CIP 102891]
          Length = 135

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCIG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +P+  + AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 60  EQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLV 111


>gi|224025278|ref|ZP_03643644.1| hypothetical protein BACCOPRO_02017 [Bacteroides coprophilus DSM
           18228]
 gi|224018514|gb|EEF76512.1| hypothetical protein BACCOPRO_02017 [Bacteroides coprophilus DSM
           18228]
          Length = 111

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V +S D+  A VY+S+      + ++  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LVSVSIVRISPDMSYARVYLSVFPSERSEEIVKNINANMKAIRFELGNRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL     ++ L+
Sbjct: 92  KFFVDDSLDYAAHIDELL 109


>gi|70734338|ref|YP_257978.1| ribosome-binding factor A [Pseudomonas fluorescens Pf-5]
 gi|123658131|sp|Q4KIF5|RBFA_PSEF5 RecName: Full=Ribosome-binding factor A
 gi|68348637|gb|AAY96243.1| ribosome-binding factor A [Pseudomonas fluorescens Pf-5]
          Length = 133

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A ++I++    
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQE 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +++   I  LN    F+R ++ + ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  NAEQIAQSIKVLNSAAGFLRMQLAKEMK-LRSVPQLHFHYDESVARGAHLSALI 112


>gi|30690114|ref|NP_195199.2| ribosome-binding factor A family protein [Arabidopsis thaliana]
 gi|78099793|sp|O65693|RBFA_ARATH RecName: Full=Probable ribosome-binding factor A, chloroplastic;
           Flags: Precursor
 gi|25082957|gb|AAN72022.1| putative protein [Arabidopsis thaliana]
 gi|30023650|gb|AAP13358.1| At4g34730 [Arabidopsis thaliana]
 gi|332661016|gb|AEE86416.1| ribosome-binding factor A [Arabidopsis thaliana]
          Length = 215

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 34  DRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           DR +S  + +IS+V +S DL+V  VY+S    D   D  I+ L    K++R  +G+ ++ 
Sbjct: 94  DRYLSS-LTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMK- 151

Query: 93  LRYVPELRFRYDTSLQSYWKLNALM 117
           LR  PE+RF  D +++   ++ A++
Sbjct: 152 LRLTPEVRFIEDEAMERGSRVIAIL 176


>gi|52842970|ref|YP_096769.1| ribosome-binding factor A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54298755|ref|YP_125124.1| ribosome-binding factor A [Legionella pneumophila str. Paris]
 gi|148361085|ref|YP_001252292.1| ribosome binding factor A [Legionella pneumophila str. Corby]
 gi|61214776|sp|Q5X1C4|RBFA_LEGPA RecName: Full=Ribosome-binding factor A
 gi|61214803|sp|Q5ZRV5|RBFA_LEGPH RecName: Full=Ribosome-binding factor A
 gi|166218446|sp|A5IHU6|RBFA_LEGPC RecName: Full=Ribosome-binding factor A
 gi|52630081|gb|AAU28822.1| ribosome binding factor A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53752540|emb|CAH13972.1| Ribosome-binding factor A [Legionella pneumophila str. Paris]
 gi|148282858|gb|ABQ56946.1| ribosome binding factor A [Legionella pneumophila str. Corby]
 gi|307611643|emb|CBX01329.1| ribosome-binding factor A [Legionella pneumophila 130b]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           N +R  R+ E ++  L  +I       RL  +  ++IS V ++ DL  A +Y ++ L+  
Sbjct: 4   NFKRTDRIAEMIQRKLALIIPQEIKDPRL--KGFVTISAVKVAADLGHAKIYFTV-LNED 60

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              V + LN    ++R  + RS+  LR VP+L F YD S++   +L+ L+
Sbjct: 61  KSVVTNILNGAASYLRSALARSI-TLRTVPQLHFIYDESIEYGQRLSRLI 109


>gi|302185433|ref|ZP_07262106.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae 642]
          Length = 138

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A +++++    
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S + +   I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  SAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|218438840|ref|YP_002377169.1| ribosome-binding factor A [Cyanothece sp. PCC 7424]
 gi|226736641|sp|B7KDJ9|RBFA_CYAP7 RecName: Full=Ribosome-binding factor A
 gi|218171568|gb|ACK70301.1| ribosome-binding factor A [Cyanothece sp. PCC 7424]
          Length = 131

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
             RR  RV   ++  +  ++L+    DR +   ++SI++V +S DL+ A +++S+   + 
Sbjct: 3   TDRRVSRVSSLIKREVSQMLLHGIKDDR-VGAGMVSITDVDVSGDLQHAKIFVSIYGTEQ 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
           +    +  L  ++ F+R  +G+ +R LR  PE+ F  DTSL+
Sbjct: 62  AKAETMEGLKSSVGFVRRELGQRIR-LRRTPEVVFLEDTSLE 102


>gi|54295601|ref|YP_128016.1| ribosome-binding factor A [Legionella pneumophila str. Lens]
 gi|296108415|ref|YP_003620116.1| ribosome-binding factor A [Legionella pneumophila 2300/99 Alcoy]
 gi|61214769|sp|Q5WT37|RBFA_LEGPL RecName: Full=Ribosome-binding factor A
 gi|53755433|emb|CAH16929.1| Ribosome-binding factor A [Legionella pneumophila str. Lens]
 gi|295650317|gb|ADG26164.1| ribosome-binding factor A [Legionella pneumophila 2300/99 Alcoy]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           N +R  R+ E ++  L  +I       RL  +  ++IS V ++ DL  A +Y ++ L+  
Sbjct: 4   NFKRTDRIAEMIQRKLALIIPQEIKDPRL--KGFVTISAVKVAADLGHAKIYFTV-LNED 60

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              V + LN    ++R  + RS+  LR VP+L F YD S++   +L+ L+
Sbjct: 61  KSVVTNILNGAASYLRSALARSI-TLRTVPQLHFIYDESIEYGQRLSRLI 109


>gi|312885212|ref|ZP_07744891.1| ribosome-binding factor A [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367152|gb|EFP94725.1| ribosome-binding factor A [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 136

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
            K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   SKEFSRTQRVAQQLQKEL-ALILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +P+  + AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 59  GEQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLV 111


>gi|163802305|ref|ZP_02196199.1| ribosome-binding factor A [Vibrio sp. AND4]
 gi|159173834|gb|EDP58648.1| ribosome-binding factor A [Vibrio sp. AND4]
          Length = 135

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
            K   R  RV ++++  L  +IL  E +D  +   +++IS+V  S DL  A V+++    
Sbjct: 2   SKEFSRTQRVSQQLQKEL-AMILQREVRDSRLG--MVTISDVEASRDLAYAKVFVTFLCV 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +P+  ++AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 59  GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111


>gi|107103842|ref|ZP_01367760.1| hypothetical protein PaerPA_01004913 [Pseudomonas aeruginosa PACS2]
 gi|218893838|ref|YP_002442707.1| ribosome-binding factor A [Pseudomonas aeruginosa LESB58]
 gi|254244355|ref|ZP_04937677.1| ribosome-binding factor A [Pseudomonas aeruginosa 2192]
 gi|226736650|sp|B7V1F5|RBFA_PSEA8 RecName: Full=Ribosome-binding factor A
 gi|126197733|gb|EAZ61796.1| ribosome-binding factor A [Pseudomonas aeruginosa 2192]
 gi|218774066|emb|CAW29882.1| ribosome-binding factor A [Pseudomonas aeruginosa LESB58]
          Length = 130

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 7/115 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K+  R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A V+I++   
Sbjct: 2   AKDYSRTQRIGDQMQRELAQLI-QREIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58

Query: 66  VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               ++   +  LN    ++R  +G+S++ LR VP+L F YD S++   +L+AL+
Sbjct: 59  DDAGKIALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALI 112


>gi|148976706|ref|ZP_01813393.1| ribosome-binding factor A [Vibrionales bacterium SWAT-3]
 gi|145964057|gb|EDK29315.1| ribosome-binding factor A [Vibrionales bacterium SWAT-3]
          Length = 137

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K   R  RV ++++  L  +IL  E +D  I   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVSQQLQKEL-ALILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFLCIG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +P+  ++AL  +   IR  +G+ +R+ R  PE+RF YD +L    +++ L+
Sbjct: 60  EQTPESCLAALKEHEVPIRMALGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLV 111


>gi|289676026|ref|ZP_06496916.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae FF5]
          Length = 117

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 7/115 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A +++++   
Sbjct: 2   AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58

Query: 66  VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            S + +   I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 59  DSAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|66047406|ref|YP_237247.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae B728a]
 gi|75500704|sp|Q4ZNR3|RBFA_PSEU2 RecName: Full=Ribosome-binding factor A
 gi|63258113|gb|AAY39209.1| Ribosome-binding factor A [Pseudomonas syringae pv. syringae B728a]
          Length = 138

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A +++++    
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S + +   I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  SAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|49077912|gb|AAT49730.1| PA4743 [synthetic construct]
          Length = 130

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 7/115 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K+  R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A V+I++   
Sbjct: 2   AKDYSRTQRIGDQMQRELAQLI-QREIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58

Query: 66  VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               ++   +  LN    ++R  +G+S++ LR VP+L F YD S++   +L+AL+
Sbjct: 59  DDAGKIALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALI 112


>gi|119774099|ref|YP_926839.1| ribosome-binding factor A [Shewanella amazonensis SB2B]
 gi|166219403|sp|A1S463|RBFA_SHEAM RecName: Full=Ribosome-binding factor A
 gi|119766599|gb|ABL99169.1| ribosome-binding factor A [Shewanella amazonensis SB2B]
          Length = 137

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 8/111 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  R+G++++  L +V L  + +D  I   ++++++V +S DL  A VY++   +  P  
Sbjct: 7   RTRRIGQQLQQELAFV-LQRDMKDPRIG--MVTVNDVDVSRDLSHAKVYVTF-FEEDPQV 62

Query: 71  V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +   ++ALN    + R  +   ++ LR +PELRF YD SL    +++ L+ 
Sbjct: 63  IEAKLAALNTAAPYARTLVAGRMK-LRVMPELRFIYDASLVEGMRMSNLVS 112


>gi|71736021|ref|YP_276310.1| ribosome-binding factor A [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257482260|ref|ZP_05636301.1| ribosome-binding factor A [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289627534|ref|ZP_06460488.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646962|ref|ZP_06478305.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298488457|ref|ZP_07006488.1| Ribosome-binding factor A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|123635189|sp|Q48E78|RBFA_PSE14 RecName: Full=Ribosome-binding factor A
 gi|71556574|gb|AAZ35785.1| ribosome-binding factor A [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298157082|gb|EFH98171.1| Ribosome-binding factor A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320322527|gb|EFW78620.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320330004|gb|EFW85991.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330868247|gb|EGH02956.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330987056|gb|EGH85159.1| ribosome-binding factor A [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 138

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A +++++    
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S + +   I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  SAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|15599937|ref|NP_253431.1| ribosome-binding factor A [Pseudomonas aeruginosa PAO1]
 gi|116052890|ref|YP_793207.1| ribosome-binding factor A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296391570|ref|ZP_06881045.1| ribosome-binding factor A [Pseudomonas aeruginosa PAb1]
 gi|313109724|ref|ZP_07795664.1| ribosome-binding factor A [Pseudomonas aeruginosa 39016]
 gi|20978658|sp|Q9HV56|RBFA_PSEAE RecName: Full=Ribosome-binding factor A
 gi|122257099|sp|Q02FS9|RBFA_PSEAB RecName: Full=Ribosome-binding factor A
 gi|9951005|gb|AAG08129.1|AE004888_4 ribosome-binding factor A [Pseudomonas aeruginosa PAO1]
 gi|115588111|gb|ABJ14126.1| ribosome-binding factor A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310882166|gb|EFQ40760.1| ribosome-binding factor A [Pseudomonas aeruginosa 39016]
          Length = 129

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 7/115 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K+  R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A V+I++   
Sbjct: 2   AKDYSRTQRIGDQMQRELAQLI-QREIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58

Query: 66  VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               ++   +  LN    ++R  +G+S++ LR VP+L F YD S++   +L+AL+
Sbjct: 59  DDAGKIALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALI 112


>gi|262197034|ref|YP_003268243.1| ribosome-binding factor A [Haliangium ochraceum DSM 14365]
 gi|262080381|gb|ACY16350.1| ribosome-binding factor A [Haliangium ochraceum DSM 14365]
          Length = 150

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
           R  RVG  +R  L  ++       R+ +  ++SI++V ++ DL VA +Y+S    P   +
Sbjct: 6   RRQRVGNALREVLTELVARELKDPRVHAAGLVSINQVELNRDLSVAFIYVSFVGAPDARA 65

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
             R +  L     F+RG   R L+ L+  PELRF  D
Sbjct: 66  EKRALDGLQAAAGFLRGPAARRLK-LQRAPELRFMDD 101


>gi|76788809|ref|YP_327895.1| ribosome-binding factor A [Chlamydia trachomatis A/HAR-13]
 gi|237802527|ref|YP_002887721.1| ribosome-binding factor A [Chlamydia trachomatis B/Jali20/OT]
 gi|237804444|ref|YP_002888598.1| ribosome-binding factor A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|123607168|sp|Q3KMS5|RBFA_CHLTA RecName: Full=Ribosome-binding factor A
 gi|76167339|gb|AAX50347.1| ribosome-binding factor A [Chlamydia trachomatis A/HAR-13]
 gi|231272744|emb|CAX09648.1| ribosome-binding factor A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273761|emb|CAX10542.1| ribosome-binding factor A [Chlamydia trachomatis B/Jali20/OT]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           +RR  +V   +R A+  VIL +    + IS   I+I+ V +S DL+ A VY+S +P + S
Sbjct: 4   NRRMKKVNAMLREAIAKVILKDVKHPK-ISNRWITITRVSLSRDLQSACVYVSIMPHENS 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
            +  ++AL  +  FI  +  + L  L+Y P+L F
Sbjct: 63  QEETLAALKASAGFIAFQASKDLV-LKYFPDLNF 95


>gi|237725978|ref|ZP_04556459.1| ribosome-binding factor A [Bacteroides sp. D4]
 gi|229435786|gb|EEO45863.1| ribosome-binding factor A [Bacteroides dorei 5_1_36/D4]
          Length = 111

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V ++ D+ +A VY+S+        ++  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LVSVSAVRITPDMSIARVYLSVFPSERSQEIVKNINDNMKSIRYELGTRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL    +++ L+
Sbjct: 92  KFFVDDSLDYAERIDELL 109


>gi|323491072|ref|ZP_08096264.1| ribosome-binding factor A [Vibrio brasiliensis LMG 20546]
 gi|323314736|gb|EGA67808.1| ribosome-binding factor A [Vibrio brasiliensis LMG 20546]
          Length = 136

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
            K   R  RV ++++  L  +IL  E +D  +   +++IS+V +S DL  A V+++    
Sbjct: 2   SKEFSRTQRVSQQLQKEL-ALILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58

Query: 65  -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +P+  + AL  +   IR  +G+ +R LR  PE+RF YD +L    +++ L+
Sbjct: 59  GEQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLV 111


>gi|15604814|ref|NP_219598.1| ribosome-binding factor A [Chlamydia trachomatis D/UW-3/CX]
 gi|166154316|ref|YP_001654434.1| ribosome-binding factor A [Chlamydia trachomatis 434/Bu]
 gi|166155191|ref|YP_001653446.1| ribosome-binding factor A [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|255310897|ref|ZP_05353467.1| ribosome-binding factor A [Chlamydia trachomatis 6276]
 gi|255317197|ref|ZP_05358443.1| ribosome-binding factor A [Chlamydia trachomatis 6276s]
 gi|255348457|ref|ZP_05380464.1| ribosome-binding factor A [Chlamydia trachomatis 70]
 gi|255502999|ref|ZP_05381389.1| ribosome-binding factor A [Chlamydia trachomatis 70s]
 gi|255506670|ref|ZP_05382309.1| ribosome-binding factor A [Chlamydia trachomatis D(s)2923]
 gi|301335567|ref|ZP_07223811.1| ribosome-binding factor A [Chlamydia trachomatis L2tet1]
 gi|6685836|sp|O84097|RBFA_CHLTR RecName: Full=Ribosome-binding factor A
 gi|226723593|sp|B0B9K3|RBFA_CHLT2 RecName: Full=Ribosome-binding factor A
 gi|226723594|sp|B0BB82|RBFA_CHLTB RecName: Full=Ribosome-binding factor A
 gi|3328491|gb|AAC67686.1| Ribosome Binding Factor A [Chlamydia trachomatis D/UW-3/CX]
 gi|165930304|emb|CAP03790.1| ribosome-binding factor A [Chlamydia trachomatis 434/Bu]
 gi|165931179|emb|CAP06744.1| ribosome-binding factor A [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|289525139|emb|CBJ14611.1| ribosome-binding factor A [Chlamydia trachomatis Sweden2]
 gi|296434683|gb|ADH16861.1| ribosome-binding factor A [Chlamydia trachomatis E/150]
 gi|296435612|gb|ADH17786.1| ribosome-binding factor A [Chlamydia trachomatis G/9768]
 gi|296436535|gb|ADH18705.1| ribosome-binding factor A [Chlamydia trachomatis G/11222]
 gi|296437472|gb|ADH19633.1| ribosome-binding factor A [Chlamydia trachomatis G/11074]
 gi|296438400|gb|ADH20553.1| ribosome-binding factor A [Chlamydia trachomatis E/11023]
 gi|297139971|gb|ADH96729.1| ribosome-binding factor A [Chlamydia trachomatis G/9301]
 gi|297748224|gb|ADI50770.1| Ribosome-binding factor A [Chlamydia trachomatis D-EC]
 gi|297749104|gb|ADI51782.1| Ribosome-binding factor A [Chlamydia trachomatis D-LC]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           +RR  +V   +R A+  VIL +    + IS   I+I+ V +S DL+ A VY+S +P + S
Sbjct: 4   NRRMKKVNAMLREAIAKVILKDVKHPK-ISNRWITITRVSLSRDLQSACVYVSIMPHENS 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
            +  ++AL  +  FI  +  + L  L+Y P+L F
Sbjct: 63  QEETLAALKASAGFIAFQASKDLV-LKYFPDLNF 95


>gi|320530112|ref|ZP_08031182.1| ribosome-binding factor A [Selenomonas artemidis F0399]
 gi|320137545|gb|EFW29457.1| ribosome-binding factor A [Selenomonas artemidis F0399]
          Length = 112

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           ++++ V  + DLR A +Y+S+  D       ++ LN  + ++R  IGR +R LR+ PE+ 
Sbjct: 21  VTVTSVACTEDLREAKIYVSVMGDEKGVQESLAGLNRALGYVRREIGRRIR-LRFTPEIS 79

Query: 101 FRYDTSL 107
           F  DTSL
Sbjct: 80  FALDTSL 86


>gi|117926999|ref|YP_867616.1| ribosome-binding factor A [Magnetococcus sp. MC-1]
 gi|171460788|sp|A0LE17|RBFA_MAGSM RecName: Full=Ribosome-binding factor A
 gi|117610755|gb|ABK46210.1| ribosome-binding factor A [Magnetococcus sp. MC-1]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RVG  +R  +  ++   E +D  +    ++I EV +S DL  A VY ++  +     
Sbjct: 4   RTERVGNAIRKEVASMLTRGEIKDPRLG-GFVNIQEVRVSPDLSYAKVYYTVFGESDQAG 62

Query: 71  VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
           V  A      F+R  I + L+ LR+ PELRF  D       +++ L+   +IP A
Sbjct: 63  VADAWQRASGFLRNVIAKRLK-LRHAPELRFELDHVADYSKRIDELLNGLEIPPA 116


>gi|289549104|ref|YP_003474092.1| ribosome-binding factor A [Thermocrinis albus DSM 14484]
 gi|289182721|gb|ADC89965.1| ribosome-binding factor A [Thermocrinis albus DSM 14484]
          Length = 107

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
            RR  R+ E ++  +  +IL +    RL  ++V+ ++ + +S D++  TVY +   +   
Sbjct: 2   ERRKERLRELLKQEIANLILYHLKDPRL--KEVV-VTRIELSPDMKDMTVYYTTLTEGEE 58

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
           +++  AL     FIR ++ +SL +++YVP +RF++D  L+   +L
Sbjct: 59  EKIQKALEQAKGFIRHQLMKSL-DIKYVPNMRFKFDKELKQMERL 102


>gi|238897561|ref|YP_002923240.1| 30S ribosome-binding factor [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465318|gb|ACQ67092.1| 30S ribosome-binding factor [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 137

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 12/109 (11%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
           K   RA RV  E++  +  +IL  E +D  +   ++++S V MS DL  A ++++    L
Sbjct: 2   KEFSRAQRVSHEIQKEI-ALILQREIKDPRVG--MVTVSSVKMSRDLAYAKIFVTFLNDL 58

Query: 63  PLDVSPDRV----ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
             +++PD      I AL     +IR  +G+++  LR VP L F YD SL
Sbjct: 59  TENMAPDHHHADGIKALQEASGYIRVLLGKAM-CLRIVPHLTFIYDDSL 106


>gi|331011500|gb|EGH91556.1| ribosome-binding factor A [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 138

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A +++++    
Sbjct: 3   KKYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITPVDVSRDVGHAKIFMTVMGQD 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S + +   I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  SAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|77919157|ref|YP_356972.1| ribosome-binding factor A [Pelobacter carbinolicus DSM 2380]
 gi|123574181|sp|Q3A4A5|RBFA_PELCD RecName: Full=Ribosome-binding factor A
 gi|77545240|gb|ABA88802.1| ribosome-binding factor A [Pelobacter carbinolicus DSM 2380]
          Length = 119

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RVGE+++  +  ++L    +D  +    ++I+ V ++ D+ +A VY ++  +    +
Sbjct: 5   RPHRVGEQLQKEISALLLKG-LKDPRVG--FVTITAVSVTPDMHLARVYYTVYGEEEQRK 61

Query: 71  VIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                L     F R  +GR LR +RYVP+L F +D +L+   ++ +L+
Sbjct: 62  ETQKGLESATPFFRRELGRRLR-MRYVPDLVFEFDKALEYGNRIESLL 108


>gi|187933507|ref|YP_001885472.1| ribosome-binding factor A [Clostridium botulinum B str. Eklund 17B]
 gi|238691621|sp|B2TJ56|RBFA_CLOBB RecName: Full=Ribosome-binding factor A
 gi|187721660|gb|ACD22881.1| ribosome-binding factor A [Clostridium botulinum B str. Eklund 17B]
          Length = 116

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 7/110 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           R  R+ EE +  +  +I  NE +D RL +  +IS+++V ++ DL+ A VY+S+      +
Sbjct: 5   RGGRINEEFKREISNII-QNEIKDPRLTA--MISVTDVKVTKDLKYAKVYVSIFSTKEEE 61

Query: 70  RV--ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +    +AL     FIR  +G+ + N+R+ PE+ F  D S+     ++ L+
Sbjct: 62  KKDNFTALKSASGFIRKILGQRI-NVRHNPEILFELDDSINYAMHIDELI 110


>gi|291523278|emb|CBK81571.1| ribosome-binding factor A [Coprococcus catus GD/7]
          Length = 130

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  R+  EV+  L  +I + E +D  IS  + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRINGEVQKELSRII-SREIKDPRIS-PMTSVVAVEVAPDLKQCKAYISVLGDK 60

Query: 67  -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + D  ++ L   I FIR  + R++ NLR  PE+ F  D S++    ++ L+
Sbjct: 61  DAQDATLAGLKSAIGFIRRELARTV-NLRNTPEIHFVLDQSIEYGVNMSKLI 111


>gi|288928933|ref|ZP_06422779.1| ribosome-binding factor A [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329917|gb|EFC68502.1| ribosome-binding factor A [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 111

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R++   ++S++   +S DL + T Y+S+      + ++  +  N K IR  +G  + N
Sbjct: 24  QTRMMHGVMVSVTRTRVSPDLSICTAYLSVFPSEKGEELLKNIESNTKTIRYELGTRVHN 83

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL    +++ L+
Sbjct: 84  QLRIIPELRFFIDDSLDYIERIDELL 109


>gi|285017809|ref|YP_003375520.1| ribosome-binding factor a protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473027|emb|CBA15532.1| probable ribosome-binding factor a protein [Xanthomonas
           albilineans]
          Length = 136

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 5/122 (4%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+ RR  RV  ++R  L   I++   +D  +    +S+S+V ++ D+  A V+++  +  
Sbjct: 4   KSFRRTDRVAAQIRRDL-GTIVHAAVRDHGLPS--VSVSDVEVTRDMAHAKVFVTALMPE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-CLPKIPVA 125
                +  L      +R  + R+++ LR+VPEL F YD S+    +++ L+  +P++   
Sbjct: 61  RSSEAVKGLKELAPQLRTELARAMK-LRHVPELHFHYDDSVDRGERIDTLLRDMPELQSG 119

Query: 126 LE 127
           +E
Sbjct: 120 VE 121


>gi|229918670|ref|YP_002887316.1| ribosome-binding factor A [Exiguobacterium sp. AT1b]
 gi|229470099|gb|ACQ71871.1| ribosome-binding factor A [Exiguobacterium sp. AT1b]
          Length = 115

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 8/110 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
           RA RV E++R  +  V+L      R  +    +I+ V ++ DL+ ATVY ++     DV 
Sbjct: 4   RAQRVAEQMRKEITDVLLREVSDPRTKN---ATITSVDVTGDLQQATVYYTVLGDEEDVK 60

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +   + L+    FIR  IG  +R LR  PE+ F YD+S+     +++L+
Sbjct: 61  AE-TQAGLDKAKGFIRREIGNRIR-LRKTPEISFEYDSSVAYGSHIDSLI 108


>gi|303229587|ref|ZP_07316375.1| ribosome-binding factor A [Veillonella atypica ACS-134-V-Col7a]
 gi|302515712|gb|EFL57666.1| ribosome-binding factor A [Veillonella atypica ACS-134-V-Col7a]
          Length = 118

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 43  SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           ++++V ++ DLR AT+Y+SL   D   +  + AL      +R  +G+ L+ LR++P + F
Sbjct: 34  TVTDVHVTGDLREATIYVSLFGSDKEKEDTLIALKHASGHVRTELGKVLK-LRHIPTITF 92

Query: 102 RYDTSLQSYWKLNALM 117
             DTSL     + +L+
Sbjct: 93  DKDTSLDYSMHIESLL 108


>gi|87301786|ref|ZP_01084620.1| ribosome-binding factor A [Synechococcus sp. WH 5701]
 gi|87283354|gb|EAQ75309.1| ribosome-binding factor A [Synechococcus sp. WH 5701]
          Length = 128

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR--VISALNCNIKFIRG 84
           +L N  +D  +S  ++S+++V ++ DL+   +++S+      DR   ++ L     F++G
Sbjct: 12  LLVNGIKDERVSLGMVSVTQVEVAGDLQHCKIFVSI-FGTDEDRQTALAGLKSAAPFVKG 70

Query: 85  RIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
            + R L NLR  PE++F  D  LQ    +  L+ 
Sbjct: 71  ELARRL-NLRRTPEVQFLLDRGLQKGSSVLGLLS 103


>gi|329295927|ref|ZP_08253263.1| ribosome-binding factor A [Plautia stali symbiont]
          Length = 135

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   ++++S V +S DL  A V+++   D 
Sbjct: 3   KEFGRPQRVAQELQKEI-AIILQREIKDPRLGM-MVTVSGVEVSRDLAYAKVFVTFLNDQ 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             + V   + AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEEAVKNGLKALKEASGYIRILLGKAMR-LRIVPELTFFYDNSLIEGMRMSNLVS 114


>gi|312963082|ref|ZP_07777567.1| Ribosome-binding factor A [Pseudomonas fluorescens WH6]
 gi|311282593|gb|EFQ61189.1| Ribosome-binding factor A [Pseudomonas fluorescens WH6]
          Length = 131

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           K   R  R+G++++  L  +I   E +D  +   +++I+ V +S D+  A ++I+ +  D
Sbjct: 3   KEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQD 59

Query: 66  VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            S +  + I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  NSEEIAQSIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112


>gi|220934180|ref|YP_002513079.1| ribosome-binding factor A [Thioalkalivibrio sp. HL-EbGR7]
 gi|254789772|sp|B8GP03|RBFA_THISH RecName: Full=Ribosome-binding factor A
 gi|219995490|gb|ACL72092.1| ribosome-binding factor A [Thioalkalivibrio sp. HL-EbGR7]
          Length = 129

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 5/113 (4%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL 64
           P++  R  RVG++++  L  +I   E +D  +   +++++ V +S DL  A V+ + L  
Sbjct: 2   PRDFSRTERVGDQIQRELAELI-RMELKDPRVG--MVTLAGVEVSRDLAHAKVWFTVLGS 58

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +         L     F+R  +GR +R LR VP L F+YD + +   +L+AL+
Sbjct: 59  EQQIADTTEGLQRAAGFLRRELGRRMR-LRTVPHLHFQYDDTQEKGARLSALI 110


>gi|301300287|ref|ZP_07206496.1| ribosome-binding factor A [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852128|gb|EFK79803.1| ribosome-binding factor A [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 119

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++I+ V +S DL+ AT+Y S+  D + D  +V + L+     IRG++G  L ++   PE+
Sbjct: 34  VTITGVEVSGDLQHATIYYSILSDKASDEKKVQTGLDKATSLIRGKLGHRL-SIYVTPEI 92

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D S+Q    ++ L+
Sbjct: 93  KFERDKSVQYGDHIDELL 110


>gi|206895632|ref|YP_002247273.1| ribosome-binding factor A [Coprothermobacter proteolyticus DSM
           5265]
 gi|226736640|sp|B5Y926|RBFA_COPPD RecName: Full=Ribosome-binding factor A
 gi|206738249|gb|ACI17327.1| ribosome-binding factor A [Coprothermobacter proteolyticus DSM
           5265]
          Length = 137

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 54/98 (55%), Gaps = 4/98 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  R+ + ++  L  ++L +   +RL     ++I++V +S D +   VY S     + ++
Sbjct: 5   RKERLQQAIKQELSKILLEDMNDERL---KFVTITDVELSDDQKYLKVYFSTMPGKNSEQ 61

Query: 71  VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
           ++ +L     ++ G + R+LR LR+ PE++F  D S++
Sbjct: 62  ILQSLERVKGYVSGEVARTLR-LRFAPEIKFELDNSIE 98


>gi|226313018|ref|YP_002772912.1| ribosome binding factor A [Brevibacillus brevis NBRC 100599]
 gi|254789735|sp|C0ZF49|RBFA_BREBN RecName: Full=Ribosome-binding factor A
 gi|226095966|dbj|BAH44408.1| ribosome binding factor A [Brevibacillus brevis NBRC 100599]
          Length = 121

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 62/112 (55%), Gaps = 7/112 (6%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           N  R  RVGEE++  L  V L    +D  +    +++++V +S DL++A V++S+     
Sbjct: 2   NKTRISRVGEEIKKELSLV-LQRGLKDPRVG--FVTVTDVEVSSDLQLAKVFVSI-FGSE 57

Query: 68  PDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +R   ++ L     ++R  IG+ ++ LR++P+  F+ D S+    K+ +++
Sbjct: 58  EERKASLAGLTKAKGYLRTEIGKRVK-LRHIPDFVFKLDESIDYGSKIESIL 108


>gi|330504826|ref|YP_004381695.1| ribosome-binding factor A [Pseudomonas mendocina NK-01]
 gi|328919112|gb|AEB59943.1| ribosome-binding factor A [Pseudomonas mendocina NK-01]
          Length = 129

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 68/116 (58%), Gaps = 8/116 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL 64
            K+  R  R+G++++  L  V++  E +D  +   +++I+ V +S DL  A V+I+ +  
Sbjct: 2   AKDYSRTQRIGDQMQREL-AVLIQREIKDPRLG--LVTITAVDVSRDLSHAKVFITVMGK 58

Query: 65  DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D   +++   +  L     ++R  +G+S++ +R +P+L F+YD S++   +L+AL+
Sbjct: 59  DDDAEQIKLNLEILGEAAGYLRMLLGKSMK-VRTIPQLHFQYDASIRRGAELSALI 113


>gi|86148616|ref|ZP_01066899.1| ribosome-binding factor A [Vibrio sp. MED222]
 gi|218710444|ref|YP_002418065.1| ribosome-binding factor A [Vibrio splendidus LGP32]
 gi|254789773|sp|B7VJH6|RBFA_VIBSL RecName: Full=Ribosome-binding factor A
 gi|85833607|gb|EAQ51782.1| ribosome-binding factor A [Vibrio sp. MED222]
 gi|218323463|emb|CAV19640.1| ribosome-binding factor A [Vibrio splendidus LGP32]
          Length = 137

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K   R  RV ++++  L  +IL  E +D  I   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVSQQLQKEL-ALILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFLCIG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +P+  ++AL  +   +R  +G+ +R+ R  PE+RF YD +L    +++ L+
Sbjct: 60  EQTPESCLAALKEHEVPVRMALGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLV 111


>gi|121535263|ref|ZP_01667077.1| ribosome-binding factor A [Thermosinus carboxydivorans Nor1]
 gi|121306148|gb|EAX47076.1| ribosome-binding factor A [Thermosinus carboxydivorans Nor1]
          Length = 117

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
           R  ++ E ++  +  +IL  E +D  I    ++++ V +S DLR A +++SL   D    
Sbjct: 5   RVEKIQEFIKQEVSKIILT-ELKDPRIG--FVTVTRVEVSGDLRYAKIFLSLMGSDEEKA 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              + L+  + +IR  IG+ L  +R+VPEL    D SLQ   ++  L+
Sbjct: 62  GTWAGLHRALGYIRTEIGKHL-GIRHVPELSLHLDESLQYSARIQELL 108


>gi|84387284|ref|ZP_00990305.1| ribosome-binding factor A [Vibrio splendidus 12B01]
 gi|84377931|gb|EAP94793.1| ribosome-binding factor A [Vibrio splendidus 12B01]
          Length = 137

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
           K   R  RV ++++  L  +IL  E +D  I   +++IS+V +S DL  A V+++     
Sbjct: 3   KEFSRTQRVSQQLQKEL-ALILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFLCIG 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +P+  ++AL  +   +R  +G+ +R+ R  PE+RF YD +L    +++ L+
Sbjct: 60  EQTPESCLAALKEHEVPVRMALGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLV 111


>gi|88797624|ref|ZP_01113213.1| ribosome-binding factor A [Reinekea sp. MED297]
 gi|88779796|gb|EAR10982.1| ribosome-binding factor A [Reinekea sp. MED297]
          Length = 137

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 16/121 (13%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           NS R  ++G++++  L  VI+  E +D  +   +++I++V +S DL  A VY +  +   
Sbjct: 4   NSSRIRKIGDQIQKDL-SVIIQREVKDPRVG--MVTINDVKVSSDLSYADVYFTC-MAFG 59

Query: 68  PDRVISA-----------LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
           P     A           LN    F+R ++ + L+ LR +P+LRF YD  +++  +++ L
Sbjct: 60  PQSEAEAQEQERKEQEKLLNRAAGFMRTQLAQGLK-LRVIPQLRFHYDVVIETGARVSQL 118

Query: 117 M 117
           +
Sbjct: 119 I 119


>gi|148657851|ref|YP_001278056.1| ribosome-binding factor A [Roseiflexus sp. RS-1]
 gi|172048090|sp|A5UZQ3|RBFA_ROSS1 RecName: Full=Ribosome-binding factor A
 gi|148569961|gb|ABQ92106.1| ribosome-binding factor A [Roseiflexus sp. RS-1]
          Length = 130

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 8/112 (7%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R  ++G E++  L  VI   E +D  +     ++  V ++ DL++A V IS+    +P
Sbjct: 2   SKRTEQLGHEIQRILGEVI-QYELKDPRVG--FATVVGVEVTADLQIARVRISVM--GTP 56

Query: 69  DR---VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D     ++AL     F+R R+   L  LR+VPELR   DTS+     ++ L+
Sbjct: 57  DERRETMAALERARGFLRRRLAEELNYLRFVPELRLILDTSVDYSLHIDELL 108


>gi|116073898|ref|ZP_01471160.1| ribosome-binding factor A [Synechococcus sp. RS9916]
 gi|116069203|gb|EAU74955.1| ribosome-binding factor A [Synechococcus sp. RS9916]
          Length = 133

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
            RR  RV   +R     +++N   +D  + + ++SI+EV +S DL+   +++S+   +  
Sbjct: 4   GRRVERVAALIRRETSELLING-IRDERVHQGMVSITEVEVSGDLQHCKIFVSIYSEEEQ 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             +V+  L     ++RG +GR L  +R  PE+ F+ D  ++
Sbjct: 63  RQQVLEGLQAASGYLRGELGRRL-QMRRAPEVVFQLDRGIE 102


>gi|124024303|ref|YP_001018610.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9303]
 gi|166219388|sp|A2CCY5|RBFA_PROM3 RecName: Full=Ribosome-binding factor A
 gi|123964589|gb|ABM79345.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9303]
          Length = 142

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 4/115 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
            RR  RV   +R     ++++   +D  + + ++SI+ V +S DL+   +++S+   ++ 
Sbjct: 4   GRRVERVAALIRRETSELLIHG-IRDERVHQGMVSITNVEVSGDLQHCKIFVSIYGEEIQ 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK-LNALMCLPK 121
              V+  L     F+RG +GR L+ +R  PE+ F  D  ++     LN L  L +
Sbjct: 63  RSEVLEGLEAASGFLRGELGRRLQ-MRRAPEVHFHLDRGIEKGTSVLNLLEQLEQ 116


>gi|302811611|ref|XP_002987494.1| hypothetical protein SELMODRAFT_48536 [Selaginella moellendorffii]
 gi|302822285|ref|XP_002992801.1| hypothetical protein SELMODRAFT_48535 [Selaginella moellendorffii]
 gi|300139349|gb|EFJ06091.1| hypothetical protein SELMODRAFT_48535 [Selaginella moellendorffii]
 gi|300144648|gb|EFJ11330.1| hypothetical protein SELMODRAFT_48536 [Selaginella moellendorffii]
          Length = 162

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           V +IS+V +S DL+VA +YIS+  D     + I  L    K++R ++G+ ++ LR  PE+
Sbjct: 48  VTTISDVEISRDLQVAKIYISVFGDERGKEIAIEGLKSREKYVRMQLGKRMK-LRLTPEV 106

Query: 100 RFRYDTSLQSYWKLNALM 117
           RF  D S +   ++  L+
Sbjct: 107 RFIADDSFERGARVIKLL 124


>gi|146308622|ref|YP_001189087.1| ribosome-binding factor A [Pseudomonas mendocina ymp]
 gi|166219393|sp|A4XYD9|RBFA_PSEMY RecName: Full=Ribosome-binding factor A
 gi|145576823|gb|ABP86355.1| ribosome-binding factor A [Pseudomonas mendocina ymp]
          Length = 129

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 67/116 (57%), Gaps = 8/116 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL 64
            K+  R  R+G++++  L  V++  E +D  +   +++I+ V +S DL  A V+I+ +  
Sbjct: 2   AKDYSRTQRIGDQMQREL-AVLIQREIKDPRLG--LVTITAVDVSRDLSHAKVFITVMGK 58

Query: 65  DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D   +++   +  L     ++R  +G+S++ +R +P+L F YD S++   +L+AL+
Sbjct: 59  DDDAEQIKLNLEILGEAAGYLRMLLGKSMK-VRTIPQLHFHYDASIRRGAELSALI 113


>gi|33864228|ref|NP_895788.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9313]
 gi|39931781|sp|Q7V4I8|RBFA_PROMM RecName: Full=Ribosome-binding factor A
 gi|33635812|emb|CAE22137.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9313]
          Length = 142

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
            RR  RV   +R     ++++   +D  + + ++SI+ V +S DL+   +++S+   ++ 
Sbjct: 4   GRRVERVAALIRRETSELLIHG-IRDERVHQGMVSITNVEVSGDLQHCKIFVSIYGEEIQ 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              V+  L     F+RG +GR L+ +R  PE+ F  D  ++
Sbjct: 63  RSEVLEGLEAASGFLRGELGRRLQ-MRRAPEVHFHLDRGIE 102


>gi|332881242|ref|ZP_08448892.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680618|gb|EGJ53565.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 111

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 32  FQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR 91
            Q + +   ++S+S   +S DL +  VY+S+      + ++  +N N+K IR  +G  +R
Sbjct: 23  LQTKAMKGVLVSVSACRISPDLSICRVYLSIFPSQQSEEIVKNINGNMKAIRYELGTRVR 82

Query: 92  N-LRYVPELRFRYDTSLQSYWKLNALM 117
           + LR +PEL+F  D SL     ++ L+
Sbjct: 83  HQLRIIPELKFFVDDSLDYIENIDKLL 109


>gi|330997439|ref|ZP_08321290.1| ribosome-binding factor A [Paraprevotella xylaniphila YIT 11841]
 gi|329570813|gb|EGG52529.1| ribosome-binding factor A [Paraprevotella xylaniphila YIT 11841]
          Length = 111

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 32  FQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR 91
            Q + +   ++S+S   +S DL +  VY+S+      + +I  +N N+K IR  +G  +R
Sbjct: 23  LQTKAMKGVLVSVSACRISPDLSICRVYLSIFPSRQSEEIIKNINGNMKAIRYELGTRVR 82

Query: 92  N-LRYVPELRFRYDTSLQSYWKLNALM 117
           + LR +PEL+F  D SL     ++ L+
Sbjct: 83  HQLRIIPELKFFVDDSLDYIENIDKLL 109


>gi|153812991|ref|ZP_01965659.1| hypothetical protein RUMOBE_03398 [Ruminococcus obeum ATCC 29174]
 gi|149830938|gb|EDM86028.1| hypothetical protein RUMOBE_03398 [Ruminococcus obeum ATCC 29174]
          Length = 127

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+  EV+  L   I+ NE +D  I   + S+  V ++ DL+    +IS L   
Sbjct: 3   KNSIKNTRINGEVQKEL-STIIRNEVKDPRI-HPMTSVMAVEVAPDLKTCKAFISVLGNK 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + D  I  LN    +IR ++ ++L NLR  PE+RF  D S++    ++ L+
Sbjct: 61  EAKDATIQGLNKAEGYIRRQLAKNL-NLRNTPEIRFILDESIEYGVNMSKLI 111


>gi|240146072|ref|ZP_04744673.1| ribosome-binding factor A [Roseburia intestinalis L1-82]
 gi|257201817|gb|EEV00102.1| ribosome-binding factor A [Roseburia intestinalis L1-82]
 gi|291536071|emb|CBL09183.1| ribosome-binding factor A [Roseburia intestinalis M50/1]
 gi|291538568|emb|CBL11679.1| ribosome-binding factor A [Roseburia intestinalis XB6B4]
          Length = 126

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+  EV+  L  +I   E +D  I+  + S+  V ++ DL+    YIS L  +
Sbjct: 3   KNSIKNTRINGEVQRELSNII-RGEIKDPRIN-PLTSVVAVEVAPDLKTCKAYISVLGDE 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            S  + ++ L     FIR ++ +++ NLR  PE+RF  D S++   K++ ++
Sbjct: 61  ESQAKTLAGLKSAEGFIRSKLAKTV-NLRNTPEIRFVLDQSIEYGVKMSKMI 111


>gi|251772262|gb|EES52832.1| ribosome-binding factor A [Leptospirillum ferrodiazotrophum]
          Length = 120

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           RRA RV  E+R  +  V+     + R+ S   ++I+ V +S DLR ATV+ ++     P 
Sbjct: 8   RRADRVASEIREIMATVVARYFREPRIAS---VTITRVRLSDDLRNATVFFAVFPGEDPQ 64

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +   L  +   +R  + R LR ++Y+P L F +D       ++ +L 
Sbjct: 65  SMGEILERHSPILRKEMARQLR-IKYIPRLSFVHDNGNDEEGRIESLF 111


>gi|152995059|ref|YP_001339894.1| ribosome-binding factor A [Marinomonas sp. MWYL1]
 gi|189039546|sp|A6VU30|RBFA_MARMS RecName: Full=Ribosome-binding factor A
 gi|150835983|gb|ABR69959.1| ribosome-binding factor A [Marinomonas sp. MWYL1]
          Length = 129

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 65/111 (58%), Gaps = 8/111 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  R+G++++  L  +I   +F+ +     +++++EV ++ DL  A +Y + L  D  P+
Sbjct: 7   RTSRIGDQLQKELASLI---QFEVKDPRLGLVTVNEVRVAKDLGYADIYYTVLGKDDQPE 63

Query: 70  RVI---SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +    +AL+    F+R R+ + ++ LR +P LRF YD S+ +  +++AL+
Sbjct: 64  VLAENQAALDSAKGFLRRRLAQEVK-LRVMPHLRFHYDQSVVNGSRMSALI 113


>gi|329942816|ref|ZP_08291595.1| ribosome-binding factor A [Chlamydophila psittaci Cal10]
 gi|332287408|ref|YP_004422309.1| ribosome-binding factor A [Chlamydophila psittaci 6BC]
 gi|313847988|emb|CBY16985.1| ribosome-binding factor A [Chlamydophila psittaci RD1]
 gi|325507251|gb|ADZ18889.1| ribosome-binding factor A [Chlamydophila psittaci 6BC]
 gi|328815076|gb|EGF85065.1| ribosome-binding factor A [Chlamydophila psittaci Cal10]
 gi|328914657|gb|AEB55490.1| ribosome-binding factor A [Chlamydophila psittaci 6BC]
          Length = 120

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           +RR  +V   +R A+  VIL +    + IS   I+++ VC+S DL  A VY+S +P + +
Sbjct: 4   NRRIQKVNSLLREAIANVILKDVKHPK-ISNRWITVTRVCLSKDLHSARVYVSIMPHENT 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
               + AL  + ++I  +  + +  L+Y PE+ F
Sbjct: 63  STETLEALKASARYIAYKASKGVV-LKYFPEINF 95


>gi|119509684|ref|ZP_01628830.1| ribosome-binding factor A [Nodularia spumigena CCY9414]
 gi|119465703|gb|EAW46594.1| ribosome-binding factor A [Nodularia spumigena CCY9414]
          Length = 142

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 3/109 (2%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
           RR  RV E ++  +  ++L+    DR +   ++S++ V +S DL+ A VY+S+   + + 
Sbjct: 5   RRISRVAELIKREVSQMLLHGIKDDR-VGTGMVSVTYVDVSGDLQHAKVYVSIYGTESAK 63

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              ++ L     F+R  +G  +R LR  PE+ F  D S++   K+ +L+
Sbjct: 64  SETMAGLKSATGFVRSELGSRVR-LRRTPEVIFIEDDSIEQGNKVLSLL 111


>gi|124024898|ref|YP_001014014.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL1A]
 gi|166219387|sp|A2BZT9|RBFA_PROM1 RecName: Full=Ribosome-binding factor A
 gi|123959966|gb|ABM74749.1| Ribosome-binding factor A [Prochlorococcus marinus str. NATL1A]
          Length = 123

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
           NSRR  ++   ++  +  +++N   +D  I + +I+I+ V +S DL+ A ++ISL   + 
Sbjct: 3   NSRRVEKLAALLKREISELLVNG-IRDERIHQAMITITSVEVSGDLQHARIFISLFGEEK 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
             D+V+  L     FIR  + R L+ +R  PEL F+ D  +
Sbjct: 62  KKDQVLVGLEEAKGFIRAELARRLQ-MRRSPELVFKIDKGM 101


>gi|254525665|ref|ZP_05137717.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9202]
 gi|221537089|gb|EEE39542.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9202]
          Length = 130

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 24  MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNIKFI 82
           + +IL N+ ++ LI    ++IS++ +S DL+   +YI S   +     ++S LN    FI
Sbjct: 18  ITLILQNDLENDLIRDHFVNISKIDLSGDLQHCKIYITSTAQEKVRKEIVSNLNTAKSFI 77

Query: 83  RGRIGRSLRNLRYVPELRFRYDTSL 107
           R  +G+ +  +R VPE+ F+ D  L
Sbjct: 78  RHSLGKRIE-MRRVPEIIFKEDVVL 101


>gi|116618449|ref|YP_818820.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227431855|ref|ZP_03913879.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|122271351|sp|Q03WH5|RBFA_LEUMM RecName: Full=Ribosome-binding factor A
 gi|116097296|gb|ABJ62447.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227352397|gb|EEJ42599.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 117

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 6/103 (5%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           N +RA R+ +EV+  +  ++L      R+     ++++ V +S DL++AT+Y S+  D++
Sbjct: 3   NPQRAGRLAQEVQRDVTDLLLKRINDPRVKE---VTVTSVELSGDLQIATIYYSILSDLA 59

Query: 68  PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            D  +  + L      IR  +G  L  +   PEL+F  DTS+Q
Sbjct: 60  SDAKKTQAGLEAASGLIRKELGSRL-TVYKTPELKFVRDTSVQ 101


>gi|310778375|ref|YP_003966708.1| ribosome-binding factor A [Ilyobacter polytropus DSM 2926]
 gi|309747698|gb|ADO82360.1| ribosome-binding factor A [Ilyobacter polytropus DSM 2926]
          Length = 117

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 39  RDVISISEVCMSVDLRVATVYIS-LPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLR 94
           + ++S++ V ++ DL+   V  S LP+    V+ + V+  LN    + R RIG  ++ +R
Sbjct: 31  KGIVSVTHVRVTQDLKFVDVSFSVLPMAGQTVNRETVLKGLNETRGYFRKRIGEEIK-IR 89

Query: 95  YVPELRFRYDTSLQSYWKLNALM 117
           +VPE+R   D S++   K++ L+
Sbjct: 90  FVPEVRVHLDDSIEHAVKISKLL 112


>gi|160947560|ref|ZP_02094727.1| hypothetical protein PEPMIC_01495 [Parvimonas micra ATCC 33270]
 gi|158446694|gb|EDP23689.1| hypothetical protein PEPMIC_01495 [Parvimonas micra ATCC 33270]
          Length = 132

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
           N++R  R+  E+   L   I N   +D  I   + +I++V ++ DL +  V I +  D  
Sbjct: 2   NAKRLGRIESEINRVLSDAIYNG-IKDNRIDPSITNITKVSVTNDLGICYVSIGVFGDTK 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + ++ +  L     +++ RI  +L +LR+ P+L F+ D S +    +N L+
Sbjct: 61  TKEKTMKGLESATGYMKKRISETL-DLRHTPKLIFKLDESFEKAALMNELI 110


>gi|62185079|ref|YP_219864.1| ribosome-binding factor A [Chlamydophila abortus S26/3]
 gi|81312755|sp|Q5L628|RBFA_CHLAB RecName: Full=Ribosome-binding factor A
 gi|62148146|emb|CAH63903.1| ribosome-binding factor A [Chlamydophila abortus S26/3]
          Length = 120

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           +RR  +V   +R A+  VIL +    + IS   I+++ VC+S DL  A VY+S +P + +
Sbjct: 4   NRRIKKVNSLLREAIANVILKDVKHPK-ISNRWITVTRVCLSKDLHSARVYVSIMPHENT 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
               + AL  + ++I  +  + +  L+Y PE+ F
Sbjct: 63  STETLEALKASARYIAYKASKGVV-LKYFPEINF 95


>gi|325299551|ref|YP_004259468.1| ribosome-binding factor A [Bacteroides salanitronis DSM 18170]
 gi|324319104|gb|ADY36995.1| ribosome-binding factor A [Bacteroides salanitronis DSM 18170]
          Length = 111

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR- 91
           Q R +   ++S+S V +S D+  A  Y+S+      + ++  +N N+K IR  +G+ +R 
Sbjct: 24  QTRAMHGVLVSVSVVRISPDMSYARGYLSVFPSERAEEIVKNINDNVKSIRYELGKRVRF 83

Query: 92  NLRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PEL+F  D SL     ++ L+
Sbjct: 84  QLRIIPELKFFVDDSLDYAAHIDELL 109


>gi|189459725|ref|ZP_03008510.1| hypothetical protein BACCOP_00353 [Bacteroides coprocola DSM 17136]
 gi|189433572|gb|EDV02557.1| hypothetical protein BACCOP_00353 [Bacteroides coprocola DSM 17136]
          Length = 111

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+S V +S D+  A VY+S+      + ++  +N N+K IR  +G  +R+ LR +PEL
Sbjct: 32  LVSVSVVRISPDMSYARVYLSVFPSERSEEIVKNINDNMKSIRFELGNRVRHQLRIIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D SL     ++ L+
Sbjct: 92  KFFVDDSLDYAAHIDELL 109


>gi|238020387|ref|ZP_04600813.1| hypothetical protein GCWU000324_00267 [Kingella oralis ATCC 51147]
 gi|237867367|gb|EEP68373.1| hypothetical protein GCWU000324_00267 [Kingella oralis ATCC 51147]
          Length = 125

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK +      R  RV E++   L  ++   E +D      +I+I++V ++ D   ATVY 
Sbjct: 1   MKKQQRNGYARVDRVKEQIMRELAELV-RTELKDPRAG--LITINDVEVTRDYSHATVYY 57

Query: 61  SLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM- 117
           ++   ++ DR  SA  L     F+R ++ R +   R VPEL F YD SL+    L+ L+ 
Sbjct: 58  TV---LNGDRAASAEALEHAKGFLRSKLSRRITVFR-VPELHFEYDHSLERGMTLSHLIE 113

Query: 118 ---CLPKIP 123
                P +P
Sbjct: 114 QAAAEPDVP 122


>gi|326516090|dbj|BAJ88068.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 212

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 34  DRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRN 92
           DR +S  + +I++V +S DL+V  VY+S+  D    +V ++ L    K++R +IG+ ++ 
Sbjct: 84  DRYLS-SLTTIADVELSNDLQVCKVYVSVFGDERGKKVAMAGLKDKTKYVRSQIGKRMK- 141

Query: 93  LRYVPELRFRYDTSLQ 108
           LR  PE+RF  D S++
Sbjct: 142 LRLTPEIRFIEDESME 157


>gi|257463894|ref|ZP_05628280.1| ribosome-binding factor A [Fusobacterium sp. D12]
 gi|317061423|ref|ZP_07925908.1| ribosome-binding factor A [Fusobacterium sp. D12]
 gi|313687099|gb|EFS23934.1| ribosome-binding factor A [Fusobacterium sp. D12]
          Length = 122

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 9/87 (10%)

Query: 39  RDVISISEVCMSVDLRVATVYISL--PL------DVSPDRVISALNCNIKFIRGRIGRSL 90
           R ++S+++V ++ DL+ A  Y S+  P+       +  ++++ AL     F+R RI   +
Sbjct: 31  RGLVSVTKVRVTEDLKFADTYFSIMPPIASEGQKTIEREKILEALEEVRGFLRKRIAEEI 90

Query: 91  RNLRYVPELRFRYDTSLQSYWKLNALM 117
            NLR++PE+R + D S++    +  L+
Sbjct: 91  -NLRFIPEIRVKLDDSIEHAIHITKLL 116


>gi|227890637|ref|ZP_04008442.1| ribosome-binding factor A [Lactobacillus salivarius ATCC 11741]
 gi|227867575|gb|EEJ74996.1| ribosome-binding factor A [Lactobacillus salivarius ATCC 11741]
          Length = 119

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++I+ V +S DL+ AT+Y S+  D + D  +V + L+     IRG +G  L ++   PE+
Sbjct: 34  VTITGVEVSGDLQHATIYYSILSDKASDEKKVQTGLDKATSLIRGELGHRL-SIYVTPEI 92

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D S+Q    ++ L+
Sbjct: 93  KFERDKSVQYGDHIDELL 110


>gi|292486838|ref|YP_003529708.1| ribosome-binding factor A [Erwinia amylovora CFBP1430]
 gi|292900764|ref|YP_003540133.1| ribosome-binding factor A [Erwinia amylovora ATCC 49946]
 gi|291200612|emb|CBJ47744.1| ribosome-binding factor A [Erwinia amylovora ATCC 49946]
 gi|291552255|emb|CBA19292.1| Ribosome-binding factor A [Erwinia amylovora CFBP1430]
 gi|312170906|emb|CBX79165.1| Ribosome-binding factor A [Erwinia amylovora ATCC BAA-2158]
          Length = 137

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   ++++S V +S DL  A V+++   D 
Sbjct: 3   KEFGRPQRVSQELQKEI-AIILQREIKDPRLGM-MVTVSGVDVSRDLAYAKVFVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               +   + AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAIKAGLRALGDASGYIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|298493008|ref|YP_003723185.1| ribosome-binding factor A ['Nostoc azollae' 0708]
 gi|298234926|gb|ADI66062.1| ribosome-binding factor A ['Nostoc azollae' 0708]
          Length = 132

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
            +RR  RV E ++  +  ++LN    DR +   ++S+++V +S DL+ A +++S+     
Sbjct: 3   TNRRVSRVAELIKREVSQMLLNGIKDDR-VGTGMVSVTDVDVSGDLQHAKIFVSIYGTQE 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +    ++ L     ++R  +G  +R LR  PE+ F  D SL+   K+ +L+
Sbjct: 62  AKAETMAGLKSATGYVRSELGARVR-LRRTPEVIFVEDRSLERGTKVLSLL 111


>gi|303271249|ref|XP_003054986.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462960|gb|EEH60238.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 160

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 13/122 (10%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEF-------QDRLISRDVISI----SEVCMSVDLRVA 56
           N RR  +V +++R  +  ++  ++        ++R+   +VIS+    ++V +S DL+V 
Sbjct: 6   NPRRVAKVQQQMRREISNMLQTDKNLRNMISPEERMGVDNVISVMATVADVEVSNDLQVV 65

Query: 57  TVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
            V++S+  D    +  I+ L     ++R  IG+ + +LR  PE+RF YD S +   K++A
Sbjct: 66  KVFVSILGDERGKKNAINGLKKMEGYVRRNIGKKV-SLRLTPEIRFVYDDSFERGQKVSA 124

Query: 116 LM 117
           L+
Sbjct: 125 LL 126


>gi|188532505|ref|YP_001906302.1| ribosome-binding factor A [Erwinia tasmaniensis Et1/99]
 gi|238689698|sp|B2VGN3|RBFA_ERWT9 RecName: Full=Ribosome-binding factor A
 gi|188027547|emb|CAO95394.1| Ribosome-binding factor A [Erwinia tasmaniensis Et1/99]
          Length = 137

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   ++++S V +S DL  A V+++   D 
Sbjct: 3   KEFGRPQRVSQELQKEI-AIILQREIKDPRLGM-MVTVSGVDVSRDLAYAKVFVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               +   + AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAIKGGLRALGDASGYIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|319760249|ref|YP_004124187.1| ribosome-binding factor A [Candidatus Blochmannia vafer str. BVAF]
 gi|318038963|gb|ADV33513.1| ribosome-binding factor A [Candidatus Blochmannia vafer str. BVAF]
          Length = 122

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           + S R  R+ +E++  +  VI+  +  D  I   V +IS V +S DLR A V+I+     
Sbjct: 4   RRSNRIQRISQEIQRKI-SVIIQQKVHDPRIG--VPTISGVQVSKDLRYAKVFITFLDKN 60

Query: 67  SPDRVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSL 107
           S + + SA+    K   FIR  + RS+ N R +P L F+YD+SL
Sbjct: 61  SSEEINSAIAILQKASCFIRFLLARSV-NFRIIPILSFKYDSSL 103


>gi|259907043|ref|YP_002647399.1| ribosome-binding factor A [Erwinia pyrifoliae Ep1/96]
 gi|224962665|emb|CAX54120.1| Ribosome-binding factor A [Erwinia pyrifoliae Ep1/96]
 gi|283476839|emb|CAY72677.1| rbfA [Erwinia pyrifoliae DSM 12163]
 gi|310766255|gb|ADP11205.1| ribosome-binding factor A [Erwinia sp. Ejp617]
          Length = 137

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RV +E++  +  +IL  E +D  +   ++++S V +S DL  A V+++   D 
Sbjct: 3   KEFGRPQRVSQELQKEI-AIILQREIKDPRLGM-MVTVSGVDVSRDLAYAKVFVTFLNDK 60

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
               +   + AL     +IR  +G+++R LR VPEL F YD SL    +++ L+ 
Sbjct: 61  DEAAIKAGLRALGDASGYIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114


>gi|291562549|emb|CBL41365.1| ribosome-binding factor A [butyrate-producing bacterium SS3/4]
          Length = 131

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS + +R+  EV+ AL  +I  +E +D  +   + S+ +V ++ DL++   YIS+  D 
Sbjct: 3   KNSVKNIRINGEVQKALSEII-RSELKDPRV-HPMTSVVQVSVTPDLKICKAYISVLADE 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              +  I  L     FIR ++ + + NLR  P++ F  D S++   +++ L+
Sbjct: 61  EQAKDTIRGLKSAEGFIRTQLAKKV-NLRNTPQIFFVLDQSIEYGVRMSKLI 111


>gi|189183521|ref|YP_001937306.1| ribosome-binding factor A [Orientia tsutsugamushi str. Ikeda]
 gi|189180292|dbj|BAG40072.1| ribosome-binding factor A [Orientia tsutsugamushi str. Ikeda]
          Length = 120

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK      S + LR    +R AL+ V+ +N+    L     I++++V       +   YI
Sbjct: 1   MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECK-ITVTKVLAQAGQGMYHCYI 59

Query: 61  SLPLD---VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
            LP     VS D+++ A+N ++  IR  I + + NL+Y PELR  YD
Sbjct: 60  -LPFSNSKVSQDKLMHAINDSLPIIRRMITQKI-NLKYSPELRIFYD 104


>gi|257452232|ref|ZP_05617531.1| ribosome-binding factor A [Fusobacterium sp. 3_1_5R]
 gi|257465973|ref|ZP_05630284.1| ribosome-binding factor A [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917129|ref|ZP_07913369.1| ribosome-binding factor A [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058775|ref|ZP_07923260.1| ribosome-binding factor A [Fusobacterium sp. 3_1_5R]
 gi|313684451|gb|EFS21286.1| ribosome-binding factor A [Fusobacterium sp. 3_1_5R]
 gi|313691004|gb|EFS27839.1| ribosome-binding factor A [Fusobacterium gonidiaformans ATCC 25563]
          Length = 122

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 39  RDVISISEVCMSVDLRVATVYISL--PLD------VSPDRVISALNCNIKFIRGRIGRSL 90
           R ++S+++V ++ DL+ A  Y S+  P+       V  ++++ AL     F R RI   +
Sbjct: 31  RGLVSVTKVRVTEDLKFADTYFSIMPPIASEGQKPVEREKILEALEEVRGFFRKRIAEEI 90

Query: 91  RNLRYVPELRFRYDTSLQSYWKLNALM 117
            NLR+VPE+R + D S++    +  L+
Sbjct: 91  -NLRFVPEVRVKLDDSIEHAIHITKLL 116


>gi|237736661|ref|ZP_04567142.1| ribosome-binding factor A [Fusobacterium mortiferum ATCC 9817]
 gi|229420523|gb|EEO35570.1| ribosome-binding factor A [Fusobacterium mortiferum ATCC 9817]
          Length = 120

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 39  RDVISISEVCMSVDLRVATVYISL-------PLDVSPDRVISALNCNIKFIRGRIGRSLR 91
           R ++S++ + ++ DL+ A VY S+          V  + V+  LN    ++R R+   + 
Sbjct: 31  RGLVSVTNIRVTEDLKFADVYFSIMSGQMNGEKAVDKETVLEGLNQIKGYLRKRVAEEI- 89

Query: 92  NLRYVPELRFRYDTSLQSYWKLNALM 117
            +RY+PE+R + D S++   K++ L+
Sbjct: 90  EIRYIPEIRVKLDDSIEHAIKISKLL 115


>gi|304384251|ref|ZP_07366662.1| ribosome-binding factor A [Prevotella marshii DSM 16973]
 gi|304334567|gb|EFM00849.1| ribosome-binding factor A [Prevotella marshii DSM 16973]
          Length = 154

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q R +   ++S++   +S DL + T Y+S+      + ++  +N N + IR  +G  +RN
Sbjct: 54  QTRSMHGVMVSVTRCRISPDLSICTGYLSIFPSERGEEILKNINANAQTIRYDLGTRVRN 113

Query: 93  -LRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PE+RF  D SL    K++ L+
Sbjct: 114 QLRIIPEVRFFLDDSLDYIEKIDRLL 139


>gi|114331631|ref|YP_747853.1| ribosome-binding factor A [Nitrosomonas eutropha C91]
 gi|122313590|sp|Q0AFJ4|RBFA_NITEC RecName: Full=Ribosome-binding factor A
 gi|114308645|gb|ABI59888.1| ribosome-binding factor A [Nitrosomonas eutropha C91]
          Length = 117

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV-YISLPL 64
           PK+  R LRV ++V+  L  +I  NE  D  I   +I+++ V ++ D   A V Y +L  
Sbjct: 2   PKDFSRTLRVADQVQRELASLI-QNEIMDPRIG--MITLTGVEVTRDYTYAKVFYTTLGG 58

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +       L     F+R ++   +R LR +P+L+F YD S++   KL+ L+
Sbjct: 59  NENAQLAEEGLKRAAGFLRSQLAGKIR-LRIIPKLQFVYDESIERGIKLSRLI 110


>gi|295136509|ref|YP_003587185.1| ribosome-binding factor A [Zunongwangia profunda SM-A87]
 gi|294984524|gb|ADF54989.1| ribosome-binding factor A [Zunongwangia profunda SM-A87]
          Length = 130

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           + R  ++G  ++  L   ILNN  +D  I+  +IS+S+V ++ DL +A  Y+S+      
Sbjct: 3   TNRQKKIGGVLQKDLAE-ILNNNLRDAGINGILISVSKVKVTTDLSIAKAYLSVFPQKHA 61

Query: 69  DRVISALNCNIKFIRGRIG-RSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
             +++ LN     I+ ++  R+   LR +P+L F  D SL+    +   M   + P++
Sbjct: 62  GDILTELNEVKSKIKHQMALRTKNQLRKMPDLSFFIDDSLEYIENIEKSMKGDENPIS 119


>gi|228473890|ref|ZP_04058632.1| ribosome-binding factor A [Capnocytophaga gingivalis ATCC 33624]
 gi|228274731|gb|EEK13565.1| ribosome-binding factor A [Capnocytophaga gingivalis ATCC 33624]
          Length = 130

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
           IL    Q+  ++  ++S+++V ++VDL +A VYIS+        ++ A+  N   I+  +
Sbjct: 20  ILGRAVQNGGLTNLILSVTKVAITVDLTLAKVYISVFPSEQGKEILKAIQSNSFQIKHEV 79

Query: 87  GRSLRN-LRYVPELRFRYDTSLQ 108
            + +R+ LR +P+L F  D SL+
Sbjct: 80  AQRVRHQLRKMPDLSFFLDDSLE 102


>gi|56707230|ref|YP_169126.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|89257071|ref|YP_514433.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
           LVS]
 gi|110669700|ref|YP_666257.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|115315427|ref|YP_764150.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134301265|ref|YP_001121233.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503281|ref|YP_001429346.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009458|ref|ZP_02274389.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
           FSC200]
 gi|187931007|ref|YP_001890991.1| ribosome-binding factor A [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224456291|ref|ZP_03664764.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254368309|ref|ZP_04984328.1| ribosome binding factor A [Francisella tularensis subsp. holarctica
           257]
 gi|254369908|ref|ZP_04985917.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254369915|ref|ZP_04985923.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874069|ref|ZP_05246779.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|290954353|ref|ZP_06558974.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312217|ref|ZP_06803017.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|61214713|sp|Q5NIL6|RBFA_FRATT RecName: Full=Ribosome-binding factor A
 gi|122324587|sp|Q0BK71|RBFA_FRATO RecName: Full=Ribosome-binding factor A
 gi|122500221|sp|Q2A1G9|RBFA_FRATH RecName: Full=Ribosome-binding factor A
 gi|123063628|sp|Q14K19|RBFA_FRAT1 RecName: Full=Ribosome-binding factor A
 gi|166218438|sp|A7NEI7|RBFA_FRATF RecName: Full=Ribosome-binding factor A
 gi|166218440|sp|A4IW11|RBFA_FRATW RecName: Full=Ribosome-binding factor A
 gi|238691527|sp|B2SEW8|RBFA_FRATM RecName: Full=Ribosome-binding factor A
 gi|54114151|gb|AAV29709.1| NT02FT1759 [synthetic construct]
 gi|56603722|emb|CAG44684.1| Ribosome-binding factor A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|89144902|emb|CAJ80247.1| Ribosome-binding factor A [Francisella tularensis subsp. holarctica
           LVS]
 gi|110320033|emb|CAL08067.1| Ribosome-binding factor A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|115130326|gb|ABI83513.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134049042|gb|ABO46113.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134254118|gb|EBA53212.1| ribosome binding factor A [Francisella tularensis subsp. holarctica
           257]
 gi|151568161|gb|EDN33815.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156253884|gb|ABU62390.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157122878|gb|EDO66995.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
           FSC022]
 gi|187711916|gb|ACD30213.1| ribosome-binding factor A [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254840068|gb|EET18504.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158338|gb|ADA77729.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 143

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 43  SISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
           +I+EV +S DL  A +Y +       + +  A   +  F R  I +SL +LR VP L+F 
Sbjct: 35  TITEVDLSKDLSYAKIYYTCLAIEDAEYIDKAFEKSKGFFRSSIAKSL-SLRIVPNLKFI 93

Query: 103 YDTSLQSYWKLNALMCLPKIPVALE 127
           YDTSL    ++       KI  ALE
Sbjct: 94  YDTSLDYGMQME-----EKIQQALE 113


>gi|206889505|ref|YP_002249675.1| ribosome-binding factor A [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|226723613|sp|B5YHT9|RBFA_THEYD RecName: Full=Ribosome-binding factor A
 gi|206741443|gb|ACI20500.1| ribosome-binding factor A [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 118

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +RA R+   ++  +  +IL+     RL     I++++V +S DLR+A V+IS+       
Sbjct: 5   KRAQRLKVLLKEEVAEIILHKIKDPRL---GFITVTDVELSDDLRIAKVFISVLKTEDRQ 61

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  LN    F+R  I + LR ++ +P   F +D S+   ++++ L+
Sbjct: 62  LTLQILNDAKGFVRSEIAKRLR-IKIIPTFEFLFDESIDRGFRIDQLL 108


>gi|218133593|ref|ZP_03462397.1| hypothetical protein BACPEC_01462 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990968|gb|EEC56974.1| hypothetical protein BACPEC_01462 [Bacteroides pectinophilus ATCC
           43243]
          Length = 136

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M+N   KNS +  R+  EV+  L  +I +NE +D  I   + S+  V ++ DL+    YI
Sbjct: 1   MENDMRKNSIKNTRINGEVQRELSNII-HNEIKDPRI-HPMTSVVTVEVAPDLKTCKAYI 58

Query: 61  SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S+  D    +  I+ L     +IR  +  ++ NLR  PE+RF  D S++   +++ L+
Sbjct: 59  SVLGDEKAQQDTIAGLKSAEGYIRRELAHTV-NLRNTPEIRFILDQSIEYGVRMSRLI 115


>gi|118498221|ref|YP_899271.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
           U112]
 gi|194324405|ref|ZP_03058178.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
           FTE]
 gi|208780248|ref|ZP_03247590.1| ribosome-binding factor A [Francisella novicida FTG]
 gi|254373564|ref|ZP_04989051.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375029|ref|ZP_04990509.1| ribosome-binding factor A [Francisella novicida GA99-3548]
 gi|166218439|sp|A0Q8F2|RBFA_FRATN RecName: Full=Ribosome-binding factor A
 gi|118424127|gb|ABK90517.1| ribosome-binding factor A [Francisella novicida U112]
 gi|151571289|gb|EDN36943.1| ribosome-binding factor A [Francisella novicida GA99-3549]
 gi|151572747|gb|EDN38401.1| ribosome-binding factor A [Francisella novicida GA99-3548]
 gi|194321470|gb|EDX18955.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
           FTE]
 gi|208743897|gb|EDZ90199.1| ribosome-binding factor A [Francisella novicida FTG]
 gi|332678957|gb|AEE88086.1| Ribosome-binding factor A [Francisella cf. novicida Fx1]
          Length = 143

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 43  SISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
           +I+EV +S DL  A +Y +       + +  A   +  F R  I +SL +LR VP L+F 
Sbjct: 35  TITEVDLSKDLSYAKIYYTCLAIEDAEYIDKAFEKSKGFFRSSIAKSL-SLRIVPNLKFI 93

Query: 103 YDTSLQSYWKLNALMCLPKIPVALE 127
           YDTSL    ++       KI  ALE
Sbjct: 94  YDTSLDYGMQME-----EKIQQALE 113


>gi|73667085|ref|YP_303101.1| ribosome-binding factor A [Ehrlichia canis str. Jake]
 gi|72394226|gb|AAZ68503.1| ribosome-binding factor A [Ehrlichia canis str. Jake]
          Length = 115

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 7/109 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRD-VISISEVCMSVDLRVATVYISLPLDVS-P 68
           R L+V   +  A+  V++    QD  +S + +I+IS+V +S D+R A V+I +  D +  
Sbjct: 9   RNLKVASVLNRAISKVLM----QDICLSNNHLITISKVEVSNDIRNANVFIIISQDCTDK 64

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + VI  LN +  FIR  I   + +LRY+P L F+ D    +  K+N ++
Sbjct: 65  EAVIKELNDSSYFIRKAIFPYV-DLRYIPRLYFKQDYCFDNLVKINQIL 112


>gi|315641139|ref|ZP_07896218.1| ribosome-binding factor A [Enterococcus italicus DSM 15952]
 gi|315483147|gb|EFU73664.1| ribosome-binding factor A [Enterococcus italicus DSM 15952]
          Length = 115

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVIS--ALNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++I++V ++ DL+ AT+Y S+  D++ DR  +   L  +   IR  +G+ L +L   PEL
Sbjct: 33  VTITDVHVTGDLQQATIYYSILSDLTSDRQKAQMGLEKSTGLIRRELGQGL-SLYKTPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
            F  D S+Q   K++ L+
Sbjct: 92  IFELDQSVQYGNKIDELL 109


>gi|332184776|gb|AEE27030.1| Ribosome-binding factor A [Francisella cf. novicida 3523]
          Length = 143

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 43  SISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
           +I+EV +S DL  A +Y +       + +  A   +  F R  I +SL +LR VP L+F 
Sbjct: 35  TITEVDLSKDLSYAKIYYTCLAVEDAEYIDKAFEKSKGFFRSSIAKSL-SLRIVPNLKFI 93

Query: 103 YDTSLQSYWKLNALMCLPKIPVALE 127
           YDTSL    ++       KI  ALE
Sbjct: 94  YDTSLDYGMQME-----EKIQQALE 113


>gi|71276361|ref|ZP_00652638.1| Ribosome-binding factor A [Xylella fastidiosa Dixon]
 gi|71898656|ref|ZP_00680826.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
 gi|170729434|ref|YP_001774867.1| ribosome-binding factor A [Xylella fastidiosa M12]
 gi|238687909|sp|B0U1Q9|RBFA_XYLFM RecName: Full=Ribosome-binding factor A
 gi|71162823|gb|EAO12548.1| Ribosome-binding factor A [Xylella fastidiosa Dixon]
 gi|71731603|gb|EAO33664.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
 gi|167964227|gb|ACA11237.1| ribosomal-binding factor A [Xylella fastidiosa M12]
          Length = 125

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +S+S+V ++ D+  A V++++         ++ L    + +R ++ +++R LR+VPEL F
Sbjct: 36  MSVSDVEVTRDMAHAKVFVTVLQAERSFEAVAGLKALARELRMQLAQTMR-LRFVPELHF 94

Query: 102 RYDTSLQSYWKLNALM 117
            YD SL    ++N L+
Sbjct: 95  HYDDSLDRGERINTLL 110


>gi|51246464|ref|YP_066348.1| ribosome-binding factor A [Desulfotalea psychrophila LSv54]
 gi|61214924|sp|Q6AJY5|RBFA_DESPS RecName: Full=Ribosome-binding factor A
 gi|50877501|emb|CAG37341.1| related to ribosome-binding factor A [Desulfotalea psychrophila
           LSv54]
          Length = 140

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 19/107 (17%)

Query: 10  RRALRVGEEVRSALMWVILNN----EFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           +R+ RV + +R  L  ++L      + QD       + IS V  + DL +  +Y ++   
Sbjct: 22  KRSTRVADAIRKELAVLLLEKIRDPKLQD-------VGISRVTATDDLTIVKIYYTI--- 71

Query: 66  VSPDRVISALN----CNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             P + + A++        FIR  + R+L N+RY P L+F YD + +
Sbjct: 72  YGPHKHVKAVDKAFLAATGFIRSHLARTL-NMRYTPNLQFCYDKTAE 117


>gi|77165584|ref|YP_344109.1| ribosome-binding factor A [Nitrosococcus oceani ATCC 19707]
 gi|254433845|ref|ZP_05047353.1| ribosome-binding factor A [Nitrosococcus oceani AFC27]
 gi|123593841|sp|Q3J9B7|RBFA_NITOC RecName: Full=Ribosome-binding factor A
 gi|76883898|gb|ABA58579.1| ribosome-binding factor A [Nitrosococcus oceani ATCC 19707]
 gi|207090178|gb|EDZ67449.1| ribosome-binding factor A [Nitrosococcus oceani AFC27]
          Length = 127

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           RA RVGE ++  L   +   E +D  +   ++++S V +S DLR A  Y++ L  +    
Sbjct: 7   RARRVGELLQRELAR-LFQEELKDPRVK--LVTVSHVRVSPDLRQAKAYVTFLGKEEDTQ 63

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             ++ LN    F++  + + +  LR +P L+F YD S++   +L+AL+
Sbjct: 64  EQLAVLNKAAGFLQHGLSQRV-ELRVIPRLQFVYDDSIERGRRLSALI 110


>gi|160892793|ref|ZP_02073583.1| hypothetical protein CLOL250_00324 [Clostridium sp. L2-50]
 gi|156865834|gb|EDO59265.1| hypothetical protein CLOL250_00324 [Clostridium sp. L2-50]
          Length = 129

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  R+  EV+  L  +I + E +D  I+  + S+ E  ++ DL+    YIS+  D 
Sbjct: 3   KNSVKNTRINAEVQRELSRII-SREIKDPRIN-PMTSVVEAVVTPDLKYCKAYISVLGDQ 60

Query: 67  -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            S +  +  LN  + FIR  +  S+ NLR  PE+ F  D S++
Sbjct: 61  DSVNSTLEGLNSAMGFIRRELAHSI-NLRNTPEITFIMDQSIE 102


>gi|254411561|ref|ZP_05025337.1| ribosome-binding factor A [Microcoleus chthonoplastes PCC 7420]
 gi|196181283|gb|EDX76271.1| ribosome-binding factor A [Microcoleus chthonoplastes PCC 7420]
          Length = 132

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
            +RR  RV   ++  +  ++L++   DR +   ++S+++V +S DL+ A +Y+S+   + 
Sbjct: 3   TNRRVSRVSSLIQQEVSQMLLHDIKDDR-VGAGMVSVTDVDVSGDLQHAKIYVSIYGTEE 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +    ++ L     F+R  +GR +R LR  PE+ F  D  L+   ++  L+
Sbjct: 62  AKSETMAGLQSATGFVRRELGRRVR-LRRTPEVVFIEDRGLERGARMLTLL 111


>gi|326335659|ref|ZP_08201846.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692425|gb|EGD34377.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 130

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
           IL    Q   ++  +IS+++V ++VDL +A VYIS+  +     ++SA+  N   I+  +
Sbjct: 20  ILGRAVQAGGLTNLIISVTKVAVTVDLTLAKVYISVFPNERGVEILSAIQSNNSQIKHEV 79

Query: 87  GRSLR-NLRYVPELRFRYDTSLQ 108
            +  R  LR +P+L F  D SL+
Sbjct: 80  AQRTRYQLRKMPDLSFFLDDSLE 102


>gi|291519302|emb|CBK74523.1| ribosome-binding factor A [Butyrivibrio fibrisolvens 16/4]
          Length = 124

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+ EEV   L  +I   E +D  IS  V S+  V ++ DL+    YIS L  D
Sbjct: 3   KNSVKNTRINEEVMRELSNII-RLEVKDPRIS-PVTSVVSVEVAPDLKTCKAYISVLGDD 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  + I  L  +  FIR  +   + NLR  PE+ F  D S+    K++ L+
Sbjct: 61  EAVAKTIEGLKSSAGFIRRELAHRI-NLRNTPEITFVSDQSIAYAAKMSKLI 111


>gi|303232067|ref|ZP_07318770.1| ribosome-binding factor A [Veillonella atypica ACS-049-V-Sch6]
 gi|302513173|gb|EFL55212.1| ribosome-binding factor A [Veillonella atypica ACS-049-V-Sch6]
          Length = 118

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 43  SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           ++++V ++ DLR AT+Y+SL   D   +  + AL      +R  +G+ L+ LR++P + F
Sbjct: 34  TVTDVHVTGDLREATIYVSLFGSDKEKEDTLIALKHASGHVRTELGKVLK-LRHIPTITF 92

Query: 102 RYDTSLQSYWKLNALM 117
             D+SL     + +L+
Sbjct: 93  DKDSSLDYSMHIESLL 108


>gi|119713527|gb|ABL97580.1| ribosome-binding factor A [uncultured marine bacterium EB0_35D03]
          Length = 112

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 7/113 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           + S RA RV E +R  L+ ++L+ E +D  +    + I++V +S DL  A V+ S+  D 
Sbjct: 4   QTSYRAERVNELIRRELV-LLLSKETKDPRLQE--VVITDVKVSRDLTSAKVFFSV--DA 58

Query: 67  SPDRVISAL-NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           S  + ++ L N    F R  + + L +LR+ P L F YDT+  +  +++ L+ 
Sbjct: 59  SAQKTVTTLLNKASGFFRSSLSKVL-DLRHTPALIFIYDTAPNTGARMDDLLS 110


>gi|255284462|ref|ZP_05349017.1| ribosome-binding factor A [Bryantella formatexigens DSM 14469]
 gi|255265007|gb|EET58212.1| ribosome-binding factor A [Bryantella formatexigens DSM 14469]
          Length = 130

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  RV  EV+  L  +I  +E +D  I   + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRVNSEVQRELAGII-RSEIKDPRI-HPLTSVVLVEVAPDLKTCKAYISVLGDE 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              +  +  L   + FIR ++  +L NLR  PE+RF  D S++   +++ L+
Sbjct: 61  QAQQSTLEGLRSAVGFIRRQLAHNL-NLRNTPEIRFILDQSIEYGVRMSKLI 111


>gi|305665853|ref|YP_003862140.1| putative ribosome-binding factor A [Maribacter sp. HTCC2170]
 gi|88710624|gb|EAR02856.1| putative ribosome-binding factor A [Maribacter sp. HTCC2170]
          Length = 130

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIG-RSLRNLRYVPEL 99
           +IS+S+V ++ DL +A VYIS+  +     ++  +  N   I+  +  R+   LR VPEL
Sbjct: 34  LISVSKVTVTTDLSIAKVYISIFPNKDSKELLEGIQSNQPLIKHELAQRTKHQLRRVPEL 93

Query: 100 RFRYDTSL 107
            F  D SL
Sbjct: 94  LFFLDDSL 101


>gi|332653583|ref|ZP_08419328.1| ribosome-binding factor A [Ruminococcaceae bacterium D16]
 gi|332518729|gb|EGJ48332.1| ribosome-binding factor A [Ruminococcaceae bacterium D16]
          Length = 130

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R  R+ EE++  L  +I     +D  ++  +IS++ V  + DL+ A V+IS+ LD S 
Sbjct: 3   SNRIGRINEEIQRELSSLIPT--VKDPRVT-GMISVTAVETTPDLKYAKVHISV-LDKSN 58

Query: 69  D-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
           + +V+  L     ++R  +GR+L NLR  P+L F  D S+     + +++  P +
Sbjct: 59  EAQVLKGLKSAGGYLRRELGRTL-NLRNTPQLSFVPDDSIDKGAHILSMLRDPNV 112


>gi|295094746|emb|CBK83837.1| ribosome-binding factor A [Coprococcus sp. ART55/1]
          Length = 137

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  R+  EV+  L  +I + E +D  IS  + S+ +V ++ DL+    YIS+  D 
Sbjct: 3   KNSVKNNRINGEVQRELSRII-SREIKDPRISP-MTSVVDVVVTPDLKFCKAYISVLGDQ 60

Query: 67  SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              D   + LN  + +IR  +  S+ NLR  PE+ F  D S++
Sbjct: 61  DAVDSTFAGLNSAMGYIRRELAHSV-NLRNTPEITFIMDQSIE 102


>gi|289207911|ref|YP_003459977.1| ribosome-binding factor A [Thioalkalivibrio sp. K90mix]
 gi|288943542|gb|ADC71241.1| ribosome-binding factor A [Thioalkalivibrio sp. K90mix]
          Length = 147

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 13/116 (11%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRD----VISISEVCMSVDLRVATVYIS- 61
           ++  R+ RVG++++  L  +I       RL  +D    +I++++V +S DL  A V+ + 
Sbjct: 5   RDFHRSDRVGDQIQRELAELI-------RLEVKDPRVGMITLADVEVSRDLAHAKVFFTQ 57

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           L  +         LN    F+R  +G+ +R LR VP+LRF YD + +   ++++L+
Sbjct: 58  LGGEEKGREAQQGLNHAAGFLRRALGQRMR-LRSVPQLRFVYDDTPERGARMSSLI 112


>gi|68171593|ref|ZP_00544965.1| Ribosome-binding factor A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658124|ref|YP_507376.1| ribosome-binding factor A [Ehrlichia chaffeensis str. Arkansas]
 gi|67998988|gb|EAM85667.1| Ribosome-binding factor A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599581|gb|ABD45050.1| ribosome-binding factor A [Ehrlichia chaffeensis str. Arkansas]
          Length = 114

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 6/110 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
           S R L+V   +  A+  V++    QD  +    I+IS+V +S D+R ATV++ +  + S 
Sbjct: 7   SFRNLKVASVLNRAISRVLM----QDICLFNSHITISKVEVSSDIRDATVFVIISQECSD 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +I  LN +  FIR  I  S  +LRY+P L F+ D    +  ++N ++
Sbjct: 63  KEALIKELNDSSYFIRKAIF-SYVDLRYIPRLYFKLDYCFDNLVRVNQIL 111


>gi|256819620|ref|YP_003140899.1| ribosome-binding factor A [Capnocytophaga ochracea DSM 7271]
 gi|315224986|ref|ZP_07866805.1| ribosome-binding factor A [Capnocytophaga ochracea F0287]
 gi|256581203|gb|ACU92338.1| ribosome-binding factor A [Capnocytophaga ochracea DSM 7271]
 gi|314945099|gb|EFS97129.1| ribosome-binding factor A [Capnocytophaga ochracea F0287]
          Length = 130

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGR-SLRNLRYVPEL 99
           +IS+++V ++VDL VA VY+S+  +     V+  +  N   I+  + + +    R +PEL
Sbjct: 34  LISVTKVNVTVDLSVAKVYLSVFPEAKAAEVLKGVTSNAPLIKHELSQITKHQFRRMPEL 93

Query: 100 RFRYDTSLQ 108
            F  D SLQ
Sbjct: 94  YFYIDDSLQ 102


>gi|260424716|ref|ZP_05778979.1| ribosome-binding factor A [Dialister invisus DSM 15470]
 gi|260402930|gb|EEW96477.1| ribosome-binding factor A [Dialister invisus DSM 15470]
          Length = 119

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 42  ISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           ++++ V ++ DLR ATVY+SL   +      +  LN +  FIR  +G  L+ + Y PE+ 
Sbjct: 33  VTVTGVKLTGDLREATVYVSLFGQEEERKESLMVLNKSKGFIRKELGTRLK-VYYTPEIS 91

Query: 101 FRYDTSLQSYWKLNALM 117
           F  D SL     +  L+
Sbjct: 92  FEEDKSLDYGMHIEGLL 108


>gi|323342025|ref|ZP_08082258.1| ribosome-binding factor A [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464450|gb|EFY09643.1| ribosome-binding factor A [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 111

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +SI+EV ++ D   AT+Y+S   D      + ALN     +R  + ++L ++R  PEL F
Sbjct: 32  VSITEVDVTNDFSFATIYVSFLEDSKKQPGMDALNKAKGMLRSEVSKAL-SIRRTPELIF 90

Query: 102 RYDTSLQSYWKLNALM 117
           + D S +   K++ ++
Sbjct: 91  KLDESSEYGAKIDGIL 106


>gi|331701350|ref|YP_004398309.1| ribosome-binding factor A [Lactobacillus buchneri NRRL B-30929]
 gi|329128693|gb|AEB73246.1| Ribosome-binding factor A [Lactobacillus buchneri NRRL B-30929]
          Length = 117

 Score = 42.0 bits (97), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++++ V ++ DL+ AT+Y S+  D   D   +A  L      IRG +G  L ++   PE+
Sbjct: 33  VTLTGVEVTGDLQQATIYYSILSDKKEDEETTAKGLEKASGLIRGELGHRL-SIYKTPEI 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  DTS+Q   K++ L+
Sbjct: 92  KFELDTSVQYGDKIDRLI 109


>gi|157412469|ref|YP_001483335.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9215]
 gi|166918677|sp|A8G2B8|RBFA_PROM2 RecName: Full=Ribosome-binding factor A
 gi|157387044|gb|ABV49749.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9215]
          Length = 130

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 24  MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNIKFI 82
           + +IL NE +  LIS   ++IS++ +S DL+   +YI S   +     ++S LN     I
Sbjct: 18  ITLILQNELEIDLISDHFVNISKIDLSGDLQHCKIYITSTAQEKVKKEIVSNLNTAKSSI 77

Query: 83  RGRIGRSLRNLRYVPELRFRYDTSL 107
           R  +G+ +  +R VPE+ F+ D  L
Sbjct: 78  RHSLGKRIE-MRRVPEIIFKDDVVL 101


>gi|85860519|ref|YP_462721.1| ribosome-binding factor A [Syntrophus aciditrophicus SB]
 gi|123517498|sp|Q2LWT9|RBFA_SYNAS RecName: Full=Ribosome-binding factor A
 gi|85723610|gb|ABC78553.1| ribosome-binding factor A [Syntrophus aciditrophicus SB]
          Length = 123

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 5/109 (4%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY-ISLPLDVSP 68
           +RA RV + V+  +  ++L    +D  +SR  ++++ V +S DLR A ++ + +  D   
Sbjct: 5   KRADRVADLVKMEIADILLRR-IRDPRVSR--LTVTGVKVSDDLRTARIFFVEMGEDSCH 61

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              +  L     FIR  +G+ L+ LRYVP+L F+ D+S     +++ L+
Sbjct: 62  PETLEGLQKAGGFIRKELGKRLK-LRYVPDLIFKPDSSFAYGSRIDQLI 109


>gi|72383316|ref|YP_292671.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL2A]
 gi|123620526|sp|Q46HR0|RBFA_PROMT RecName: Full=Ribosome-binding factor A
 gi|72003166|gb|AAZ58968.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL2A]
          Length = 123

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
           NSRR  ++   ++  +  +++N   +D  I + +I+I+ V +S DL+ A ++ISL   + 
Sbjct: 3   NSRRVEKLAALLKREVSELLVNG-IRDERIHQAMITITSVEVSGDLQHAKIFISLFGEEK 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
             D V+  L     FIR  + + L+ +R  PEL F+ D  +
Sbjct: 62  KKDEVLVGLEEAKGFIRAELAQRLQ-MRRSPELVFKIDKGM 101


>gi|270158097|ref|ZP_06186754.1| ribosome-binding factor A [Legionella longbeachae D-4968]
 gi|269990122|gb|EEZ96376.1| ribosome-binding factor A [Legionella longbeachae D-4968]
          Length = 108

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           ++IS V ++ DL  A VY ++ L+   + V S LN    ++R  + RS+  LR VP+L F
Sbjct: 23  VTISAVKVAADLGHAKVYFTV-LNDDREMVASILNAASSYLRSVLARSI-TLRTVPQLHF 80

Query: 102 RYDTSLQSYWKLNALM 117
            YD S++   +L+ L+
Sbjct: 81  VYDESIEYGQRLSRLI 96


>gi|119898397|ref|YP_933610.1| ribosome-binding factor A [Azoarcus sp. BH72]
 gi|166218420|sp|A1K7B8|RBFA_AZOSB RecName: Full=Ribosome-binding factor A
 gi|119670810|emb|CAL94723.1| RbfA protein [Azoarcus sp. BH72]
          Length = 126

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPL 64
           PK   R+ RV E++R  L  +I   E +D  +    I++++V +S D   A V+  S+  
Sbjct: 2   PKEYSRSQRVVEQIRRELAELI-RLEVKDPRVG--FITLTDVEISPDYAHAKVFFTSMTG 58

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + S   ++  L     F+R  +GR +R +   PEL F YD S++   +L+ L+
Sbjct: 59  EESVPEILQGLRRASGFLRRELGRRVR-IHTTPELHFHYDRSVEEGSRLSRLI 110


>gi|300173101|ref|YP_003772267.1| ribosome-binding factor A [Leuconostoc gasicomitatum LMG 18811]
 gi|299887480|emb|CBL91448.1| ribosome-binding factor A [Leuconostoc gasicomitatum LMG 18811]
          Length = 117

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 14/107 (13%)

Query: 8   NSRRALRVGEEVR----SALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           N +RA R+ +EV+    S L+  I +   QD       ++++ V +S DL++AT+Y S+ 
Sbjct: 3   NPQRAGRLAQEVQRDVTSLLLKRINDPRVQD-------VTVTSVELSGDLQIATIYYSIL 55

Query: 64  LDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            D++ D  +  + L      IR  +G  L  +   PEL+F  D S+Q
Sbjct: 56  SDLASDGKKAQAGLEAASGLIRKELGSRL-TVYKTPELKFVRDQSVQ 101


>gi|227872006|ref|ZP_03990391.1| ribosome-binding factor A [Oribacterium sinus F0268]
 gi|227842149|gb|EEJ52394.1| ribosome-binding factor A [Oribacterium sinus F0268]
          Length = 138

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK  + KN RR     E+VR  L  +I   E +D  +S     ++ V ++ DL+   V++
Sbjct: 1   MKKLSFKNQRR----NEDVRRCLSLLI-REEVKDSRVS-PFCDVTGVDLTPDLQYCKVFV 54

Query: 61  S-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S L  +    + I  L     F+R  +  SL NLR+ PEL+F  D S++   +++AL+
Sbjct: 55  SCLGSEEELGKTIEGLKAAGGFLRRELAGSL-NLRHTPELQFIADHSVEYGSRMDALI 111


>gi|326692684|ref|ZP_08229689.1| ribosome-binding factor A [Leuconostoc argentinum KCTC 3773]
          Length = 117

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           N +RA R+ +E++  +  ++L      R+  +DV +++ V +S DL++AT+Y S+  D++
Sbjct: 3   NPQRAGRLAQEIQRDVTDLLLKRINDPRV--KDV-TVTSVELSGDLQIATIYYSILSDLA 59

Query: 68  PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            D  +  + L      IR  +G  L  +   PELRF  D S+Q
Sbjct: 60  SDGQKAQAGLEAASGLIRKELGARL-TVYKTPELRFVRDQSVQ 101


>gi|295110272|emb|CBL24225.1| ribosome-binding factor A [Ruminococcus obeum A2-162]
          Length = 127

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+  EV+  L  +I   E +D  I   + S+  V ++ DL+    YIS L   
Sbjct: 3   KNSIKNTRINGEVQKELSSII-RGEIKDPRI-HPMTSVMAVEVAPDLKTCRAYISVLGNQ 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +  I  LN    +IR ++ R+L NLR  PE+RF  D S++    ++ L+
Sbjct: 61  EAKEATIRGLNSAEGYIRRQLARNL-NLRNTPEIRFILDESIEYGVNMSKLI 111


>gi|120437657|ref|YP_863343.1| ribosome-binding factor A [Gramella forsetii KT0803]
 gi|171460864|sp|A0M6N1|RBFA_GRAFK RecName: Full=Ribosome-binding factor A
 gi|117579807|emb|CAL68276.1| ribosome-binding factor A [Gramella forsetii KT0803]
          Length = 131

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
           IL N  ++   +  +IS+S+V ++ DL +A  Y+S+      + VI  +N N   I+  +
Sbjct: 21  ILQNSLRESGRTGILISVSKVRVTTDLSIAKAYVSIFPSKHQEEVIKEINENKSQIKHEM 80

Query: 87  GRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
            +  R+ LR +P+L F  D SL+    +   +   + PVA
Sbjct: 81  AQRTRHQLRKMPDLSFYVDDSLEYIDGIEKSIKGKEDPVA 120


>gi|71901437|ref|ZP_00683527.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
 gi|71728808|gb|EAO30949.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
          Length = 125

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +S+S+V ++ D+  A V+++          ++ L    + +R ++ +++R LR+VPEL F
Sbjct: 36  MSVSDVEVTRDMAHAKVFVTALQAERSFEAVAGLKALARELRMQLAQTMR-LRFVPELHF 94

Query: 102 RYDTSLQSYWKLNALM 117
            YD SL    ++N L+
Sbjct: 95  HYDDSLDRGERINTLL 110


>gi|290969151|ref|ZP_06560676.1| ribosome-binding factor A [Megasphaera genomosp. type_1 str. 28L]
 gi|290780657|gb|EFD93260.1| ribosome-binding factor A [Megasphaera genomosp. type_1 str. 28L]
          Length = 115

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           +++++  ++ DLR ATVY+SL       R  +  L  +  + R  +G+ L  +RY P + 
Sbjct: 33  VTVTDAKITGDLREATVYVSLYGSPEEKRATLQVLRQSAGYFRTAVGKRL-GIRYAPSIT 91

Query: 101 FRYDTSLQSYWKLNALM 117
           F  DTSL    K++ L+
Sbjct: 92  FAEDTSLDYGMKIDRLL 108


>gi|78778501|ref|YP_396613.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9312]
 gi|123554790|sp|Q31D68|RBFA_PROM9 RecName: Full=Ribosome-binding factor A
 gi|78712000|gb|ABB49177.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9312]
          Length = 130

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 24  MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNIKFI 82
           + +IL N+ ++ LI    ++IS++ +S DL+   +YI S   +     +++ LN    FI
Sbjct: 18  ITLILQNDLENDLIRDYFVNISKIDLSGDLQHCKIYITSTAKETVRKEIVANLNTAKSFI 77

Query: 83  RGRIGRSLRNLRYVPELRFRYDTSL 107
           R  +G+ +  +R VPE+ F+ D  L
Sbjct: 78  RNNLGKRIE-MRRVPEIIFKEDIVL 101


>gi|301063527|ref|ZP_07204059.1| ribosome-binding factor A [delta proteobacterium NaphS2]
 gi|300442466|gb|EFK06699.1| ribosome-binding factor A [delta proteobacterium NaphS2]
          Length = 116

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 59/104 (56%), Gaps = 9/104 (8%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
            +R+ RVG+ +   +  ++L      R+     ++++ + +S DL++A +Y S+  D + 
Sbjct: 4   GKRSARVGDVILKEVALLLLEKVRDPRVQG---VTLTGIRLSDDLKLARIYYSVMGDET- 59

Query: 69  DRVI---SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
            R++   S L+    F++  IGR   +LRY+P++ F YD SL++
Sbjct: 60  -RILKAQSGLDSAKGFVKREIGRRA-SLRYIPDITFVYDPSLET 101


>gi|332295454|ref|YP_004437377.1| Ribosome-binding factor A [Thermodesulfobium narugense DSM 14796]
 gi|332178557|gb|AEE14246.1| Ribosome-binding factor A [Thermodesulfobium narugense DSM 14796]
          Length = 112

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 5/101 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
           S +A R+ E +R  L   +L  E +D  I + ++SI E+ MS D +   V++S+  D  S
Sbjct: 2   SVKAERLKETIRKEL--AVLLYELKDVRI-KSMVSIMELDMSSDHKNIKVWVSIYGDEKS 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            +  +  L    +F+RG + R +  L+Y P++ F  D SL+
Sbjct: 59  KEETMKGLVSASRFLRGELARRI-GLKYAPQILFAIDNSLE 98


>gi|56379642|dbj|BAD75550.1| ribosome-binding factor A [Geobacillus kaustophilus HTA426]
          Length = 112

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 42  ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           +++++V ++ DL+ A VYIS L  D   +  + AL     FIR  IG+ +R LR  PE+ 
Sbjct: 17  VTVTDVRVTGDLQQAKVYISVLGDDKQRENTLKALEKAKGFIRSEIGQRIR-LRKTPEIF 75

Query: 101 FRYDTSLQSYWKLNALM 117
           F  D +++   ++  L+
Sbjct: 76  FEIDETMEYGSRIEQLI 92


>gi|29427588|sp|P59411|RBFA_BUCBP RecName: Full=Ribosome-binding factor A
          Length = 119

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
           R+ ++  E++  + W+I       RL +  +IS+S V +S D   A +Y+S+    ++S 
Sbjct: 6   RSFKISNEIKKKISWIICYQLCDPRLFN-ILISVSSVNLSRDFSYAKIYVSILNNKNISF 64

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +++ L  + K IR  + + +  LR +P L F +D+S  +  K+  L+
Sbjct: 65  KEILTILQNSSKHIRYLLAKGIF-LRIIPTLHFCHDSSYVNGTKITNLI 112


>gi|24418643|sp|Q8P7U8|RBFA_XANCP RecName: Full=Ribosome-binding factor A
 gi|172046801|sp|Q4UWA1|RBFA_XANC8 RecName: Full=Ribosome-binding factor A
 gi|189039669|sp|B0RRB5|RBFA_XANCB RecName: Full=Ribosome-binding factor A
          Length = 130

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R  RV  +VR  L   I++   +D  +    +S+S+V +S DL  A V+++     
Sbjct: 4   KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                +  L      +R ++ R+++ LR+VPEL F YD S+    +++ L+
Sbjct: 61  RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110


>gi|194366587|ref|YP_002029197.1| ribosome-binding factor A [Stenotrophomonas maltophilia R551-3]
 gi|259552073|sp|B4SQR9|RBFA_STRM5 RecName: Full=Ribosome-binding factor A
 gi|194349391|gb|ACF52514.1| ribosome-binding factor A [Stenotrophomonas maltophilia R551-3]
          Length = 127

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           PK   R  RV  ++R  L  ++ N   +  L S   +S+S+V ++ D+  A V+++  + 
Sbjct: 2   PKTFHRTDRVSAQLRRELGTLVHNAVREHGLPS---VSVSDVEITRDMAHAKVFVTALMP 58

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL-NALMCLPKIPV 124
                 ++ L      +R  + R+++ LR+VPEL F YD S+     + N L  LP   +
Sbjct: 59  ERSAEAVAGLKELGYRLRMDLARAMK-LRHVPELHFHYDDSVDRGEHIDNILRDLPDT-L 116

Query: 125 ALEK 128
           A EK
Sbjct: 117 AAEK 120


>gi|330888657|gb|EGH21318.1| ribosome-binding factor A [Pseudomonas syringae pv. mori str.
           301020]
          Length = 131

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 7/107 (6%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-- 71
           R+G++++  L  +I   E +D  +   +++I  V +S D+  A +++++    S + +  
Sbjct: 3   RIGDQMQRELAQLI-RREIKDPRVG--LVTIPAVDVSRDVGHAKIFMTVMGQDSAEEIAQ 59

Query: 72  -ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            I  LN    F+R ++ R ++ LR VP+L F YD S+     L+AL+
Sbjct: 60  TIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 105


>gi|21231943|ref|NP_637860.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767930|ref|YP_242692.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991046|ref|YP_001903056.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113672|gb|AAM41784.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573262|gb|AAY48672.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732806|emb|CAP51000.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris]
          Length = 132

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R  RV  +VR  L   I++   +D  +    +S+S+V +S DL  A V+++     
Sbjct: 6   KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 62

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                +  L      +R ++ R+++ LR+VPEL F YD S+    +++ L+
Sbjct: 63  RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 112


>gi|330718228|ref|ZP_08312828.1| ribosome-binding factor A [Leuconostoc fallax KCTC 3537]
          Length = 117

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           N +RA R+ +E++  +  ++L      R+  +DV +I+ V ++ DL+ AT+Y S+  D++
Sbjct: 3   NPQRAGRLSQEIQRDVTDLLLKRVRDPRV--QDV-TITSVDVTGDLQGATIYYSILSDLA 59

Query: 68  PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            D  +    L      IR  +G  L  +  +PEL+F  DTS+Q
Sbjct: 60  SDAKKAQDGLEAATGLIRKELGSRL-TVYKIPELKFVRDTSVQ 101


>gi|227510257|ref|ZP_03940306.1| ribosome-binding factor A [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227524401|ref|ZP_03954450.1| ribosome-binding factor A [Lactobacillus hilgardii ATCC 8290]
 gi|227088632|gb|EEI23944.1| ribosome-binding factor A [Lactobacillus hilgardii ATCC 8290]
 gi|227189909|gb|EEI69976.1| ribosome-binding factor A [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 116

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++++ V ++ DL+ AT+Y S+  D   D   +A  L      IRG +G  L ++   PE+
Sbjct: 33  VTLTGVEVTGDLQQATIYYSILSDDKADEETTAKGLEKATGLIRGELGSRL-SIYKTPEI 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  DTS+Q   K++ L+
Sbjct: 92  KFELDTSVQYGDKIDRLI 109


>gi|86135202|ref|ZP_01053784.1| Ribosome-binding factor A [Polaribacter sp. MED152]
 gi|85822065|gb|EAQ43212.1| Ribosome-binding factor A [Polaribacter sp. MED152]
          Length = 131

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S+V ++ DL VA VY+S+      D ++  +  N   IR  + +  +N LR +PEL
Sbjct: 34  IISVSKVHVTSDLGVAKVYLSVFPSEKRDELVKGVQSNTVLIRHEMAKRTKNQLRRMPEL 93

Query: 100 RFRYDTSL 107
            F  D +L
Sbjct: 94  LFFGDDTL 101


>gi|297180706|gb|ADI16915.1| ribosome-binding factor a [uncultured gamma proteobacterium
           HF0010_16J05]
          Length = 124

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
           R LRV + +R  +   IL ++ +D  +    +S+S+V +S DL  A +Y+S  LD     
Sbjct: 3   RDLRVADFIRDEIAR-ILQSQMRDPRVGA-FVSVSDVRVSKDLSYAEIYVS-SLDAKTAE 59

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              +++  LN    F R  + +    +R  P+ RF YD  L+S  +L  L+ 
Sbjct: 60  QKQQLLEVLNSAAGFFRSELAKR-HKMRTTPKPRFHYDELLESGPRLEKLIS 110


>gi|148284848|ref|YP_001248938.1| ribosome-binding factor A [Orientia tsutsugamushi str. Boryong]
 gi|146740287|emb|CAM80662.1| Ribosome-binding factor A [Orientia tsutsugamushi str. Boryong]
          Length = 120

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK      S + LR    +R AL+ V+ +N+    L     I++++V       +   YI
Sbjct: 1   MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECK-ITVTKVLAQAGQGMYHCYI 59

Query: 61  SLPLD---VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
            LP     +S D+++ A+N ++  IR  I + + NL+Y PELR  YD
Sbjct: 60  -LPFSNSKLSQDKLMHAINDSLPIIRRMITQKI-NLKYSPELRIFYD 104


>gi|158320561|ref|YP_001513068.1| ribosome-binding factor A [Alkaliphilus oremlandii OhILAs]
 gi|166918672|sp|A8MFA9|RBFA_ALKOO RecName: Full=Ribosome-binding factor A
 gi|158140760|gb|ABW19072.1| ribosome-binding factor A [Alkaliphilus oremlandii OhILAs]
          Length = 132

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  R+ EE++  +   I  NE +D  IS  + SI EV ++ DLR   +Y+S L  +    
Sbjct: 5   RVKRLSEEIKKIVSDSI-RNELRDPRISS-MTSIVEVDVTRDLRYVNIYVSVLGNEKEKA 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
             +  L     FIR  IG+ ++  RY PE+ F+ D S++
Sbjct: 63  DTMEGLTKASGFIRREIGKKIK-ARYTPEVIFKLDESIE 100


>gi|302039402|ref|YP_003799724.1| ribosome-binding factor A [Candidatus Nitrospira defluvii]
 gi|300607466|emb|CBK43799.1| Ribosome-binding factor A [Candidatus Nitrospira defluvii]
          Length = 132

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           RA RV +++R  +  +++      R+ S   +++++V ++ DLR+A V+++       +R
Sbjct: 8   RADRVADQIRMEVADILMRKIKDPRVRS---VTVTDVELTKDLRIARVFVTTMEQNKDER 64

Query: 71  -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
            V   L     F+R  +GR L  LRY+PEL F  D S
Sbjct: 65  LVFDGLAKASGFVRAELGRRL-ALRYLPELIFMKDIS 100


>gi|242278475|ref|YP_002990604.1| ribosome-binding factor A [Desulfovibrio salexigens DSM 2638]
 gi|242121369|gb|ACS79065.1| ribosome-binding factor A [Desulfovibrio salexigens DSM 2638]
          Length = 117

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
            SRR++++G+++   +  +++      RL   +++SIS V M+ D ++A V  ++  D  
Sbjct: 5   TSRRSVKMGDQIMREIATMLIEEIGDPRL---EMVSISGVRMNKDNKIAEVMFTMAGDKE 61

Query: 68  P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
                + AL+    ++R ++ + +R +R +PELRF +D  L+
Sbjct: 62  KIAAAVKALDKAKGYMRSKLSKRIR-VRQIPELRFVHDNFLE 102


>gi|167766531|ref|ZP_02438584.1| hypothetical protein CLOSS21_01037 [Clostridium sp. SS2/1]
 gi|317498931|ref|ZP_07957214.1| ribosome-binding factor A [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711654|gb|EDS22233.1| hypothetical protein CLOSS21_01037 [Clostridium sp. SS2/1]
 gi|291558570|emb|CBL37370.1| ribosome-binding factor A [butyrate-producing bacterium SSC/2]
 gi|316893764|gb|EFV15963.1| ribosome-binding factor A [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 123

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+  EV+  L  +I + E +D  I+  + S+ +  ++ DL+    YIS L  D
Sbjct: 3   KNSIKNTRINGEVQRELSRII-SREIKDPRIA-PMTSVVDAVVTSDLKQCKAYISVLGND 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              +  +  LN  + +IR  +  S+ NLR  PE+ F  D S++
Sbjct: 61  EEKEETMKGLNSAVGYIRRELAHSI-NLRNTPEITFILDDSIE 102


>gi|116748670|ref|YP_845357.1| ribosome-binding factor A [Syntrophobacter fumaroxidans MPOB]
 gi|171460794|sp|A0LHM0|RBFA_SYNFM RecName: Full=Ribosome-binding factor A
 gi|116697734|gb|ABK16922.1| ribosome-binding factor A [Syntrophobacter fumaroxidans MPOB]
          Length = 117

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 7/111 (6%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           +RA RV + +R  +  ++L    +D  +S+  ++I+ + ++ DL+ A V+  L    + +
Sbjct: 4   KRADRVADLLRREMADLLLRR-IKDPRVSK--VTITAIEVTDDLQNAKVFFCLMGAATEE 60

Query: 70  RVISA---LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              SA   LN    F+R  +G+ L +LRY+P+L F YD+S +   K+  L+
Sbjct: 61  EKRSAALGLNRGKGFMRLELGKRL-HLRYLPQLSFHYDSSFEYGDKIERLL 110


>gi|323701867|ref|ZP_08113537.1| ribosome-binding factor A [Desulfotomaculum nigrificans DSM 574]
 gi|323533171|gb|EGB23040.1| ribosome-binding factor A [Desulfotomaculum nigrificans DSM 574]
          Length = 120

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           S R  R+ E ++  +  +I   E +D  +    ++I+ V ++ DL  A +++S +  D  
Sbjct: 2   SHRPERLAEAIKKEIADLI-RTEIKDPRVG--FVTITGVEVTRDLSYAKIFVSVMGSDDQ 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               ++ L     ++R  +GR ++ +R+VPEL F+ DTSL    ++  L+
Sbjct: 59  RKETMAVLQKAAGYMRSEVGRRIK-VRHVPELMFKLDTSLDHGTRIMELL 107


>gi|15836841|ref|NP_297529.1| ribosome-binding factor A [Xylella fastidiosa 9a5c]
 gi|20978662|sp|Q9PGR2|RBFA_XYLFA RecName: Full=Ribosome-binding factor A
 gi|9105047|gb|AAF83049.1|AE003877_4 ribosomal-binding factor A [Xylella fastidiosa 9a5c]
          Length = 125

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +S+S+V ++ D+  A V+++          ++ L    + +R ++  ++R LR+VPEL F
Sbjct: 36  MSVSDVEVTRDMAHAKVFVTALQAERSFEAVAGLKALARELRMQLAHTMR-LRFVPELHF 94

Query: 102 RYDTSLQSYWKLNALM 117
            YD SL    ++N L+
Sbjct: 95  HYDDSLDRGERINTLL 110


>gi|255658257|ref|ZP_05403666.1| ribosome-binding factor A [Mitsuokella multacida DSM 20544]
 gi|260849568|gb|EEX69575.1| ribosome-binding factor A [Mitsuokella multacida DSM 20544]
          Length = 131

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 11/111 (9%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  +V E ++  +  +IL  E +D  I    ++++ V  + DLR A +Y+SL   +  ++
Sbjct: 5   RVEKVQELMKQEISEIILR-ELKDPRIG--FVTVTSVECTGDLREAKIYVSL---MGSEQ 58

Query: 71  VI----SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +    + L  ++ FIR  IG+ +R LR+ PEL F  D SL     +  L+
Sbjct: 59  QVKDCWAGLQSSLGFIRREIGKRIR-LRFTPELSFVVDKSLDYSAHIQELL 108


>gi|27904829|ref|NP_777955.1| ribosome-binding factor A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|27904227|gb|AAO27060.1| ribosome-binding factor A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 124

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
           R+ ++  E++  + W+I       RL +  +IS+S V +S D   A +Y+S+    ++S 
Sbjct: 11  RSFKISNEIKKKISWIICYQLCDPRLFN-ILISVSSVNLSRDFSYAKIYVSILNNKNISF 69

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +++ L  + K IR  + + +  LR +P L F +D+S  +  K+  L+
Sbjct: 70  KEILTILQNSSKHIRYLLAKGIF-LRIIPTLHFCHDSSYVNGTKITNLI 117


>gi|78048392|ref|YP_364567.1| ribosome-binding factor A [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|294624707|ref|ZP_06703374.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665174|ref|ZP_06730474.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325924692|ref|ZP_08186130.1| ribosome-binding factor A [Xanthomonas perforans 91-118]
 gi|123584681|sp|Q3BRP6|RBFA_XANC5 RecName: Full=Ribosome-binding factor A
 gi|78036822|emb|CAJ24515.1| ribosomal-binding factor A [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|292600980|gb|EFF45050.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605038|gb|EFF48389.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325544898|gb|EGD16243.1| ribosome-binding factor A [Xanthomonas perforans 91-118]
          Length = 130

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R  RV  +VR  L   I++   +D  +    +S+S+V +S DL  A V+++     
Sbjct: 4   KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                +  L      +R ++ R+++ LR+VPEL F YD S+    +++ L+
Sbjct: 61  RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110


>gi|190575261|ref|YP_001973106.1| ribosome-binding factor A [Stenotrophomonas maltophilia K279a]
 gi|254521412|ref|ZP_05133467.1| ribosome-binding factor A [Stenotrophomonas sp. SKA14]
 gi|259552102|sp|B2FN89|RBFA_STRMK RecName: Full=Ribosome-binding factor A
 gi|190013183|emb|CAQ46816.1| putative ribosome-binding factor A [Stenotrophomonas maltophilia
           K279a]
 gi|219719003|gb|EED37528.1| ribosome-binding factor A [Stenotrophomonas sp. SKA14]
          Length = 127

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           PK   R  RV  ++R  L  ++ N   +  L S   +S+S+V ++ D+  A V+++  + 
Sbjct: 2   PKTFHRTDRVSAQLRRELGTLVHNAVREHGLPS---VSVSDVEITRDMAHAKVFVTALMP 58

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL-NALMCLPKIPV 124
                 ++ L      +R  + R+++ LR+VPEL F YD S+     + N L  LP   +
Sbjct: 59  ERSAEAVAGLKELGYRLRMDLARAMK-LRHVPELHFHYDDSVDRGEHIDNILRDLPDT-L 116

Query: 125 ALEK 128
           A EK
Sbjct: 117 AAEK 120


>gi|189501698|ref|YP_001957415.1| hypothetical protein Aasi_0243 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497139|gb|ACE05686.1| hypothetical protein Aasi_0243 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 125

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +++++ + +    RV  VY+S     +  R+I  L  +   IRG +G+ L N LR +PEL
Sbjct: 34  LVTVTSLYICDKTRVVKVYVSFMPSQNGPRMIKELEKHKSKIRGLLGKRLANKLRSIPEL 93

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D S++  + +  L+
Sbjct: 94  KFHLDNSIERAYHIEKLL 111


>gi|284052769|ref|ZP_06382979.1| ribosome-binding factor A [Arthrospira platensis str. Paraca]
 gi|291565861|dbj|BAI88133.1| ribosome-binding factor A [Arthrospira platensis NIES-39]
          Length = 137

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 3/109 (2%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
           RR  RV   ++  +  V+L +   DR +   ++SI+EV +S DL+ A +++S+       
Sbjct: 5   RRVSRVASLIKREVSQVLLYDIKDDR-VGTGMVSITEVEVSGDLQHAKIFVSIYGTEEAR 63

Query: 70  R-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           R  +  L     +IR  +G+ +R LR  PE+ F  D SL+   K+  L+
Sbjct: 64  RSTMEGLRSATGYIRSHLGKHIR-LRRTPEVVFLEDRSLERGDKIIDLL 111


>gi|33866739|ref|NP_898298.1| ribosome-binding factor A [Synechococcus sp. WH 8102]
 gi|39931754|sp|Q7TTS8|RBFA_SYNPX RecName: Full=Ribosome-binding factor A
 gi|33639340|emb|CAE08722.1| possible Ribosome-binding factor A [Synechococcus sp. WH 8102]
          Length = 134

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
             RR  RV   +R     +++N   +D  + + ++SI+ V +S DL+   +++S+  D  
Sbjct: 3   QGRRVERVAALIRKETSELLING-IRDERVHQGMVSITNVEVSGDLQHCKIFVSIFGDEA 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S  +V+  L     +++G +GR L+ +R  P++ F+ D  ++    +  L+
Sbjct: 62  SQLQVMEGLQAASGYLKGELGRRLQ-MRRAPDVVFQLDRGIERGTSVLGLL 111


>gi|269792601|ref|YP_003317505.1| ribosome-binding factor A [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100236|gb|ACZ19223.1| ribosome-binding factor A [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 137

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 44  ISEVCMSVDLRVATVYISLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
           ++ V  S DL VA VY ++ LD S  + V   L      IRG +GR +R LR +PE RF 
Sbjct: 35  LTGVSCSKDLSVAKVYFTV-LDRSKVEEVRLGLEGASGLIRGMLGREMR-LRKIPEFRFI 92

Query: 103 YDTSLQSYWKLNALM 117
           YD +     +++A++
Sbjct: 93  YDDTEDRAGRVDAIL 107


>gi|169831090|ref|YP_001717072.1| ribosome-binding factor A [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637934|gb|ACA59440.1| ribosome-binding factor A [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 119

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 42  ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           ++++ V +S DLR A V++S L  +   D  +  L     FIR  +G+ +R LRY PE+ 
Sbjct: 34  VTVTAVEVSSDLRYAKVFVSVLGSNEDQDASLKVLRGAQGFIRTELGKRIR-LRYTPEVS 92

Query: 101 FRYDTSLQSYWKL 113
           F +D S++   ++
Sbjct: 93  FVHDPSIEEGTRI 105


>gi|108757332|ref|YP_630299.1| ribosome-binding factor A [Myxococcus xanthus DK 1622]
 gi|122389557|sp|Q1DAM4|RBFA_MYXXD RecName: Full=Ribosome-binding factor A
 gi|108461212|gb|ABF86397.1| ribosome-binding factor A [Myxococcus xanthus DK 1622]
          Length = 119

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RVG+E+++A+  ++     +D  I    I+I+ V +S DLRVA V+ S+ +    +R
Sbjct: 6   RPERVGQEIQAAIGDLLTRGMLRDPRIG--YITITGVKVSPDLRVARVFYSM-MGNEQER 62

Query: 71  VIS--ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +   L     F+R  +  ++ NLR  PE+ F +D S+    K++ L+
Sbjct: 63  ADTQKGLEAAKGFVRREVTSAV-NLRVSPEIFFSFDESVGEGDKIDRLL 110


>gi|291279904|ref|YP_003496739.1| ribosome-binding factor A [Deferribacter desulfuricans SSM1]
 gi|290754606|dbj|BAI80983.1| ribosome-binding factor A [Deferribacter desulfuricans SSM1]
          Length = 115

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPD 69
           RA RV E +R  L  +I+  E +D L+    + I+ V +S DL +A +Y  S  L++  +
Sbjct: 6   RARRVSELIREELSKLIIY-EVKDPLVKS--VIITAVKVSNDLSLAKIYFRSYDLEMDLN 62

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            V+  LN +  F+R  I +SLR L+ +P L F  D  +    K++ ++
Sbjct: 63  DVLKGLNRSKGFLRENIKKSLR-LKKIPSLEFYIDDVVDEGLKIDNII 109


>gi|15834989|ref|NP_296748.1| ribosome-binding factor A [Chlamydia muridarum Nigg]
 gi|13431817|sp|Q9PKU1|RBFA_CHLMU RecName: Full=Ribosome-binding factor A
 gi|8163212|gb|AAF73551.1| ribosome-binding factor A [Chlamydia muridarum Nigg]
          Length = 133

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
           +RR  +V   +R ++  VIL  + +   IS   I+I+ V +S DL+ A VY+S +P + S
Sbjct: 4   NRRMKKVNAMLRESIAKVILK-DVKHPKISNRWITITRVSLSRDLQSARVYVSIMPHENS 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
            +  ++AL  +  FI  +  + +  L+Y P+L F
Sbjct: 63  QEETLAALKASAGFIACQASKDVV-LKYFPDLNF 95


>gi|319952940|ref|YP_004164207.1| ribosome-binding factor a [Cellulophaga algicola DSM 14237]
 gi|319421600|gb|ADV48709.1| ribosome-binding factor A [Cellulophaga algicola DSM 14237]
          Length = 130

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
            ++R  ++G  ++  +  V L     D  +   +IS+S+V ++ DL +A VY+S+     
Sbjct: 2   ETQRQKKIGGVIQKDIADV-LQRAATDGGLRGTLISVSKVIVTTDLSIAKVYVSIFPTKD 60

Query: 68  PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQ 108
              ++  +  N   I+  + +  +N LR +PEL F  D SL+
Sbjct: 61  AQELLKGMKSNQPLIKHELAQRTKNQLRRMPELMFFLDDSLE 102


>gi|124007683|ref|ZP_01692386.1| ribosome-binding factor A [Microscilla marina ATCC 23134]
 gi|123986805|gb|EAY26577.1| ribosome-binding factor A [Microscilla marina ATCC 23134]
          Length = 128

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELR 100
           ++I+ V ++ DL +A VY+S+        V+     N K IR  + R ++N +R +PELR
Sbjct: 34  VTITNVKVTPDLGIAYVYLSILAASDKQAVVDIAEDNNKMIRQVLARKIKNQVRAIPELR 93

Query: 101 FRYDTSLQSYWKLNALMCLPKIP 123
           F  D +     K++ L     IP
Sbjct: 94  FFLDDTSDYVQKMDELFDNLDIP 116


>gi|217970110|ref|YP_002355344.1| ribosome-binding factor A [Thauera sp. MZ1T]
 gi|217507437|gb|ACK54448.1| ribosome-binding factor A [Thauera sp. MZ1T]
          Length = 141

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 13/117 (11%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRD----VISISEVCMSVDLRVATVYIS 61
           PK   R+ RV E++R  L  +I       RL  +D     I++++V ++ D   A V+ +
Sbjct: 2   PKEYSRSQRVVEQIRRELAELI-------RLEVKDPRVGFITLTDVEITPDYAHAKVFFT 54

Query: 62  -LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +  +     ++  L     F+R  +GR +R +  +PEL F YD S++   +L+ L+
Sbjct: 55  NMTGEADVPEILQGLRRASGFLRRELGRRIR-IHTIPELHFHYDRSVEEGSRLSQLI 110


>gi|114566434|ref|YP_753588.1| hypothetical protein Swol_0901 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318494|sp|Q0AYI7|RBFA_SYNWW RecName: Full=Ribosome-binding factor A
 gi|114337369|gb|ABI68217.1| ribosome-binding factor A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 122

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
           + RR  R+  E+   L  +I   E +D  I    +SI+ + +S D   A V IS+  D +
Sbjct: 2   SKRRQERMSVEIMRVLSQII-QEEIKDPRIEFKNLSITRIDLSNDYSHARVNISILGDEI 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  + AL     +IR  + + L+ +R+ PEL FR D S++   ++++L+
Sbjct: 61  QREEAMKALQKAKGYIRSALAQQLK-VRHAPELEFRLDRSIEHGIRISSLL 110


>gi|325915556|ref|ZP_08177867.1| ribosome-binding factor A [Xanthomonas vesicatoria ATCC 35937]
 gi|325538272|gb|EGD09957.1| ribosome-binding factor A [Xanthomonas vesicatoria ATCC 35937]
          Length = 130

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R  RV  +VR  L   I++   +D  +    +S+S+V +S DL  A V+++     
Sbjct: 4   KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLP--SVSVSDVEISRDLAHAKVFVTALQQE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                +  L      +R ++ R+++ LR+VPEL F YD S+    +++ L+
Sbjct: 61  RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110


>gi|307825111|ref|ZP_07655332.1| ribosome-binding factor A [Methylobacter tundripaludum SV96]
 gi|307733859|gb|EFO04715.1| ribosome-binding factor A [Methylobacter tundripaludum SV96]
          Length = 120

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 6/110 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
           R  RV  +++  L  V+  +    RL     I+I+EV ++ DL VA VY++ L +D    
Sbjct: 7   RNARVSSQMQKELSLVLQRDIDDSRL---GFITINEVVVTKDLAVAKVYVTVLNVDEQGK 63

Query: 70  RV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +  +  LN     IR ++ + +R LR++ +LRF YD S  +  +++ L+ 
Sbjct: 64  KANVKLLNEMSPVIRHQLAKRMR-LRHISDLRFYYDDSFDTGMRVSELLS 112


>gi|269123539|ref|YP_003306116.1| ribosome-binding factor A [Streptobacillus moniliformis DSM 12112]
 gi|268314865|gb|ACZ01239.1| ribosome-binding factor A [Streptobacillus moniliformis DSM 12112]
          Length = 124

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 39  RDVISISEVCMSVDLRVATVYISL---PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRY 95
           R+++++  V +S D R A V +S+     +++ ++++  LN    F R ++G +L  +RY
Sbjct: 31  RNLVTVKSVNLSPDARYADVIMSILDYKQNINKEKLLEELNKLKGFFRKKVGENLE-IRY 89

Query: 96  VPELRFRYDTSLQSYWKLNALM 117
            PE+R   D S++   K++ ++
Sbjct: 90  TPEIRIHLDDSVEYSVKISKIL 111


>gi|58582840|ref|YP_201856.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624707|ref|YP_452079.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|62510970|sp|Q5GXV0|RBFA_XANOR RecName: Full=Ribosome-binding factor A
 gi|123521403|sp|Q2P0X2|RBFA_XANOM RecName: Full=Ribosome-binding factor A
 gi|58427434|gb|AAW76471.1| ribosomal-binding factor A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368647|dbj|BAE69805.1| ribosomal-binding factor A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 130

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R  RV  +VR  L   I++   +D  +    +S+S+V +S DL  A V+++     
Sbjct: 4   KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                +  L      +R ++ R+++ LR+VPEL F YD S+    +++ L+
Sbjct: 61  RSAEAVKGLKDIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110


>gi|24372788|ref|NP_716830.1| ribosome-binding factor A [Shewanella oneidensis MR-1]
 gi|29427753|sp|Q8EHL4|RBFA_SHEON RecName: Full=Ribosome-binding factor A
 gi|24346873|gb|AAN54275.1|AE015564_6 ribosome-binding factor A [Shewanella oneidensis MR-1]
          Length = 147

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  R+G++++  L  V+L  + +D  I    +++++V +S DL  A V+++   +
Sbjct: 2   AKEFSRTRRIGQQLQQEL-AVVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTF-FE 57

Query: 66  VSPDRVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              D V   LN  I    +IR  +   ++ LR +PE+RF YD+SL    +++ L+ 
Sbjct: 58  EDKDVVQEKLNALIAAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVS 112


>gi|21243415|ref|NP_642997.1| ribosome-binding factor A [Xanthomonas axonopodis pv. citri str.
           306]
 gi|24418644|sp|Q8PJ56|RBFA_XANAC RecName: Full=Ribosome-binding factor A
 gi|21108966|gb|AAM37533.1| ribosomal-binding factor A [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 130

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R  RV  +VR  L  ++      + L S   +S+S+V +S DL  A V+++     
Sbjct: 4   KSFHRTDRVSAQVRRDLGTIVHAAVRDNGLPS---VSVSDVEISRDLAHAKVFVTALQQE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                +  L      +R ++ R+++ LR+VPEL F YD S+    +++ L+
Sbjct: 61  RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110


>gi|166712597|ref|ZP_02243804.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 130

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R  RV  +VR  L   I++   +D  +    +S+S+V +S DL  A V+++     
Sbjct: 4   KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLP--SVSVSDVEISRDLAHAKVFVTALQQE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                +  L      +R ++ R+++ LR+VPEL F YD S+    +++ L+
Sbjct: 61  RSAEAVKGLKDIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110


>gi|213962361|ref|ZP_03390624.1| ribosome-binding factor A [Capnocytophaga sputigena Capno]
 gi|213955027|gb|EEB66346.1| ribosome-binding factor A [Capnocytophaga sputigena Capno]
          Length = 130

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGR-SLRNLRYVPEL 99
           ++S+++V ++VDL VA VY+S+  +     V+  +  N   I+  + + +    R +PEL
Sbjct: 34  LVSVTKVNVTVDLSVAKVYLSVFPEAKAAEVLKGVTSNAPLIKHELSQITKHQFRRMPEL 93

Query: 100 RFRYDTSLQ 108
            F  D SLQ
Sbjct: 94  FFYIDDSLQ 102


>gi|294085146|ref|YP_003551906.1| ribosome-binding factor A [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664721|gb|ADE39822.1| ribosome-binding factor A [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 129

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 3/110 (2%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
           S+R LRVGE +R AL  ++   +F D  +    I+ISE+ +S DL  A VY ++PL  V+
Sbjct: 15  SQRQLRVGETLRHALSDILFREDFFDPDLENVSITISEISISPDLSNARVY-TMPLGGVN 73

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + V+ ALN     I+  + + + +LR  P L+F  D S ++  ++N L 
Sbjct: 74  VEVVLPALNRLAPKIQSMVAQRV-HLRRAPRLKFLLDESFENAARMNVLF 122


>gi|168062353|ref|XP_001783145.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665343|gb|EDQ52031.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 140

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 43  SISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +I++V +S DL+VA V++SL  D     V +  L    K++R  +G+ + +LR  P++RF
Sbjct: 52  TITDVEISNDLQVAKVFVSLYGDEREQEVALEGLKSKAKYVRMGLGKRM-SLRMTPDVRF 110

Query: 102 RYDTSLQ 108
             D SL+
Sbjct: 111 VKDESLE 117


>gi|158336219|ref|YP_001517393.1| ribosome-binding factor A [Acaryochloris marina MBIC11017]
 gi|189039525|sp|B0CDK8|RBFA_ACAM1 RecName: Full=Ribosome-binding factor A
 gi|158306460|gb|ABW28077.1| ribosome-binding factor A [Acaryochloris marina MBIC11017]
          Length = 138

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
             RR  RV E ++  +  ++L++   DR+ S  +IS++ V +S DL+ A +++S+   D 
Sbjct: 3   TGRRVSRVAELIKREVSQMLLHSIKDDRVGS-GMISVTAVDLSGDLQHAKIFVSIYGTDE 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +    ++ L     ++R ++G  + +LR  PE+ F  D S +   ++ +L+
Sbjct: 62  ARAETMAGLESATGYVRKQLGHRI-HLRRTPEVIFCEDRSFEEGNQVLSLL 111


>gi|289665192|ref|ZP_06486773.1| ribosome-binding factor A [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667362|ref|ZP_06488437.1| ribosome-binding factor A [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 130

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R  RV  +VR  L   I++   +D  +    +S+S+V +S DL  A V+++     
Sbjct: 4   KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                +  L      +R ++ R+++ LR+VPEL F YD S+    +++ L+
Sbjct: 61  RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110


>gi|172057845|ref|YP_001814305.1| ribosome-binding factor A [Exiguobacterium sibiricum 255-15]
 gi|171990366|gb|ACB61288.1| ribosome-binding factor A [Exiguobacterium sibiricum 255-15]
          Length = 113

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
           S R+ RV E+VR  +  +++ +    R+     ++++ V ++ DL+ AT++ S+  D + 
Sbjct: 2   SVRSNRVAEQVRKEITQMLIKDVNDPRV---KAVTVTGVEVTGDLQQATIFYSVLGDETV 58

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +     L  +  F+R  IG  +R LR  PEL F  DTS++   +++ L+
Sbjct: 59  REEARVGLEKSKGFMRKEIGSRIR-LRKTPELLFEIDTSVEYGSRIDELL 107


>gi|332879858|ref|ZP_08447547.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682235|gb|EGJ55143.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 130

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGR-SLRNLRYVPEL 99
           ++S+++V +++DL VA VY+S+  +     V+  +  N   I+  + + +    R +PEL
Sbjct: 34  LVSVTKVTVTIDLSVAKVYLSVFPEAKAAEVLKGVTSNSPLIKHELSQITKHQFRRMPEL 93

Query: 100 RFRYDTSLQ 108
            F  D SLQ
Sbjct: 94  LFYIDDSLQ 102


>gi|170017450|ref|YP_001728369.1| ribosome-binding factor A [Leuconostoc citreum KM20]
 gi|238688972|sp|B1MZH3|RBFA_LEUCK RecName: Full=Ribosome-binding factor A
 gi|169804307|gb|ACA82925.1| Ribosome-binding factor A [Leuconostoc citreum KM20]
          Length = 117

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           N +RA R+ +EV+  +  ++L      R+  +DV +++ V +S DL++AT+Y S+  D++
Sbjct: 3   NPQRAGRLAQEVQRDVTDLLLKRINDPRV--QDV-TVTSVELSGDLQIATIYYSILSDLA 59

Query: 68  PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            D  +  + L      IR  +G  L  +   PEL+F  D S+Q
Sbjct: 60  SDGQKAQAGLEAASGLIRKELGARL-TVYKTPELKFVRDQSVQ 101


>gi|34496918|ref|NP_901133.1| ribosome-binding factor A [Chromobacterium violaceum ATCC 12472]
 gi|39931751|sp|Q7NY12|RBFA_CHRVO RecName: Full=Ribosome-binding factor A
 gi|34330314|gb|AAQ59138.2| ribosome-binding factor A [Chromobacterium violaceum ATCC 12472]
          Length = 138

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           I+I+ V ++ D   A VY ++ +D + +    AL+ +  ++R  +GR+++    +P+L F
Sbjct: 38  ITITAVEVTRDYSHAKVYYTVMVDSTREATQEALDSSAGYLRNELGRAIKMFS-MPQLHF 96

Query: 102 RYDTSLQSYWKLNALM 117
            YD S++    L +L+
Sbjct: 97  VYDDSVERGMHLTSLI 112


>gi|57239196|ref|YP_180332.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579154|ref|YP_197366.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
           Welgevonden]
 gi|15811168|gb|AAL08841.1|AF308672_2 hypothetical ribosome-binding factor A [Ehrlichia ruminantium]
 gi|57161275|emb|CAH58196.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417780|emb|CAI26984.1| Putative Ribosome-binding factor A [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 115

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 64/111 (57%), Gaps = 7/111 (6%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R L+V   +  A+  V++++ +    I   ++++S+V +S D++ ATV++ +  D  P
Sbjct: 7   SFRNLKVASVLSRAISRVLIHDIYS---IGCSIVNVSKVEVSKDVKNATVFVVIS-DDHP 62

Query: 69  DR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D+  ++  LN ++ F+  +   S  +LRYVP+L F+ D    +  ++N L+
Sbjct: 63  DKENLVKELN-DVSFLIRKAIFSYVDLRYVPKLYFKIDYHFDNLVRVNQLL 112


>gi|58617207|ref|YP_196406.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
           Gardel]
 gi|58416819|emb|CAI27932.1| Putative Ribosome-binding factor A [Ehrlichia ruminantium str.
           Gardel]
          Length = 115

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 64/111 (57%), Gaps = 7/111 (6%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S R L+V   +  A+  V++++ +    I   ++++S+V +S D++ ATV++ +  D  P
Sbjct: 7   SFRNLKVASVLSRAISRVLIHDIYS---IGCSIVNVSKVEVSKDVKNATVFVVIS-DDHP 62

Query: 69  DR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D+  ++  LN ++ F+  +   S  +LRYVP+L F+ D    +  ++N L+
Sbjct: 63  DKEDLVKELN-DVSFLIRKAIFSYVDLRYVPKLYFKIDYHFDNLVRVNQLL 112


>gi|163786898|ref|ZP_02181346.1| ribosome-binding factor A [Flavobacteriales bacterium ALC-1]
 gi|159878758|gb|EDP72814.1| ribosome-binding factor A [Flavobacteriales bacterium ALC-1]
          Length = 130

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S+V ++VDL +A VY+S+  +     ++  +  N   IR  + +  R+ LR +P+L
Sbjct: 34  IISVSKVSVTVDLSMAKVYLSIFPNKEAQPLLEGIRSNKPLIRHELSQRTRHQLRRMPQL 93

Query: 100 RFRYDTSLQ 108
            F  D SL+
Sbjct: 94  EFFIDDSLE 102


>gi|323453068|gb|EGB08940.1| hypothetical protein AURANDRAFT_63469 [Aureococcus anophagefferens]
          Length = 248

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEF----QDRLISRDVISIS--EVCMSVDLR 54
           M  +    SRR  RV + VRS L  VI +  F     DR+ +  + S S  +V +S DLR
Sbjct: 38  MAREEVDRSRRQSRVAQLVRSELATVIRDGAFLVKTGDRVDAEVLKSTSVLDVSVSPDLR 97

Query: 55  VATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
            AT  I+   D S  R   S L  N + +R  + + L++ + VP + FR
Sbjct: 98  AATATITTLGDTSAKREAFSWLVKNERSVRYALAKRLKHSKRVPAVTFR 146


>gi|194246710|ref|YP_002004349.1| Ribosome-binding factor A [Candidatus Phytoplasma mali]
 gi|259552045|sp|B3QZW6|RBFA_PHYMT RecName: Full=Ribosome-binding factor A
 gi|193807067|emb|CAP18503.1| Ribosome-binding factor A [Candidatus Phytoplasma mali]
          Length = 114

 Score = 40.8 bits (94), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISA---LNCNIKFIRGRIGRSLRNLRYVPE 98
           I+++EV ++ DL  A VY  + L+  P+ +  A   +  N   IR  + + +RN+R +PE
Sbjct: 32  INVTEVKLTNDLSFANVYYVI-LNNQPEFLSLAAEIIEKNKSTIRMLLAKKIRNIRKIPE 90

Query: 99  LRFRYDTSLQ 108
           L F YDTSL+
Sbjct: 91  LVFIYDTSLE 100


>gi|288940252|ref|YP_003442492.1| ribosome-binding factor A [Allochromatium vinosum DSM 180]
 gi|288895624|gb|ADC61460.1| ribosome-binding factor A [Allochromatium vinosum DSM 180]
          Length = 127

 Score = 40.8 bits (94), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 8/116 (6%)

Query: 5   NPKNSRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-L 62
           N +   R  R+G E++ AL  V++ ++ +D RL +   I++ EV ++ DL  A VY +  
Sbjct: 2   NEREFDRTERIGAEMKRAL-AVLVRDQVKDPRLAN---ITVHEVRVTRDLAHAKVYFTCF 57

Query: 63  PLDVSPDRVISALNCNIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           P D         LN  +  F+R  + + +R LR +P+L F YD S+     L+ L+
Sbjct: 58  PSDEDTPAQERLLNKQLAGFLRHALAQEVR-LRAMPQLHFVYDESIAQGQHLSDLI 112


>gi|163754470|ref|ZP_02161592.1| ribosome-binding factor A [Kordia algicida OT-1]
 gi|161325411|gb|EDP96738.1| ribosome-binding factor A [Kordia algicida OT-1]
          Length = 133

 Score = 40.8 bits (94), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+++V ++VDL VA VY+S+        ++  +  N   I+  + + +++ LR VP L
Sbjct: 37  IISVTKVNVTVDLSVAKVYLSIFPHNKGKELLEGIQSNAPLIKHELAQRVKHQLRKVPSL 96

Query: 100 RFRYDTSLQ 108
            F  D SL+
Sbjct: 97  TFYVDDSLE 105


>gi|332992819|gb|AEF02874.1| ribosome-binding factor A [Alteromonas sp. SN2]
          Length = 133

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
           R  RV ++V   +   IL NE++ R+    +I++S+V ++ DL  A +Y+++    +   
Sbjct: 7   RTDRVSQQVHKEVAS-ILQNEYKHRVGDMPLITVSDVDVTRDLAHAKIYVTIYNSTEEEG 65

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            R I  L     FIR  + + LR +R VP L F  D S+
Sbjct: 66  KRQIKQLAEFQPFIRSILAKRLR-MRSVPHLHFFEDKSI 103


>gi|91792368|ref|YP_562019.1| ribosome-binding factor A [Shewanella denitrificans OS217]
 gi|123061155|sp|Q12QI0|RBFA_SHEDO RecName: Full=Ribosome-binding factor A
 gi|91714370|gb|ABE54296.1| ribosome-binding factor A [Shewanella denitrificans OS217]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLD 65
           K   R  R+ ++++  L  VIL  + +D  I    +++++V +S DL  A V+++    D
Sbjct: 3   KEFSRTRRIAQQLQQEL-AVILQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFYEED 59

Query: 66  VS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           ++  ++ I+AL     ++R  +   ++ LR +PELRF YD+SL    +++ L+ 
Sbjct: 60  LTLVEQKIAALTAAAPYVRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVS 112


>gi|332828398|gb|EGK01107.1| ribosome-binding factor A [Dysgonomonas gadei ATCC BAA-286]
          Length = 117

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
           ++S+S V +S DL +A VY+S+        ++  +  N+K +R  +G+ + + LR +PEL
Sbjct: 32  LVSVSTVRVSPDLGLAKVYLSIFPSEQGKELLDNIKTNVKALRFDLGQKVGKQLRVIPEL 91

Query: 100 RFRYDTSLQSYWKLNALMC 118
            F  D SL     ++ L+ 
Sbjct: 92  SFYLDDSLDYLDNIDKLLG 110


>gi|254424610|ref|ZP_05038328.1| ribosome-binding factor A [Synechococcus sp. PCC 7335]
 gi|196192099|gb|EDX87063.1| ribosome-binding factor A [Synechococcus sp. PCC 7335]
          Length = 114

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGR 85
           +L N+ +D  +   ++SI++V ++ DL+ A +++S+   D +    ++ L     ++R +
Sbjct: 1   MLLNDIKDDRVGAGMVSITDVDVAGDLQHAKIFVSIYGTDEAKAETMAGLKAAEGYVRRQ 60

Query: 86  IGRSLRNLRYVPELRFRYDTSL 107
           +G+ ++ LR  PE+ F+ D S 
Sbjct: 61  LGQRMK-LRRTPEVTFKEDRSF 81


>gi|71280573|ref|YP_268929.1| ribosome-binding factor A [Colwellia psychrerythraea 34H]
 gi|123632666|sp|Q482T8|RBFA_COLP3 RecName: Full=Ribosome-binding factor A
 gi|71146313|gb|AAZ26786.1| ribosome-binding factor A [Colwellia psychrerythraea 34H]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 8/110 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RVG++++  +   IL  E +D  +S  + ++S V ++ DL  A ++++   D + D 
Sbjct: 7   RTDRVGQQIQKEI-ATILMREIKDPRLS--MTTVSAVEVTRDLAYAKIFVTFFND-NQDE 62

Query: 71  VISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + ++L    +   +IR  +G+ LR  R +P LRF YD+S+    +++AL+
Sbjct: 63  IKASLEVLAEAEGYIRSLLGKRLR-ARIMPHLRFVYDSSMSEGVRMSALV 111


>gi|82702984|ref|YP_412550.1| ribosome-binding factor A [Nitrosospira multiformis ATCC 25196]
 gi|123544258|sp|Q2Y7W3|RBFA_NITMU RecName: Full=Ribosome-binding factor A
 gi|82411049|gb|ABB75158.1| ribosome-binding factor A [Nitrosospira multiformis ATCC 25196]
          Length = 126

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 5/113 (4%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           PK+  R LR+ ++++  L  +I  NE +D  I   +I+++ V +S D   A V+ +   +
Sbjct: 2   PKDYSRTLRIADQIQRELADLI-RNELKDPRIG--MITLTGVEVSQDYAHAKVFYTTLHN 58

Query: 66  VSPDRVI-SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            S + ++ + L     F+R ++   L+ LR +P+L F YD S++   +L+ L+
Sbjct: 59  ESDNFLVQNGLENAAGFLRTQLLHRLK-LRVIPQLHFIYDESIERGVRLSQLI 110


>gi|288926934|ref|ZP_06420832.1| ribosome-binding factor A [Prevotella buccae D17]
 gi|315607048|ref|ZP_07882052.1| ribosome-binding factor A [Prevotella buccae ATCC 33574]
 gi|288336293|gb|EFC74676.1| ribosome-binding factor A [Prevotella buccae D17]
 gi|315251102|gb|EFU31087.1| ribosome-binding factor A [Prevotella buccae ATCC 33574]
          Length = 112

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-R 91
           Q R +   ++S++   +S DL V T Y+S+         +  +  N K +R  +GR + +
Sbjct: 24  QTRQMRGMMVSVTRAKVSPDLSVCTAYLSVFPSEKGAETLKNITANEKSVRFELGRRVGK 83

Query: 92  NLRYVPELRFRYDTSLQSYWKLNALM 117
            LR +PELRF  D SL     ++ L+
Sbjct: 84  QLRIIPELRFFLDDSLDYLEHIDELL 109


>gi|116624265|ref|YP_826421.1| ribosome-binding factor A [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122253043|sp|Q01W29|RBFA_SOLUE RecName: Full=Ribosome-binding factor A
 gi|116227427|gb|ABJ86136.1| ribosome-binding factor A [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 123

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           + RR LRV E VR  L  +I       R++  +V   +EV +S D R A++ I+   D  
Sbjct: 2   DERRTLRVSEAVREELSEIISFEMDDPRVLEAEV---TEVMVSPDSRHASIKIACRGDEK 58

Query: 68  P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
             +  I+AL     ++R  +   L  LR+VPEL F  D
Sbjct: 59  KQNHAIAALEHAAGYLRRELASRL-QLRHVPELHFERD 95


>gi|225023302|ref|ZP_03712494.1| hypothetical protein EIKCOROL_00155 [Eikenella corrodens ATCC
           23834]
 gi|224943947|gb|EEG25156.1| hypothetical protein EIKCOROL_00155 [Eikenella corrodens ATCC
           23834]
          Length = 123

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           I+I+EV ++ D   ATVY ++  D + +    AL      +R  + R ++  +  PEL F
Sbjct: 38  ITINEVELTRDYSHATVYYTVLDDATREITAEALEHAKGHLRSELSRRIKLFK-TPELHF 96

Query: 102 RYDTSLQSYWKLNALM 117
           +YD SL+    ++ L+
Sbjct: 97  KYDQSLERGMSISQLI 112


>gi|223984476|ref|ZP_03634609.1| hypothetical protein HOLDEFILI_01903 [Holdemania filiformis DSM
           12042]
 gi|223963547|gb|EEF67926.1| hypothetical protein HOLDEFILI_01903 [Holdemania filiformis DSM
           12042]
          Length = 114

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 42  ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           ++I++V ++ D   AT+Y+S L  +      + ALN    FIR  +G+ L ++R VP+L 
Sbjct: 32  VTITDVQVTNDYSYATIYVSFLGKEERKQAGLKALNRAKGFIRSELGKRL-SIRKVPDLI 90

Query: 101 FRYDTSLQSYWKLNALMC 118
           F+ D SL+   ++++++ 
Sbjct: 91  FKLDDSLEKGERIDSIIS 108


>gi|167756912|ref|ZP_02429039.1| hypothetical protein CLORAM_02461 [Clostridium ramosum DSM 1402]
 gi|237734620|ref|ZP_04565101.1| ribosome-binding factor A [Mollicutes bacterium D7]
 gi|167703087|gb|EDS17666.1| hypothetical protein CLORAM_02461 [Clostridium ramosum DSM 1402]
 gi|229382440|gb|EEO32531.1| ribosome-binding factor A [Coprobacillus sp. D7]
          Length = 115

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 43  SISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +I+ V  + DL +A VY++ L  D    + + ALN +  FIR  + + L  +R VPEL F
Sbjct: 33  TITAVDTTTDLSIAKVYVTFLGKDFDTRKGMEALNRSKGFIRSLLAKRL-TIRKVPELIF 91

Query: 102 RYDTSLQSYWKLNALM 117
             DTSL+   K+  ++
Sbjct: 92  VNDTSLEYGNKIEKII 107


>gi|304310508|ref|YP_003810106.1| Ribosome-binding factor A [gamma proteobacterium HdN1]
 gi|301796241|emb|CBL44449.1| Ribosome-binding factor A [gamma proteobacterium HdN1]
          Length = 145

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 66/117 (56%), Gaps = 7/117 (5%)

Query: 5   NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LP 63
           +P+  +R  R+ ++++  L  V+L  E  D  +   ++++S V ++ DL  A VY+S + 
Sbjct: 4   SPRGYKRTDRIADQIQREL-AVLLQREISDPRVG--MVTVSGVKVARDLSFADVYVSFMT 60

Query: 64  LDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           L+ + +  + ++ L     F+R  + ++++ LR +P LRF +D  + +   +++L+ 
Sbjct: 61  LEKAEEVKQALAVLEHASGFLRSMLAKNIK-LRVIPRLRFHFDQVIVTGPHISSLIT 116


>gi|329119691|ref|ZP_08248372.1| ribosome-binding factor A [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464288|gb|EGF10592.1| ribosome-binding factor A [Neisseria bacilliformis ATCC BAA-1200]
          Length = 123

 Score = 40.8 bits (94), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 8/126 (6%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
           NK  +   R  RV E++   L  ++       R      I+I+EV +S D   AT+Y ++
Sbjct: 2   NKTRRGYARQDRVKEQIMRELAEMVRTGLKDPRA---GFITINEVDVSRDYSHATIYYTV 58

Query: 63  PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
             D + D   +AL      +R  + + ++  +  PEL F+YD SL+    ++ L+     
Sbjct: 59  LDDSTRDITEAALEHAKGHLRSELAKRIKLFK-TPELHFKYDQSLERGMSISHLIE---- 113

Query: 123 PVALEK 128
            VA EK
Sbjct: 114 QVAAEK 119


>gi|169350442|ref|ZP_02867380.1| hypothetical protein CLOSPI_01210 [Clostridium spiroforme DSM 1552]
 gi|169292762|gb|EDS74895.1| hypothetical protein CLOSPI_01210 [Clostridium spiroforme DSM 1552]
          Length = 114

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 43  SISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +I+ V ++ DL +A +Y++ L  D    + + AL  +  FIR  + + L  +R VPEL F
Sbjct: 33  TITAVDLTNDLSIAKIYVTFLGKDFDTRKGMQALERSKGFIRSLLAKRL-TIRKVPELHF 91

Query: 102 RYDTSLQSYWKLNALM 117
             DTSLQ   K+  ++
Sbjct: 92  VNDTSLQYGNKIEKII 107


>gi|83815185|ref|YP_445893.1| ribosome-binding factor A [Salinibacter ruber DSM 13855]
 gi|294507803|ref|YP_003571861.1| Ribosome-binding factor A [Salinibacter ruber M8]
 gi|123528568|sp|Q2S1N8|RBFA_SALRD RecName: Full=Ribosome-binding factor A
 gi|83756579|gb|ABC44692.1| ribosome-binding factor A [Salinibacter ruber DSM 13855]
 gi|294344131|emb|CBH24909.1| Ribosome-binding factor A [Salinibacter ruber M8]
          Length = 132

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR--VISALNCNIKFIRG 84
           IL  E+ DRL  + +++I+   ++ DL +A +Y S+  D + +R      L      IR 
Sbjct: 19  ILQREYADRL--QPMVTITRARVTGDLSIAYLYASVMGDTAEEREATFRQLESLADEIRN 76

Query: 85  RIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
           ++   +R+ +R +PEL+F +D SL+   ++  L 
Sbjct: 77  QLASRIRHKVREIPELKFFHDESLEEAKRMENLF 110


>gi|221134840|ref|ZP_03561143.1| ribosome-binding factor A [Glaciecola sp. HTCC2999]
          Length = 144

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 6/111 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RV ++V   +   ILN EF+ +     ++++S V +S DL  A VY++  L++  ++
Sbjct: 7   RTDRVSQQVHKEIAS-ILNQEFKHQAPELCMVTVSGVEISRDLAHAKVYVTF-LEMDEEK 64

Query: 71  V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           V   ++ L     F+RG + R +R +R  P L+F  D S+    +++ ++ 
Sbjct: 65  VKASMALLEEGKGFVRGLLSRRVR-MRNTPALKFIQDRSITEGMRISNIVS 114


>gi|109898016|ref|YP_661271.1| ribosome-binding factor A [Pseudoalteromonas atlantica T6c]
 gi|123064712|sp|Q15V71|RBFA_PSEA6 RecName: Full=Ribosome-binding factor A
 gi|109700297|gb|ABG40217.1| ribosome-binding factor A [Pseudoalteromonas atlantica T6c]
          Length = 138

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
           R  RVG+++   +   IL NEF++R     ++++S V +S DL    +Y++   +     
Sbjct: 7   RTDRVGQQIHKEIAS-ILQNEFKNRDPRLGMVTVSAVEVSRDLAYTKIYVTFFENDEEVM 65

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D  +S L  N  +IR  +   +R +R VP ++F  D SL    +++ L+
Sbjct: 66  DNYLSILEENKGYIRTLLANRMR-MRAVPAIKFVRDGSLSEGIRISNLV 113


>gi|227513186|ref|ZP_03943235.1| ribosome-binding factor A [Lactobacillus buchneri ATCC 11577]
 gi|227083567|gb|EEI18879.1| ribosome-binding factor A [Lactobacillus buchneri ATCC 11577]
          Length = 116

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++++ V ++ DL+ AT+Y S+  D   D   +A  L      IRG +G  L ++   PE+
Sbjct: 33  VTLTGVEVTGDLQQATIYYSILSDDKADEETTAKGLEKATGLIRGELGSRL-SIYKTPEI 91

Query: 100 RFRYDTSLQSYWKLN 114
           +F  DTS+Q   K++
Sbjct: 92  KFELDTSVQYGDKID 106


>gi|260061333|ref|YP_003194413.1| ribosome-binding factor A [Robiginitalea biformata HTCC2501]
 gi|88785465|gb|EAR16634.1| ribosome-binding factor A [Robiginitalea biformata HTCC2501]
          Length = 135

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           ++S+++V ++ DL +A VY+S+        +I  +       R  + R  RN LR VPEL
Sbjct: 39  ILSVTKVHVTSDLSIAKVYVSIFPVKEATGLIKGIQAQKAQFRHELARRTRNQLRRVPEL 98

Query: 100 RFRYDTSLQ 108
           +F  D SL+
Sbjct: 99  QFYLDDSLE 107


>gi|149369322|ref|ZP_01889174.1| ribosome-binding factor A [unidentified eubacterium SCB49]
 gi|149356749|gb|EDM45304.1| ribosome-binding factor A [unidentified eubacterium SCB49]
          Length = 131

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S+V ++VDL +A VY+S+    +   ++  +N     I+ ++ +  R+ LR +PEL
Sbjct: 35  LISVSKVNVTVDLSIAKVYVSVFPTTNAAAIVKEINDGKSKIKHQVAQLTRHQLRRMPEL 94

Query: 100 RFRYDTSL 107
            F  D SL
Sbjct: 95  HFFNDDSL 102


>gi|331006258|ref|ZP_08329578.1| Ribosome-binding factor A [gamma proteobacterium IMCC1989]
 gi|330419947|gb|EGG94293.1| Ribosome-binding factor A [gamma proteobacterium IMCC1989]
          Length = 130

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--- 62
            K   R+ RV + ++  L   I   E +D  +   ++++++V ++ D+  A VY++    
Sbjct: 2   AKEFSRSDRVADAIQRILATTI-RQEVRDPRVG--MVNVNDVTVTRDMAYAKVYVTFVGR 58

Query: 63  PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             D        ALN    F+RG + + L ++R  P+LRF YD +     KL+ L+
Sbjct: 59  DSDTESREAADALNHAAGFLRGIVAKEL-DIRITPKLRFIYDKTSVEGQKLSNLI 112


>gi|188577679|ref|YP_001914608.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522131|gb|ACD60076.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 115

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +S+S+V +S DL  A V+++          +  L      +R ++ R+++ LR+VPEL F
Sbjct: 21  VSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKDIAGQLRTQLARAMK-LRHVPELHF 79

Query: 102 RYDTSLQSYWKLNALM 117
            YD S+    +++ L+
Sbjct: 80  HYDDSVDRGERIDNLL 95


>gi|46446394|ref|YP_007759.1| putative ribosome binding factor A [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|61215033|sp|Q6MD65|RBFA_PARUW RecName: Full=Ribosome-binding factor A
 gi|46400035|emb|CAF23484.1| putative ribosome binding factor A [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 131

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 40  DVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
           ++++++ V +S DLR A V+IS+   + +    I ALN    FI     + +  +RY PE
Sbjct: 32  ELVTVTRVQISRDLRYAKVFISIIGSEQAKVETIEALNSAAGFIAVNASQKVV-MRYFPE 90

Query: 99  LRFRYDTSLQSYWKLNALM 117
           L F+ D S+  + ++  L+
Sbjct: 91  LNFKLDDSVDKHMRIEELL 109


>gi|28198123|ref|NP_778437.1| ribosome-binding factor A [Xylella fastidiosa Temecula1]
 gi|182680751|ref|YP_001828911.1| ribosome-binding factor A [Xylella fastidiosa M23]
 gi|32129950|sp|Q87EV3|RBFA_XYLFT RecName: Full=Ribosome-binding factor A
 gi|238691074|sp|B2I727|RBFA_XYLF2 RecName: Full=Ribosome-binding factor A
 gi|28056183|gb|AAO28086.1| ribosomal-binding factor A [Xylella fastidiosa Temecula1]
 gi|182630861|gb|ACB91637.1| ribosome-binding factor A [Xylella fastidiosa M23]
 gi|307579215|gb|ADN63184.1| ribosome-binding factor A [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 125

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +S+S+V ++ D+  A V+++          ++ L    + +R ++ +++R LR+VPEL F
Sbjct: 36  MSVSDVEVTRDMAHAKVFVTALQAERSFEAVAGLKALARELRMQLAQTMR-LRFVPELHF 94

Query: 102 RYDTSLQSYWKLNALM 117
            YD SL    +++ L+
Sbjct: 95  HYDDSLDRGERIDTLL 110


>gi|257865913|ref|ZP_05645566.1| ribosome-binding factor A [Enterococcus casseliflavus EC30]
 gi|257872246|ref|ZP_05651899.1| ribosome-binding factor A [Enterococcus casseliflavus EC10]
 gi|257875540|ref|ZP_05655193.1| ribosome-binding factor A [Enterococcus casseliflavus EC20]
 gi|325569924|ref|ZP_08145918.1| ribosome-binding factor A [Enterococcus casseliflavus ATCC 12755]
 gi|257799847|gb|EEV28899.1| ribosome-binding factor A [Enterococcus casseliflavus EC30]
 gi|257806410|gb|EEV35232.1| ribosome-binding factor A [Enterococcus casseliflavus EC10]
 gi|257809706|gb|EEV38526.1| ribosome-binding factor A [Enterococcus casseliflavus EC20]
 gi|325157047|gb|EGC69215.1| ribosome-binding factor A [Enterococcus casseliflavus ATCC 12755]
          Length = 116

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 10/115 (8%)

Query: 5   NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
           N ++ R A  + +EV   L   + +   QD       ++I++V ++ DL+ AT++ S   
Sbjct: 3   NYRDRRVAQEILKEVNQILRKKVRDPRVQD-------VTITDVRVTGDLQQATIFYSTLT 55

Query: 65  DVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D++ D  +  + L      +R  +G++L  L  VPE++F  D S+Q   K++ ++
Sbjct: 56  DLASDKQKAQAGLEKATGLVRRELGQAL-TLYKVPEIQFELDESVQYGNKIDEMI 109


>gi|30248766|ref|NP_840836.1| ribosome-binding factor A [Nitrosomonas europaea ATCC 19718]
 gi|34098452|sp|Q82WC9|RBFA_NITEU RecName: Full=Ribosome-binding factor A
 gi|30180361|emb|CAD84673.1| Ribosome-binding factor A [Nitrosomonas europaea ATCC 19718]
          Length = 117

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV-YISLPLDVSPD 69
           R +RV ++++  L  +I  NE  D  +   +++++ V ++ D   A V Y +L  D +  
Sbjct: 7   RTVRVADQIQRELALLI-QNEIMDPRVG--MVTLTGVEVTRDYAYAKVFYTTLGGDENIQ 63

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            V   L     F+R ++   +R LR VP+L+F YD S++   KL+ L+
Sbjct: 64  LVEEGLKHAAGFLRSQLAGKIR-LRVVPQLQFVYDESVERGMKLSRLI 110


>gi|86144147|ref|ZP_01062484.1| ribosome-binding factor A [Leeuwenhoekiella blandensis MED217]
 gi|85829409|gb|EAQ47874.1| ribosome-binding factor A [Leeuwenhoekiella blandensis MED217]
          Length = 130

 Score = 40.0 bits (92), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 41  VISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIG-RSLRNLRYVPE 98
           ++S+S+V ++ DL  A VYIS+ P D + + ++  ++    FI+  I  R+   LR +PE
Sbjct: 34  IVSVSKVNVTTDLSQAKVYISVFPHDKASE-ILKEVSAVKPFIKHEIANRTRHQLRRMPE 92

Query: 99  LRFRYDTSLQ 108
           L+F  D SL+
Sbjct: 93  LQFYIDDSLE 102


>gi|318042498|ref|ZP_07974454.1| ribosome-binding factor A [Synechococcus sp. CB0101]
          Length = 136

 Score = 40.0 bits (92), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
             RR  RV   +R  +  +++N    DR +S  ++S++ V ++ DL+   +Y+S+  +  
Sbjct: 3   QGRRVERVAALIRREVSELLVNGIKDDR-VSLGMVSVTNVEVAGDLQHCKIYVSVYGNPE 61

Query: 68  -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              + ++ L     +++G +GR L N+R  PE+ F  D  ++    +  L+
Sbjct: 62  VQQQALAGLRSAASYVKGELGRRL-NMRRTPEVIFHLDRGIEKGTSVLGLL 111


>gi|91200790|emb|CAJ73843.1| similar to ribosome-binding factor A [Candidatus Kuenenia
           stuttgartiensis]
          Length = 125

 Score = 40.0 bits (92), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 5/98 (5%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
           + RRA R+ E ++  +  +IL      RL     I+++EV +S DL+   VY+S L  ++
Sbjct: 2   SKRRAERLSEFIKQEVSKIILYKVKDPRL---SFITVTEVDISADLKNVKVYVSVLGNEL 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
                +  L+    FI+  +G  LR ++Y P L+F  D
Sbjct: 59  ERKNTMCGLDHAKGFIQTELGSCLR-IKYTPHLKFCLD 95


>gi|225619655|ref|YP_002720912.1| ribosome-binding factor A [Brachyspira hyodysenteriae WA1]
 gi|225214474|gb|ACN83208.1| ribosome-binding factor A [Brachyspira hyodysenteriae WA1]
          Length = 101

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 31  EFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL 90
           E +D  I  ++++I++V  + DL+ A VY     +   + V++ LN     I   + + L
Sbjct: 3   EIEDPRIKNNLVTITKVDTAKDLKNAKVYFVCLREDKQNEVLNGLNSAKGVIFSYLKKQL 62

Query: 91  RNLRYVPELRFRYDTSL 107
             +RYVP L F YD +L
Sbjct: 63  -TIRYVPNLTFHYDKNL 78


>gi|291546822|emb|CBL19930.1| ribosome-binding factor A [Ruminococcus sp. SR1/5]
          Length = 122

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  RV   V+  L   I+++E +D  I   + S++ V ++ DL+    YIS L   
Sbjct: 3   KNSIKNTRVNGAVQKEL-STIIHSEIKDPRI-HPMTSVTAVEVAPDLKTCKAYISVLGEK 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            + D  +  L     ++R  + R L NLR  PE+RF  D S++
Sbjct: 61  QAKDSTLRGLKNAEGYVRRELARRL-NLRNTPEIRFVLDESIE 102


>gi|119470823|ref|ZP_01613434.1| ribosome-binding factor A, role in processing of 16S rRNA
           [Alteromonadales bacterium TW-7]
 gi|119446050|gb|EAW27329.1| ribosome-binding factor A, role in processing of 16S rRNA
           [Alteromonadales bacterium TW-7]
          Length = 148

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R  RVG++++  +  VIL  E +D  +   ++++S V +S DL  A ++I++      D 
Sbjct: 6   RTDRVGQQIQKEI-AVILQREIKDPRLG--MVTVSAVEVSRDLSYAKIFITVFNTKDEDA 62

Query: 70  --RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +    LN    +IR  +G+ +R  R +PEL+F  D SL    +++ L+
Sbjct: 63  AKQSAKVLNEATGYIRSLLGKRIR-ARIMPELKFVVDNSLMEGMRISNLV 111


>gi|114562169|ref|YP_749682.1| ribosome-binding factor A [Shewanella frigidimarina NCIMB 400]
 gi|122300516|sp|Q086H1|RBFA_SHEFN RecName: Full=Ribosome-binding factor A
 gi|114333462|gb|ABI70844.1| ribosome-binding factor A [Shewanella frigidimarina NCIMB 400]
          Length = 143

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 6/114 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  R+ ++++  L  V L  + +D  I    +++++V +S DL  A VY++   + 
Sbjct: 3   KEFSRTRRIAQQLQQELAMV-LQRDMKDPRIG--FVTVNDVDVSRDLSYAKVYVTFFEED 59

Query: 67  SP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           +    + I AL     ++R  +   ++ LR +PELRF YD+SL    +++ L+ 
Sbjct: 60  TELVQQKIDALTVAAPYVRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVT 112


>gi|325981565|ref|YP_004293967.1| ribosome-binding factor A [Nitrosomonas sp. AL212]
 gi|325531084|gb|ADZ25805.1| ribosome-binding factor A [Nitrosomonas sp. AL212]
          Length = 127

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 5/113 (4%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           PK+  R+LR+ ++++  L  +I  NE +D  I +  ++I+ V ++ D   A ++ +    
Sbjct: 2   PKDFSRSLRIADQIQRELADLI-QNEIKDPRIKQ--LTITAVEVTRDYSHAKIFYTTLTH 58

Query: 66  VSPDRVIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              + +I   L     F+R  +   ++ LR VP+L F YD S++   +L+ L+
Sbjct: 59  QDENFLIEKGLEHATGFLRSNLSHRMK-LRLVPQLHFIYDESVERGVRLSKLI 110


>gi|254282436|ref|ZP_04957404.1| ribosome-binding factor A [gamma proteobacterium NOR51-B]
 gi|219678639|gb|EED34988.1| ribosome-binding factor A [gamma proteobacterium NOR51-B]
          Length = 134

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 12/101 (11%)

Query: 17  EEVRSALMWVILNNEFQDRLISRDV-------ISISEVCMSVDLRVATVYIS-LPLDV-- 66
           E  RS  +   L  E   RLI ++V       +S++ V ++ D   A VY + L +D   
Sbjct: 4   EFTRSQRVGDFLQQELA-RLIQQEVRDPRAHMVSVTGVDVTRDFAHAKVYYTQLGVDSRE 62

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           + +     LN    F+R RI RS   +R VP L+FR+D S+
Sbjct: 63  AAEETTQVLNGAAGFLRSRIARSA-TMRTVPRLQFRFDESV 102


>gi|154485023|ref|ZP_02027471.1| hypothetical protein EUBVEN_02741 [Eubacterium ventriosum ATCC
           27560]
 gi|149733976|gb|EDM50095.1| hypothetical protein EUBVEN_02741 [Eubacterium ventriosum ATCC
           27560]
          Length = 92

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 41  VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           + S++ V ++ DL+   VYIS L  + +    ++ L     FIR  + R++ NLR  PEL
Sbjct: 1   MTSVTGVEVTPDLKFCKVYISVLGDEEAKADTMAGLKSAAGFIRRELARTV-NLRNTPEL 59

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D S++   K++ L+
Sbjct: 60  KFVMDQSIEYGMKMSKLI 77


>gi|332686764|ref|YP_004456538.1| ribosome-binding factor A [Melissococcus plutonius ATCC 35311]
 gi|332370773|dbj|BAK21729.1| ribosome-binding factor A [Melissococcus plutonius ATCC 35311]
          Length = 116

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 6/109 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R  RVG+E+   +   IL  + +D  +    I+I++V ++ DL+ AT+Y SL  D++ D 
Sbjct: 5   RDRRVGQEILHEIND-ILRKKIRDPRLQE--ITITDVRVTGDLQQATIYYSLLSDLASDQ 61

Query: 70  -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +V   L      IR  +G+ L  L   PEL F  D S+Q    ++ L+
Sbjct: 62  QKVQQGLEKAKGLIRRELGQRL-TLYKTPELFFEKDESVQYGNHVDKLL 109


>gi|163752372|ref|ZP_02159567.1| ribosome-binding factor A [Shewanella benthica KT99]
 gi|161327744|gb|EDP98931.1| ribosome-binding factor A [Shewanella benthica KT99]
          Length = 140

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 12/118 (10%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  R+G++++  L  V L+ + +D  +   ++++++V +S DL  A V+++    
Sbjct: 2   AKEFSRTRRIGQQLQQELAQV-LHRDIKDPRVG--MVTVNDVEVSRDLSYAKVFVTF--- 55

Query: 66  VSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              D  I      AL+    +IR  +   ++ LR +PELRF YD SL    +++ L+ 
Sbjct: 56  FEEDEKIVAQKLEALSSAAGYIRSLVAGRMK-LRVMPELRFIYDASLVEGMRMSNLVT 112


>gi|85057849|ref|YP_456765.1| ribosome-binding factor A [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789954|gb|ABC65686.1| ribosome-binding factor A [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 113

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 11/92 (11%)

Query: 26  VILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIK 80
           V++N+  QD  I    I++++V ++ DL  A VY ++   +S D  +       +  N  
Sbjct: 17  VLINDVIQDEQIG--YINLTDVKVTKDLSFANVYYTI---LSDDPAVLKLTEETIEQNKV 71

Query: 81  FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
            IR  + + ++N R +P+L F+YD SL SY +
Sbjct: 72  VIRFELAKKIKNFRKIPDLVFKYDKSL-SYGR 102


>gi|212634075|ref|YP_002310600.1| ribosome-binding factor A [Shewanella piezotolerans WP3]
 gi|226736651|sp|B8CKH4|RBFA_SHEPW RecName: Full=Ribosome-binding factor A
 gi|212555559|gb|ACJ28013.1| Ribosome-binding factor A [Shewanella piezotolerans WP3]
          Length = 142

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  R+ ++++  L  V+L  + +D  I    +++++V +S DL  A V+++   +
Sbjct: 2   AKEFSRTRRIAQQLQQEL-AVVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58

Query: 66  VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
                   + AL+    +IR  +   ++ LR +PELRF YD+SL    +++ L+ 
Sbjct: 59  DEKLVQEKVEALDAAAGYIRSLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVS 112


>gi|294142059|ref|YP_003558037.1| ribosome-binding factor A [Shewanella violacea DSS12]
 gi|293328528|dbj|BAJ03259.1| ribosome-binding factor A [Shewanella violacea DSS12]
          Length = 140

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 12/118 (10%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  R+G++++  L  V L+ + +D  +   ++++++V +S DL  A V+++    
Sbjct: 2   AKEFSRTRRIGQQLQQELAQV-LHRDIKDPRVG--MVTVNDVEVSRDLSYAKVFVTF--- 55

Query: 66  VSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              D  I      AL+    +IR  +   ++ LR +PELRF YD SL    +++ L+ 
Sbjct: 56  FEEDEKIVAVKLEALSSAAGYIRSLVAGRMK-LRVMPELRFIYDASLVEGMRMSNLVT 112


>gi|225572732|ref|ZP_03781487.1| hypothetical protein RUMHYD_00921 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039905|gb|EEG50151.1| hypothetical protein RUMHYD_00921 [Blautia hydrogenotrophica DSM
           10507]
          Length = 126

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  RV  EV   L  +I  NE +D  I   + S+  V ++ DL+    YIS L   
Sbjct: 3   KNSIKNTRVNTEVLRELSNII-RNEIKDPRI-HPMTSVMAVEVAPDLKTCKAYISVLGNQ 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +  +  L     ++R ++ R+L NLR  PE+RF  D S++    ++ L+
Sbjct: 61  EAQEETMVGLKSAESYVRRQLARNL-NLRNTPEIRFLLDQSIEYGVHMSKLI 111


>gi|329577089|gb|EGG58562.1| ribosome-binding factor A [Enterococcus faecalis TX1467]
          Length = 116

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 6/111 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R  RVG+E+   +   ILN   +D  +    I+I++V ++ DL+ AT+Y SL  D++ + 
Sbjct: 5   RDRRVGQEIMREVND-ILNKRIRDPRVQ--GITITDVRVTGDLQQATIYYSLLSDLASEQ 61

Query: 70  -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
            +    L+     IR  +G+ L  L   PEL F  D S+Q    ++ L+ L
Sbjct: 62  QKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELIQL 111


>gi|163814222|ref|ZP_02205614.1| hypothetical protein COPEUT_00376 [Coprococcus eutactus ATCC 27759]
 gi|158450671|gb|EDP27666.1| hypothetical protein COPEUT_00376 [Coprococcus eutactus ATCC 27759]
          Length = 134

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  R+  EV+  L  +I + E +D  IS  + S+ +V ++ DL+    YIS+  D 
Sbjct: 3   KNSVKNNRINGEVQRELSRII-SREIKDPRISP-MTSVVDVVVTPDLKFCKAYISVLGDQ 60

Query: 67  SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              D   + L   + +IR  +  S+ NLR  PE+ F  D S++
Sbjct: 61  DAVDSTFAGLTSAMGYIRRELAHSV-NLRNTPEITFIMDQSIE 102


>gi|325921394|ref|ZP_08183251.1| ribosome-binding factor A [Xanthomonas gardneri ATCC 19865]
 gi|325548152|gb|EGD19149.1| ribosome-binding factor A [Xanthomonas gardneri ATCC 19865]
          Length = 130

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 12/115 (10%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R  RV  +VR  L   I++   +D  +    +S+S+V ++ DL  A V+++    +
Sbjct: 4   KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEVTRDLAHAKVFVTA---L 57

Query: 67  SPDRVISALNCNIKFIRGRI----GRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +R + A+   +K I G++     R+++ LR+VPEL F YD S+    +++ L+
Sbjct: 58  QQERSVEAVK-GLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110


>gi|74316714|ref|YP_314454.1| ribosome-binding factor A [Thiobacillus denitrificans ATCC 25259]
 gi|123612206|sp|Q3SKX2|RBFA_THIDA RecName: Full=Ribosome-binding factor A
 gi|74056209|gb|AAZ96649.1| ribosome-binding factor A [Thiobacillus denitrificans ATCC 25259]
          Length = 124

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL 64
           PK+  RA RV ++++  L  +I   E +D  +   +++I+EV ++ D+  A VY + +  
Sbjct: 2   PKDFPRARRVADQIQRELPELI-RQEVKDPRVG--MLTITEVEVNRDMEFAKVYFTTMGG 58

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +      +  L     F+R ++   +  LR VP+L F YD S++    L+ L+
Sbjct: 59  EAEHAACLQGLQRASGFLRSQLSHRM-QLRVVPKLTFVYDRSVEHGMALSRLI 110


>gi|296111955|ref|YP_003622337.1| ribosome-binding factor A [Leuconostoc kimchii IMSNU 11154]
 gi|295833487|gb|ADG41368.1| ribosome-binding factor A [Leuconostoc kimchii IMSNU 11154]
          Length = 117

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           N +RA R+ +EV+  +  ++L      R+     I+I+ V +S DL++AT+Y S   D++
Sbjct: 3   NPQRAGRLAQEVQRDVTDLLLKRINDPRVQD---ITITSVELSGDLQIATIYYSTLSDLA 59

Query: 68  P--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
               +  + L+     IR  +G  L  +   PEL+F  D S+Q
Sbjct: 60  SVGQKAQAGLDAASGLIRKELGSRL-TVYKTPELKFVRDQSIQ 101


>gi|170076709|ref|YP_001733347.1| ribosome-binding factor A [Synechococcus sp. PCC 7002]
 gi|238692796|sp|B1XLD1|RBFA_SYNP2 RecName: Full=Ribosome-binding factor A
 gi|169884378|gb|ACA98091.1| ribosome-binding factor A [Synechococcus sp. PCC 7002]
          Length = 131

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
           NSRR  +V   ++  +  +++ +   DR +   ++SI+EV +S DL+ A +++S+   + 
Sbjct: 3   NSRRVSKVSSLIKREVSLMLMQDIKDDR-VGAGMVSITEVEVSGDLQHAKIFVSIYGSEE 61

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +    +  L  +  F+R  +G+ +R LR  PE+ F  D SL+   ++  L+
Sbjct: 62  ARAETMEGLRASQGFVRRTLGQRIR-LRRSPEVLFIEDRSLEEGDRMIHLI 111


>gi|39938637|ref|NP_950403.1| ribosome-binding factor A [Onion yellows phytoplasma OY-M]
 gi|39721746|dbj|BAD04236.1| ribosome-binding factor A [Onion yellows phytoplasma OY-M]
          Length = 113

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 11/92 (11%)

Query: 26  VILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIK 80
           V++N+  QD  I    I++++V ++ DL  A VY ++   +S D  +       +  N  
Sbjct: 17  VLINDVIQDEQIG--YINLTDVKVTKDLSFANVYYTI---LSDDPTVLKLTEETIEQNKV 71

Query: 81  FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
            IR  + + ++N R +P+L F+YD SL SY +
Sbjct: 72  VIRLELAKKIKNFRKIPDLVFKYDKSL-SYGR 102


>gi|78189422|ref|YP_379760.1| ribosome-binding factor A [Chlorobium chlorochromatii CaD3]
 gi|123579528|sp|Q3AQK8|RBFA_CHLCH RecName: Full=Ribosome-binding factor A
 gi|78171621|gb|ABB28717.1| ribosome-binding factor A [Chlorobium chlorochromatii CaD3]
          Length = 123

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 12/121 (9%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---LPLD 65
           SRR  RV     ++L+   L   FQ  L    +++I EV ++VDL +A VYIS    P +
Sbjct: 2   SRRTERV-----ASLLQHELGAIFQLELPRTPIVTIVEVKVTVDLGIARVYISTIGTPEE 56

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMC-LPKIP 123
            +   +++ L    K+IR  + + +R+  R +PEL F  D   +    +  L+  + K P
Sbjct: 57  QAA--IMAHLQEQNKYIRKLLSQRIRHQFRRIPELEFYEDHLYEHARHIEQLLSQVRKAP 114

Query: 124 V 124
           V
Sbjct: 115 V 115


>gi|32307616|gb|AAP79213.1| ribosome-binding factor A [Bigelowiella natans]
          Length = 198

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 13/122 (10%)

Query: 10  RRALRVGEEVRSALMWVILNN---------EFQDRLI-SRDVISISEVCMSVDLRVATVY 59
           RR  RVG E++  +  +++N+         ++ D  I +  + S++EV MS DL VA +Y
Sbjct: 65  RRIGRVGREIQREMGDLLVNDRNVLAAIDPKYDDDDIRNMTIASVTEVQMSRDLSVAKLY 124

Query: 60  I--SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  S     S   ++  LN    +IR  + + L NLR  PEL F  D +L    ++  +M
Sbjct: 125 LMFSGGTKKSYQPILDRLNAKKGYIRRVVSQRL-NLRRSPELVFYEDNTLNEADEMKRIM 183

Query: 118 CL 119
            +
Sbjct: 184 AV 185


>gi|167625058|ref|YP_001675352.1| ribosome-binding factor A [Shewanella halifaxensis HAW-EB4]
 gi|189039560|sp|B0TQA1|RBFA_SHEHH RecName: Full=Ribosome-binding factor A
 gi|167355080|gb|ABZ77693.1| ribosome-binding factor A [Shewanella halifaxensis HAW-EB4]
          Length = 142

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           +++++V +S DL  A VY++   +     ++ ++AL+    +IR  +   ++ LR +PEL
Sbjct: 35  VTVNDVDVSRDLSYAKVYVTFFEEDEKLVEQKVAALDAAAGYIRSLVAGRMK-LRVMPEL 93

Query: 100 RFRYDTSLQSYWKLNALMC 118
           RF YD+SL    +++ L+ 
Sbjct: 94  RFIYDSSLVEGMRMSNLVS 112


>gi|157962877|ref|YP_001502911.1| ribosome-binding factor A [Shewanella pealeana ATCC 700345]
 gi|189039561|sp|A8H739|RBFA_SHEPA RecName: Full=Ribosome-binding factor A
 gi|157847877|gb|ABV88376.1| ribosome-binding factor A [Shewanella pealeana ATCC 700345]
          Length = 142

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           +++++V +S DL  A VY++   +     ++ ++AL+    +IR  +   ++ LR +PEL
Sbjct: 35  VTVNDVDVSRDLSYAKVYVTFFEEDEKLVEQKVAALDAAAGYIRSLVAGRMK-LRVMPEL 93

Query: 100 RFRYDTSLQSYWKLNALMC 118
           RF YD+SL    +++ L+ 
Sbjct: 94  RFIYDSSLVEGMRMSNLVS 112


>gi|257784632|ref|YP_003179849.1| ribosome-binding factor A [Atopobium parvulum DSM 20469]
 gi|257473139|gb|ACV51258.1| ribosome-binding factor A [Atopobium parvulum DSM 20469]
          Length = 136

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K ++ + R  E  R  L W++L   F+       +++I+   +SVD     VY+S     
Sbjct: 2   KQNQFSRRTNEVAREKLSWILL---FEISDPDLQLVTITSCEVSVDKSFMRVYVS----C 54

Query: 67  SPDR---VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL-NALMCLP 120
            PDR   V++AL      IR  +G +L N R  PEL F+ DT+     ++  AL  +P
Sbjct: 55  EPDRYEKVLAALKRAKGRIRSLLGHAL-NWRVTPELDFKIDTTTDEAERIAQALEVVP 111


>gi|332291313|ref|YP_004429922.1| ribosome-binding factor A [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169399|gb|AEE18654.1| ribosome-binding factor A [Krokinobacter diaphorus 4H-3-7-5]
          Length = 130

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGR 85
           +L N  +D      ++S+++V +  DL +A VY+S+ P D + D ++  +N     IR  
Sbjct: 20  VLQNALRDSGKGGIIVSVTKVKVPTDLSIAKVYLSVFPNDKAAD-ILKEVNQVKPIIRHN 78

Query: 86  IGRSLRN-LRYVPELRFRYDTSLQ 108
           I +  R+ LR +PEL+F  D +L+
Sbjct: 79  ISQRTRHQLRRMPELQFFIDDTLE 102


>gi|114046598|ref|YP_737148.1| ribosome-binding factor A [Shewanella sp. MR-7]
 gi|123326767|sp|Q0HXR4|RBFA_SHESR RecName: Full=Ribosome-binding factor A
 gi|113888040|gb|ABI42091.1| ribosome-binding factor A [Shewanella sp. MR-7]
          Length = 146

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  R+G++++  L  V+L  + +D  I    +++++V +S DL  A V+++   +
Sbjct: 2   AKEFSRTRRIGQQLQQEL-AVVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTF-FE 57

Query: 66  VSPDRVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              + V   LN  I    +IR  +   ++ LR +PE+RF YD+SL    +++ L+ 
Sbjct: 58  EDKEVVQEKLNALIAAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVS 112


>gi|154494028|ref|ZP_02033348.1| hypothetical protein PARMER_03373 [Parabacteroides merdae ATCC
           43184]
 gi|154086288|gb|EDN85333.1| hypothetical protein PARMER_03373 [Parabacteroides merdae ATCC
           43184]
          Length = 111

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 41  VISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPE 98
           +IS+S V +S DL VA  Y+S+ P D S + ++  +  N K IR  +G+ +R  +R +PE
Sbjct: 32  LISVSVVRVSPDLSVARAYLSIFPSDKSKE-MLENIRANTKAIRFDLGQRIRKQVRKIPE 90

Query: 99  LRFRYDTSLQSYWKLNALM 117
           L F  D SL     ++ L+
Sbjct: 91  LTFFIDDSLDYIENIDNLL 109


>gi|150021374|ref|YP_001306728.1| ribosome-binding factor A [Thermosipho melanesiensis BI429]
 gi|166199571|sp|A6LN42|RBFA_THEM4 RecName: Full=Ribosome-binding factor A
 gi|149793895|gb|ABR31343.1| ribosome-binding factor A [Thermosipho melanesiensis BI429]
          Length = 125

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           I IS V +S D R A V++S   D  S  R +  L     F R  I ++LR +   PELR
Sbjct: 37  IVISRVLVSKDKRFADVFVSYIGDADSRKRAVELLEKYKGFFRKYIAQNLR-IYTTPELR 95

Query: 101 FRYDTSLQSYWKLNALM 117
           F+ D  ++   ++N L+
Sbjct: 96  FKEDIGIEESIRINKLL 112


>gi|308050583|ref|YP_003914149.1| ribosome-binding factor A [Ferrimonas balearica DSM 9799]
 gi|307632773|gb|ADN77075.1| ribosome-binding factor A [Ferrimonas balearica DSM 9799]
          Length = 134

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 8/111 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RVG++++  L  +I+  E +D  +   +++++EV +S D+  A V+++  LD +P+ 
Sbjct: 7   RTRRVGQQLQREL-AMIIQREIRDERLG--MVTVNEVEVSRDMGYAKVFVTF-LDDNPEA 62

Query: 71  VISALNCNIKF---IRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           V   +   ++    IR  +  S   +R +PELRF YD SL    ++ +L+ 
Sbjct: 63  VKRQMEALLELTPQIR-MLTASRVKMRVMPELRFTYDKSLVEGIRMASLVS 112


>gi|313156820|gb|EFR56260.1| ribosome-binding factor A [Alistipes sp. HGB5]
          Length = 113

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 41  VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPE 98
           +++++ V +S D   A +Y+S  P   S   ++  L+ N KFIR  +G+ +RN ++ VPE
Sbjct: 33  LVTVTAVRVSPDFGYAKIYVSVFPFGRSA-ALMQELDRNNKFIRHALGQRIRNQVKNVPE 91

Query: 99  LRFRYDTSLQ 108
           ++F  D SL+
Sbjct: 92  IQFFLDDSLE 101


>gi|113969371|ref|YP_733164.1| ribosome-binding factor A [Shewanella sp. MR-4]
 gi|122944045|sp|Q0HLG0|RBFA_SHESM RecName: Full=Ribosome-binding factor A
 gi|113884055|gb|ABI38107.1| ribosome-binding factor A [Shewanella sp. MR-4]
          Length = 146

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  R+G++++  L  V+L  + +D  I    +++++V +S DL  A V+++   +
Sbjct: 2   AKEFSRTRRIGQQLQQEL-AVVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTF-FE 57

Query: 66  VSPDRVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              + V   LN  I    +IR  +   ++ LR +PE+RF YD+SL    +++ L+ 
Sbjct: 58  EDKEVVQEKLNALIAAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVS 112


>gi|325281252|ref|YP_004253794.1| Ribosome-binding factor A [Odoribacter splanchnicus DSM 20712]
 gi|324313061|gb|ADY33614.1| Ribosome-binding factor A [Odoribacter splanchnicus DSM 20712]
          Length = 111

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISAL---NCNIKFIRGR-IGRSLRNLRYV 96
           ++S++ V +S DL  A +Y+S+      + V+ +L   N +I+FI G+ +G+    +R V
Sbjct: 33  MLSVTAVRVSPDLSYAKIYVSIFPSERVEAVMKSLEEKNKSIRFILGKKVGK---QMRIV 89

Query: 97  PELRFRYDTSLQSYWKLNALM 117
           PELRF  D SL    K++ L+
Sbjct: 90  PELRFFVDDSLDYIDKIDELL 110


>gi|255080072|ref|XP_002503616.1| predicted protein [Micromonas sp. RCC299]
 gi|226518883|gb|ACO64874.1| predicted protein [Micromonas sp. RCC299]
          Length = 252

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++++++V +S DL+V  V++S+  D    +  I+ L     ++R  IG+ + +LR  P++
Sbjct: 96  MVTVADVEVSGDLQVVKVFVSILGDERGKKNAINGLKKMEGYVRRNIGKRV-SLRLTPDI 154

Query: 100 RFRYDTSLQSYWKLNALM 117
           RF YD S +   ++++L+
Sbjct: 155 RFVYDDSFERGQRVSSLL 172


>gi|225010311|ref|ZP_03700783.1| ribosome-binding factor A [Flavobacteria bacterium MS024-3C]
 gi|225005790|gb|EEG43740.1| ribosome-binding factor A [Flavobacteria bacterium MS024-3C]
          Length = 131

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
           +IS+S+V ++ DL +A VY+S+  +     ++  +  N   I+  + +  RN LR +P+L
Sbjct: 35  LISVSKVTVTTDLSIAKVYLSIFPEDRAKEMLEGIQSNQPLIKHELAKRTRNQLRRMPQL 94

Query: 100 RFRYDTSL 107
            F  D +L
Sbjct: 95  LFFIDDTL 102


>gi|238916827|ref|YP_002930344.1| ribosome-binding factor A [Eubacterium eligens ATCC 27750]
 gi|259551983|sp|C4Z5N8|RBFA_EUBE2 RecName: Full=Ribosome-binding factor A
 gi|238872187|gb|ACR71897.1| ribosome-binding factor A [Eubacterium eligens ATCC 27750]
          Length = 130

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  R+  EV   L  +I  +E +D  I+  + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSVKNTRINGEVLKELSNII-RSEIKDPRIN-PMTSVVAVEVAPDLKTCKAYISVLGDE 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              +  I+ L     +IR ++ R++ NLR  PE+RF  D S++    ++ L+
Sbjct: 61  KSQKDTITGLKSAEGYIRRQLARTV-NLRNTPEIRFILDQSIEYGINMSKLI 111


>gi|110639995|ref|YP_680205.1| ribosome-binding factor A [Cytophaga hutchinsonii ATCC 33406]
 gi|123163145|sp|Q11P01|RBFA_CYTH3 RecName: Full=Ribosome-binding factor A
 gi|110282676|gb|ABG60862.1| ribosome-binding factor A [Cytophaga hutchinsonii ATCC 33406]
          Length = 133

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELR 100
           ISI+ V MS DL VA +Y+S+ L    + ++  +  + K +R  +G  +R  +R +PE+ 
Sbjct: 34  ISITVVRMSPDLSVAKLYLSIMLQEDKNAILKEIKVHTKELRKLLGERIRKQVRIIPEII 93

Query: 101 FRYDTSLQSYWKLNALMCLPKIP 123
           F  D ++     ++ ++    IP
Sbjct: 94  FYLDDNVDYANHMDDVLSKITIP 116


>gi|259503129|ref|ZP_05746031.1| ribosome-binding factor A [Lactobacillus antri DSM 16041]
 gi|259168995|gb|EEW53490.1| ribosome-binding factor A [Lactobacillus antri DSM 16041]
          Length = 119

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 10/119 (8%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M NK  +  R A ++  EV   L+  + +   Q        ++I+ V ++ DL+ AT+Y 
Sbjct: 1   MPNKQYRVDRLAQQIQREVDDILLKRVRDPRVQG-------VTITGVDVTGDLQQATIYY 53

Query: 61  SLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S+  D + D  +V + L+     IR  +G  L N+   PE++F  D S+    +++ L+
Sbjct: 54  SILSDKASDLEKVQAGLDKATGLIRSELGARL-NIFKTPEIKFERDKSVAYGSRIDQLI 111


>gi|119486756|ref|ZP_01620731.1| ribosome-binding factor A [Lyngbya sp. PCC 8106]
 gi|119456049|gb|EAW37182.1| ribosome-binding factor A [Lyngbya sp. PCC 8106]
          Length = 142

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 10  RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
           RR  RV   ++  +  ++L  E +D  +   ++SI++V ++ DL+   +++S+   + + 
Sbjct: 5   RRVSRVAALIKREVSQILLQ-EVKDDRVGSGMVSITDVNVAGDLQHVKIFVSIYGTEEAR 63

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              +  L     +IR  +G+ +R LR  PE+ F  D SL+   K+ +L+
Sbjct: 64  KETMEGLRAATGYIRSSLGQRVR-LRRTPEVLFLEDRSLERGDKMLSLL 111


>gi|332884608|gb|EGK04865.1| ribosome-binding factor A [Dysgonomonas mossii DSM 22836]
          Length = 118

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
           ++++S V ++ DL +A VY+S+        ++  +  N+K IR  +G+ + + LR +PEL
Sbjct: 32  LVTVSTVRVTPDLGLAKVYLSIFPSEKGKELLENIRTNVKSIRFDLGQKVGKQLRVIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
            F  D SL     ++ L+
Sbjct: 92  AFYLDDSLDYLENIDRLL 109


>gi|67922611|ref|ZP_00516117.1| Ribosome-binding factor A [Crocosphaera watsonii WH 8501]
 gi|67855539|gb|EAM50792.1| Ribosome-binding factor A [Crocosphaera watsonii WH 8501]
          Length = 147

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K  N  NSRR  RV   ++  +  ++L +   DR+ S  ++S++ V +S DL+ A +++S
Sbjct: 15  KGANMANSRRVSRVSSLIKREISQMLLFDIKDDRVGS-GMVSVTNVYVSGDLQHAKIFVS 73

Query: 62  L-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +   + +    +  L  +  ++R  +   +R LR  PE+ F  D  ++   K+  L+
Sbjct: 74  IYGTEEAKIETMEGLKSSEGYVRKELAHRIR-LRRAPEVTFFEDHGIERGDKMLHLL 129


>gi|227529110|ref|ZP_03959159.1| ribosome-binding factor A [Lactobacillus vaginalis ATCC 49540]
 gi|227350954|gb|EEJ41245.1| ribosome-binding factor A [Lactobacillus vaginalis ATCC 49540]
          Length = 121

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 10/119 (8%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M NK  +  R A  +  EV   L+  + +   Q        ++I+ V ++ DL+ AT+Y 
Sbjct: 1   MPNKQYRVDRLAQEIQREVDDILLKRVRDPRVQG-------VTITGVDVTGDLQQATIYY 53

Query: 61  SLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S+  D + D  +V + L+     IR  +G  L N+   PE++F  D S+    +++ L+
Sbjct: 54  SILSDKASDMEKVQAGLDKATGLIRSELGARL-NIFKTPEIKFERDKSIAYGSRIDQLI 111


>gi|307299145|ref|ZP_07578946.1| ribosome-binding factor A [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914941|gb|EFN45327.1| ribosome-binding factor A [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 123

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 41  VISISEVCMSVDLRVATVYISL--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
           ++SI  V ++ D R ATV++SL  P D S  +++  LN +    R  I +++R L   PE
Sbjct: 34  MVSIVRVELTKDKRFATVFVSLMGP-DESKKKLVKRLNEDKGIFRTAIAKNIR-LFKAPE 91

Query: 99  LRFRYDTSLQSYWKLNALM 117
           +RF+ D  +++  ++  L+
Sbjct: 92  IRFKEDIGIEASLRVAQLL 110


>gi|257869196|ref|ZP_05648849.1| ribosome-binding factor A [Enterococcus gallinarum EG2]
 gi|257803360|gb|EEV32182.1| ribosome-binding factor A [Enterococcus gallinarum EG2]
          Length = 120

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 10/115 (8%)

Query: 5   NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
           N ++ R A  + +EV   L   + +   QD       ++I++V ++ DL+ AT++ S   
Sbjct: 3   NYRDRRVAQEILKEVNQILRKKVRDPRVQD-------VTITDVRVTGDLQQATIFYSTLS 55

Query: 65  DVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D++ +  +  + L      +R  +G++L +L  VPEL+F  D S+Q   K++ ++
Sbjct: 56  DLASEKQKAQAGLEKATGLVRRELGQAL-SLYKVPELQFELDESVQYGNKIDEMI 109


>gi|86131462|ref|ZP_01050060.1| Ribosome-binding factor A [Dokdonia donghaensis MED134]
 gi|85817907|gb|EAQ39075.1| Ribosome-binding factor A [Dokdonia donghaensis MED134]
          Length = 130

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
           +L N  +D      ++S+++V +  DL +A VY+S+  +     ++  +N     IR  I
Sbjct: 20  VLQNALRDSGQGGIIVSVTKVKVPTDLSIAKVYLSIFPNDKATEILKEVNQVKPIIRHNI 79

Query: 87  GRSLRN-LRYVPELRFRYDTSLQ 108
            +  R+ LR +PEL+F  D +L+
Sbjct: 80  SQRTRHQLRRMPELQFYIDDTLE 102


>gi|77359944|ref|YP_339519.1| ribosome-binding factor A, role in processing of 16S rRNA
           [Pseudoalteromonas haloplanktis TAC125]
 gi|123588866|sp|Q3IJ52|RBFA_PSEHT RecName: Full=Ribosome-binding factor A
 gi|76874855|emb|CAI86076.1| ribosome-binding factor A, role in processing of 16S rRNA
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 166

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 7/110 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
           R  RV ++++  +  VIL  E +D  +   ++++S V +S DL  A ++I++     D +
Sbjct: 6   RTDRVAQQIQKEI-AVILQREIKDPRLG--MVTVSAVEVSRDLSYAKIFITVFNTQDDNA 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +  + LN    +IR  +G+ +R  R +PEL+F  D SL    +++ L+
Sbjct: 63  AKQSANVLNEATGYIRSLLGKRIR-ARIMPELKFLVDNSLMEGMRISNLV 111


>gi|255535783|ref|YP_003096154.1| Ribosome-binding factor A [Flavobacteriaceae bacterium 3519-10]
 gi|255341979|gb|ACU08092.1| Ribosome-binding factor A [Flavobacteriaceae bacterium 3519-10]
          Length = 120

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
           ++++S+V ++ DL +A VY+S+        V+  +  N    R  IG+ + + +R +P++
Sbjct: 34  LVTVSDVKITADLSIAKVYLSIFPPAVRAAVMKEIEQNTSAYRNFIGQKMGKQVRIIPDV 93

Query: 100 RFRYDTSLQSYWKL 113
           +F  DT+L    K+
Sbjct: 94  KFYLDTTLDDVEKI 107


>gi|313206040|ref|YP_004045217.1| ribosome-binding factor a [Riemerella anatipestifer DSM 15868]
 gi|312445356|gb|ADQ81711.1| ribosome-binding factor A [Riemerella anatipestifer DSM 15868]
 gi|315022353|gb|EFT35381.1| Ribosome-binding factor A [Riemerella anatipestifer RA-YM]
 gi|325336519|gb|ADZ12793.1| ribosome-binding factor A [Riemerella anatipestifer RA-GD]
          Length = 119

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
           +IS+S+V ++ DL +A +Y+S+      + ++  +  N    R  IG  + + +R +P+L
Sbjct: 33  LISVSDVKVTADLGIAKIYLSIFPQNYREAIMKEIEANKSQYRHFIGNKMAKQVRVIPQL 92

Query: 100 RFRYDTSL 107
            F  DTSL
Sbjct: 93  SFYLDTSL 100


>gi|241760044|ref|ZP_04758142.1| ribosome-binding factor A [Neisseria flavescens SK114]
 gi|261364591|ref|ZP_05977474.1| ribosome-binding factor A [Neisseria mucosa ATCC 25996]
 gi|261381125|ref|ZP_05985698.1| ribosome-binding factor A [Neisseria subflava NJ9703]
 gi|319637963|ref|ZP_07992729.1| ribosome-binding factor A [Neisseria mucosa C102]
 gi|241319498|gb|EER55928.1| ribosome-binding factor A [Neisseria flavescens SK114]
 gi|284795927|gb|EFC51274.1| ribosome-binding factor A [Neisseria subflava NJ9703]
 gi|288567175|gb|EFC88735.1| ribosome-binding factor A [Neisseria mucosa ATCC 25996]
 gi|317401118|gb|EFV81773.1| ribosome-binding factor A [Neisseria mucosa C102]
          Length = 123

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           I+I+EV ++ D   ATV+ ++  D + D    AL      +R  + + ++  +  PEL F
Sbjct: 38  ITINEVEVTRDYSHATVFYTVLDDSTRDITEEALEHAKGHLRSELAKRIKLFK-TPELHF 96

Query: 102 RYDTSLQSYWKLNALM 117
           +YD SL+    +++L+
Sbjct: 97  KYDESLERGMSISSLI 112


>gi|298368699|ref|ZP_06980017.1| ribosome-binding factor A [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282702|gb|EFI24189.1| ribosome-binding factor A [Neisseria sp. oral taxon 014 str. F0314]
          Length = 123

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           I+I+EV ++ D   ATV+ ++  D + D    AL      +R  + + ++  +  PEL F
Sbjct: 38  ITINEVEVTRDYSHATVFYTVLDDSTRDITEEALEHAKGHLRSELAKRIKLFK-TPELHF 96

Query: 102 RYDTSLQSYWKLNALM 117
           +YD SL+    +++L+
Sbjct: 97  KYDESLERGMSISSLI 112


>gi|255066483|ref|ZP_05318338.1| ribosome-binding factor A [Neisseria sicca ATCC 29256]
 gi|255049363|gb|EET44827.1| ribosome-binding factor A [Neisseria sicca ATCC 29256]
          Length = 123

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           I+I+EV ++ D   ATV+ ++  D + D    AL      +R  + + ++  +  PEL F
Sbjct: 38  ITINEVEVTRDYSHATVFYTVLDDSTRDITEEALEHAKGHLRSELAKRIKLFK-TPELHF 96

Query: 102 RYDTSLQSYWKLNALM 117
           +YD SL+    +++L+
Sbjct: 97  KYDESLERGMSISSLI 112


>gi|29375844|ref|NP_814998.1| ribosome-binding factor A [Enterococcus faecalis V583]
 gi|227518535|ref|ZP_03948584.1| ribosome-binding factor A [Enterococcus faecalis TX0104]
 gi|227553061|ref|ZP_03983110.1| ribosome-binding factor A [Enterococcus faecalis HH22]
 gi|229546048|ref|ZP_04434773.1| ribosome-binding factor A [Enterococcus faecalis TX1322]
 gi|255976053|ref|ZP_05426639.1| ribosome-binding factor A [Enterococcus faecalis T2]
 gi|256618854|ref|ZP_05475700.1| ribosome-binding factor A [Enterococcus faecalis ATCC 4200]
 gi|256762272|ref|ZP_05502852.1| ribosome-binding factor A [Enterococcus faecalis T3]
 gi|256852917|ref|ZP_05558287.1| ribosome-binding factor A [Enterococcus faecalis T8]
 gi|256958763|ref|ZP_05562934.1| ribosome-binding factor A [Enterococcus faecalis DS5]
 gi|256962131|ref|ZP_05566302.1| ribosome-binding factor A [Enterococcus faecalis Merz96]
 gi|256965330|ref|ZP_05569501.1| ribosome-binding factor A [Enterococcus faecalis HIP11704]
 gi|257078792|ref|ZP_05573153.1| ribosome-binding factor A [Enterococcus faecalis JH1]
 gi|257082764|ref|ZP_05577125.1| ribosome-binding factor A [Enterococcus faecalis E1Sol]
 gi|257085465|ref|ZP_05579826.1| ribosome-binding factor A [Enterococcus faecalis Fly1]
 gi|257086622|ref|ZP_05580983.1| ribosome-binding factor A [Enterococcus faecalis D6]
 gi|257089679|ref|ZP_05584040.1| ribosome-binding factor A [Enterococcus faecalis CH188]
 gi|257415893|ref|ZP_05592887.1| ribosome-binding factor A [Enterococcus faecalis AR01/DG]
 gi|257419095|ref|ZP_05596089.1| ribosome-binding factor A [Enterococcus faecalis T11]
 gi|293383156|ref|ZP_06629073.1| ribosome-binding factor A [Enterococcus faecalis R712]
 gi|293387690|ref|ZP_06632235.1| ribosome-binding factor A [Enterococcus faecalis S613]
 gi|294780125|ref|ZP_06745498.1| ribosome-binding factor A [Enterococcus faecalis PC1.1]
 gi|300860107|ref|ZP_07106195.1| ribosome-binding factor A [Enterococcus faecalis TUSoD Ef11]
 gi|307268544|ref|ZP_07549917.1| ribosome-binding factor A [Enterococcus faecalis TX4248]
 gi|307273437|ref|ZP_07554682.1| ribosome-binding factor A [Enterococcus faecalis TX0855]
 gi|307277600|ref|ZP_07558692.1| ribosome-binding factor A [Enterococcus faecalis TX2134]
 gi|307279090|ref|ZP_07560148.1| ribosome-binding factor A [Enterococcus faecalis TX0860]
 gi|307291256|ref|ZP_07571140.1| ribosome-binding factor A [Enterococcus faecalis TX0411]
 gi|312899336|ref|ZP_07758669.1| ribosome-binding factor A [Enterococcus faecalis TX0470]
 gi|312904025|ref|ZP_07763193.1| ribosome-binding factor A [Enterococcus faecalis TX0635]
 gi|312907255|ref|ZP_07766246.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 512]
 gi|312909873|ref|ZP_07768721.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 516]
 gi|312952272|ref|ZP_07771147.1| ribosome-binding factor A [Enterococcus faecalis TX0102]
 gi|34098453|sp|Q835U7|RBFA_ENTFA RecName: Full=Ribosome-binding factor A
 gi|29343306|gb|AAO81068.1| ribosome-binding factor A [Enterococcus faecalis V583]
 gi|227074017|gb|EEI11980.1| ribosome-binding factor A [Enterococcus faecalis TX0104]
 gi|227177804|gb|EEI58776.1| ribosome-binding factor A [Enterococcus faecalis HH22]
 gi|229308821|gb|EEN74808.1| ribosome-binding factor A [Enterococcus faecalis TX1322]
 gi|255968925|gb|EET99547.1| ribosome-binding factor A [Enterococcus faecalis T2]
 gi|256598381|gb|EEU17557.1| ribosome-binding factor A [Enterococcus faecalis ATCC 4200]
 gi|256683523|gb|EEU23218.1| ribosome-binding factor A [Enterococcus faecalis T3]
 gi|256711376|gb|EEU26414.1| ribosome-binding factor A [Enterococcus faecalis T8]
 gi|256949259|gb|EEU65891.1| ribosome-binding factor A [Enterococcus faecalis DS5]
 gi|256952627|gb|EEU69259.1| ribosome-binding factor A [Enterococcus faecalis Merz96]
 gi|256955826|gb|EEU72458.1| ribosome-binding factor A [Enterococcus faecalis HIP11704]
 gi|256986822|gb|EEU74124.1| ribosome-binding factor A [Enterococcus faecalis JH1]
 gi|256990794|gb|EEU78096.1| ribosome-binding factor A [Enterococcus faecalis E1Sol]
 gi|256993495|gb|EEU80797.1| ribosome-binding factor A [Enterococcus faecalis Fly1]
 gi|256994652|gb|EEU81954.1| ribosome-binding factor A [Enterococcus faecalis D6]
 gi|256998491|gb|EEU85011.1| ribosome-binding factor A [Enterococcus faecalis CH188]
 gi|257157721|gb|EEU87681.1| ribosome-binding factor A [Enterococcus faecalis ARO1/DG]
 gi|257160923|gb|EEU90883.1| ribosome-binding factor A [Enterococcus faecalis T11]
 gi|291079495|gb|EFE16859.1| ribosome-binding factor A [Enterococcus faecalis R712]
 gi|291082879|gb|EFE19842.1| ribosome-binding factor A [Enterococcus faecalis S613]
 gi|294452800|gb|EFG21229.1| ribosome-binding factor A [Enterococcus faecalis PC1.1]
 gi|295112814|emb|CBL31451.1| ribosome-binding factor A [Enterococcus sp. 7L76]
 gi|300850925|gb|EFK78674.1| ribosome-binding factor A [Enterococcus faecalis TUSoD Ef11]
 gi|306497487|gb|EFM67020.1| ribosome-binding factor A [Enterococcus faecalis TX0411]
 gi|306504215|gb|EFM73427.1| ribosome-binding factor A [Enterococcus faecalis TX0860]
 gi|306505865|gb|EFM75043.1| ribosome-binding factor A [Enterococcus faecalis TX2134]
 gi|306509964|gb|EFM78989.1| ribosome-binding factor A [Enterococcus faecalis TX0855]
 gi|306515140|gb|EFM83682.1| ribosome-binding factor A [Enterococcus faecalis TX4248]
 gi|310626283|gb|EFQ09566.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 512]
 gi|310629656|gb|EFQ12939.1| ribosome-binding factor A [Enterococcus faecalis TX0102]
 gi|310632501|gb|EFQ15784.1| ribosome-binding factor A [Enterococcus faecalis TX0635]
 gi|311289831|gb|EFQ68387.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 516]
 gi|311293487|gb|EFQ72043.1| ribosome-binding factor A [Enterococcus faecalis TX0470]
 gi|315027489|gb|EFT39421.1| ribosome-binding factor A [Enterococcus faecalis TX2137]
 gi|315030932|gb|EFT42864.1| ribosome-binding factor A [Enterococcus faecalis TX4000]
 gi|315034088|gb|EFT46020.1| ribosome-binding factor A [Enterococcus faecalis TX0017]
 gi|315036756|gb|EFT48688.1| ribosome-binding factor A [Enterococcus faecalis TX0027]
 gi|315145582|gb|EFT89598.1| ribosome-binding factor A [Enterococcus faecalis TX2141]
 gi|315147755|gb|EFT91771.1| ribosome-binding factor A [Enterococcus faecalis TX4244]
 gi|315151456|gb|EFT95472.1| ribosome-binding factor A [Enterococcus faecalis TX0012]
 gi|315153235|gb|EFT97251.1| ribosome-binding factor A [Enterococcus faecalis TX0031]
 gi|315160332|gb|EFU04349.1| ribosome-binding factor A [Enterococcus faecalis TX0645]
 gi|315166755|gb|EFU10772.1| ribosome-binding factor A [Enterococcus faecalis TX1341]
 gi|315169954|gb|EFU13971.1| ribosome-binding factor A [Enterococcus faecalis TX1342]
 gi|315174362|gb|EFU18379.1| ribosome-binding factor A [Enterococcus faecalis TX1346]
 gi|315575670|gb|EFU87861.1| ribosome-binding factor A [Enterococcus faecalis TX0309B]
 gi|315578372|gb|EFU90563.1| ribosome-binding factor A [Enterococcus faecalis TX0630]
 gi|315579886|gb|EFU92077.1| ribosome-binding factor A [Enterococcus faecalis TX0309A]
 gi|323480506|gb|ADX79945.1| ribosome-binding factor A [Enterococcus faecalis 62]
 gi|327534897|gb|AEA93731.1| ribosome-binding factor A [Enterococcus faecalis OG1RF]
          Length = 116

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 6/109 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R  RVG+E+   +   ILN   +D  +    I+I++V ++ DL+ AT+Y SL  D++ + 
Sbjct: 5   RDRRVGQEIMREVND-ILNKRIRDPRVQ--GITITDVRVTGDLQQATIYYSLLSDLASEQ 61

Query: 70  -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +    L+     IR  +G+ L  L   PEL F  D S+Q    ++ L+
Sbjct: 62  QKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELI 109


>gi|319937391|ref|ZP_08011798.1| ribosome-binding factor A [Coprobacillus sp. 29_1]
 gi|319807757|gb|EFW04350.1| ribosome-binding factor A [Coprobacillus sp. 29_1]
          Length = 114

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 24  MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIR 83
           +  IL  E +D  I     +I+ V  + DL ++ +Y+S  L+ +  + + AL  +  FIR
Sbjct: 16  LSTILQTEVKDPSIG--FCTITGVDTTADLSISKIYVSF-LNKNTKKSMEALERSKGFIR 72

Query: 84  GRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + + L  +R  PEL F  DTSL+   K++ ++
Sbjct: 73  SLLAKRL-TIRKCPELHFVLDTSLEYGNKIDNII 105


>gi|268316869|ref|YP_003290588.1| ribosome-binding factor A [Rhodothermus marinus DSM 4252]
 gi|262334403|gb|ACY48200.1| ribosome-binding factor A [Rhodothermus marinus DSM 4252]
          Length = 126

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           +S R  RVG  ++  L   IL  EF D+L    + ++++V  + DL +A VY+S+    +
Sbjct: 3   SSIRVQRVGSLLKRELAD-ILQFEFGDQLPP--MTTVTDVQPTRDLSIAKVYVSI--YGT 57

Query: 68  PDRVISA---LNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMC 118
           P++  +A   L      IR  + + +R  LR++PELRF  D +L+   ++  L+ 
Sbjct: 58  PEQKRAAFRRLQELTPQIRAALAQRIRYQLRFMPELRFVLDETLERAQRVEELLA 112


>gi|323692924|ref|ZP_08107146.1| ribosome-binding factor A [Clostridium symbiosum WAL-14673]
 gi|323503007|gb|EGB18847.1| ribosome-binding factor A [Clostridium symbiosum WAL-14673]
          Length = 139

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+  EV+  L  +I + E +D  I   + ++  V ++ DL+    YIS L  +
Sbjct: 3   KNSIKNTRINSEVQKELSEII-SRELKDPRI-HPMTTVVSVEVTPDLKFCKAYISVLGSE 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            +    +  L     FIR ++ + + NLR  PEL F  D S++
Sbjct: 61  EAGKDTVQGLKSAASFIRTQLAKRI-NLRNTPELSFILDQSIE 102


>gi|323485576|ref|ZP_08090920.1| hypothetical protein HMPREF9474_02671 [Clostridium symbiosum
           WAL-14163]
 gi|323401094|gb|EGA93448.1| hypothetical protein HMPREF9474_02671 [Clostridium symbiosum
           WAL-14163]
          Length = 139

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+  EV+  L  +I + E +D  I   + ++  V ++ DL+    YIS L  +
Sbjct: 3   KNSIKNTRINSEVQKELSEII-SRELKDPRI-HPMTTVVSVEVTPDLKFCKAYISVLGSE 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            +    +  L     FIR ++ + + NLR  PEL F  D S++
Sbjct: 61  EAGKDTVQGLKSAASFIRTQLAKRI-NLRNTPELSFILDQSIE 102


>gi|71908069|ref|YP_285656.1| ribosome-binding factor A [Dechloromonas aromatica RCB]
 gi|123627144|sp|Q47D95|RBFA_DECAR RecName: Full=Ribosome-binding factor A
 gi|71847690|gb|AAZ47186.1| ribosome-binding factor A [Dechloromonas aromatica RCB]
          Length = 123

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K  +R+ RV E+VR  L  +I   E +D  +   +IS++ V ++ D   A V+ +     
Sbjct: 4   KGFQRSDRVAEQVRRDLADLI-RTELKDPRVG--MISLTAVELTPDYAHAKVFFATLNSE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             + V   L     F+R  +G+ + ++  +PEL F YD+S++    L+ L+
Sbjct: 61  HLEEVERGLKRAAGFLRRELGKRI-HIHTLPELHFVYDSSIERGASLSLLI 110


>gi|303256977|ref|ZP_07342991.1| ribosome-binding factor A [Burkholderiales bacterium 1_1_47]
 gi|302860468|gb|EFL83545.1| ribosome-binding factor A [Burkholderiales bacterium 1_1_47]
          Length = 124

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           P    RA R+ ++++  +  +I       +     +I+++   ++ D   AT+Y +  + 
Sbjct: 4   PTKPGRANRIADQIQRDVAELIQKEVSNPKT---GLITLTGCEITPDYAHATIYFT-SIG 59

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +P+    ALN     +  RI + L+ +  VP+L F YD S++  ++++ L+
Sbjct: 60  STPEEATEALNSAAPMLHSRIFKLLK-IHTVPQLHFVYDKSVERGFEMDQLI 110


>gi|313199848|ref|YP_004038506.1| ribosome-binding factor a [Methylovorus sp. MP688]
 gi|312439164|gb|ADQ83270.1| ribosome-binding factor A [Methylovorus sp. MP688]
          Length = 123

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R+ RV E+++  L   +L  E +D  +   +++++EV +S DL  A V+ S     
Sbjct: 3   KEFSRSDRVAEQMQRELAD-LLQFEVKDPRVG--MVTVTEVEVSGDLAHAKVFYSAEKG- 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +P+ +   L     F+R ++ + L  LR VP+L F YD S+ +  K++ L+
Sbjct: 59  TPE-LQKGLEKTAGFLRSQLAKRLL-LRTVPQLHFVYDASIDNGMKISRLI 107


>gi|332975272|gb|EGK12172.1| ribosome-binding factor A [Kingella kingae ATCC 23330]
          Length = 123

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVIS--ALNCNIKFIRGRIGRSLRNLRYVPEL 99
           I+I++V ++ D   ATVY ++   +S DR  S  AL     F+R  + R +   R  PEL
Sbjct: 39  ITINDVEVTRDYSHATVYYTV---LSGDREASLQALEHAKGFLRSELSRRITVFR-TPEL 94

Query: 100 RFRYDTSLQSYWKLNALM 117
            F YD SL+   +L+ L+
Sbjct: 95  HFEYDESLERGVQLSNLI 112


>gi|331082954|ref|ZP_08332074.1| ribosome-binding factor A [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330399949|gb|EGG79607.1| ribosome-binding factor A [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 128

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  RV  EV+  L  +I       R+    + S++ V ++ DL+    YIS +  +
Sbjct: 3   KNSIKNTRVNAEVQHELANLIREGIKDPRI--HPMTSVTAVEVAPDLKTCRAYISVMGNE 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            + +  I+ L     +IR ++ +++ NLR  PE+RF  D S++
Sbjct: 61  EAKNNTIAGLKSAEGYIRRQLAKNI-NLRNTPEIRFILDESIE 102


>gi|218258188|ref|ZP_03474590.1| hypothetical protein PRABACTJOHN_00244 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225683|gb|EEC98333.1| hypothetical protein PRABACTJOHN_00244 [Parabacteroides johnsonii
           DSM 18315]
          Length = 111

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPEL 99
           +IS+S V +S DL VA  Y+S+        ++  +  N K IR  +G+ +R  +R +PEL
Sbjct: 32  LISVSVVRVSPDLSVARAYLSIFPSEKSKEMLENIRANTKAIRFDLGQRIRQQVRKIPEL 91

Query: 100 RFRYDTSLQSYWKLNALM 117
            F  D SL     ++ L+
Sbjct: 92  TFFIDDSLDYIENIDNLL 109


>gi|325266651|ref|ZP_08133328.1| ribosome-binding factor A [Kingella denitrificans ATCC 33394]
 gi|324982094|gb|EGC17729.1| ribosome-binding factor A [Kingella denitrificans ATCC 33394]
          Length = 123

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPEL 99
           I+I++V +S D   ATVY ++   ++ DR  SA  L     F+R  + R +   R  PEL
Sbjct: 39  ITINDVEVSRDYSHATVYYTV---LNGDRAASAQALEKAKGFLRSELSRRITVFR-TPEL 94

Query: 100 RFRYDTSLQSYWKLNALM 117
            F YD SL+    L+ L+
Sbjct: 95  HFEYDESLERGVNLSQLI 112


>gi|254556870|ref|YP_003063287.1| ribosome-binding factor A [Lactobacillus plantarum JDM1]
 gi|300768183|ref|ZP_07078088.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180811|ref|YP_003924939.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254045797|gb|ACT62590.1| ribosome-binding factor A [Lactobacillus plantarum JDM1]
 gi|300494247|gb|EFK29410.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046302|gb|ADN98845.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 117

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++I+ V ++ DL+ AT+Y S+  D + D  +  + L      IR  +G  L ++   PEL
Sbjct: 34  VTITGVTVTGDLQQATIYYSILSDKASDGEKTAAGLTKATGLIRSELGSRL-SIYKTPEL 92

Query: 100 RFRYDTSLQSYWKLNALM 117
            F  D S+Q   +++ L+
Sbjct: 93  TFERDNSVQYGSRIDELI 110


>gi|299469794|emb|CBN76648.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 269

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC--NIKFIRGRIGRSLRNLRYVPEL 99
           I++ +V MS DLR A V+IS+  DV   R   A  C  N K IR  +   L+ ++ VPEL
Sbjct: 123 IAVVDVDMSPDLRSAKVFISVYGDVLEKREAYAW-CVKNTKAIRMALCAELKGMKRVPEL 181

Query: 100 RFRYDTSLQSYWKLNALM 117
            F+ DT + +   L AL+
Sbjct: 182 FFK-DTDISAAVDLMALI 198


>gi|256847052|ref|ZP_05552498.1| ribosome-binding factor A [Lactobacillus coleohominis 101-4-CHN]
 gi|256715716|gb|EEU30691.1| ribosome-binding factor A [Lactobacillus coleohominis 101-4-CHN]
          Length = 120

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M NK  +  R A  +  EV   L+  + +   QD       I+++ V ++ DL+ AT+Y 
Sbjct: 1   MPNKRYRPERLAQEIQREVDDILLKRVRDPRVQD-------ITVTGVDVTGDLQQATIYY 53

Query: 61  SLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           SL  D + D  +  + L+     IR  +G  L N+   P ++F  D S+    +++ L+
Sbjct: 54  SLLSDKASDGEKAQAGLDKATGLIRKELGARL-NIFKTPAIKFERDPSIAYGNRIDELL 111


>gi|319787426|ref|YP_004146901.1| ribosome-binding factor A [Pseudoxanthomonas suwonensis 11-1]
 gi|317465938|gb|ADV27670.1| ribosome-binding factor A [Pseudoxanthomonas suwonensis 11-1]
          Length = 120

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R  RV  ++R  L  ++     +  L S   +S+S+V ++ DL  A V+++  +  
Sbjct: 4   KSFHRTDRVSAQLRRELGTLVHEAVREHGLPS---VSVSDVEVTRDLAHAKVFVTALMPE 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                + AL      +R  + R ++ +R+VPEL F YD S+    ++  L+
Sbjct: 61  RSTEAVKALKELAYQLRMELARRVK-MRHVPELHFHYDDSVDRGERIETLL 110


>gi|123967667|ref|YP_001008525.1| ribosome-binding factor A [Prochlorococcus marinus str. AS9601]
 gi|166219390|sp|A2BNQ7|RBFA_PROMS RecName: Full=Ribosome-binding factor A
 gi|123197777|gb|ABM69418.1| Ribosome-binding factor A [Prochlorococcus marinus str. AS9601]
          Length = 130

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 17  EEVRSAL---MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVI 72
           E+V S L   + +IL N+ ++ LI    ++IS++ +S DL+   +YI S   +     ++
Sbjct: 8   EKVSSLLKKEITLILQNDLENDLIRDHFVNISKIDLSGDLQHCKIYITSTAQEKVRTEIV 67

Query: 73  SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
             LN     IR  +G+ +  +R VPE+ F+ D  L
Sbjct: 68  ENLNTAKSSIRHSLGKRIE-MRRVPEIIFKDDVVL 101


>gi|254516616|ref|ZP_05128675.1| ribosome-binding factor A [gamma proteobacterium NOR5-3]
 gi|219675039|gb|EED31406.1| ribosome-binding factor A [gamma proteobacterium NOR5-3]
          Length = 157

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PL 64
            K   R  RVG+ +R  L  +I   E +D  +   ++SI+ V +S D+  A V+ +L   
Sbjct: 2   AKEFSRTERVGDYLRRELALII-QREVRDPRLG--MVSITAVDVSRDISHARVHFTLLGC 58

Query: 65  DVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           D + +   S   LN    F+R  + R   ++R VP+LRF +D+S+     L AL+
Sbjct: 59  DTAEEAKPSTDVLNKAAGFLRSALARDA-SMRSVPKLRFVFDSSIGRGRDLEALI 112


>gi|153814917|ref|ZP_01967585.1| hypothetical protein RUMTOR_01132 [Ruminococcus torques ATCC 27756]
 gi|317500429|ref|ZP_07958653.1| ribosome-binding factor A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089564|ref|ZP_08338463.1| ribosome-binding factor A [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847948|gb|EDK24866.1| hypothetical protein RUMTOR_01132 [Ruminococcus torques ATCC 27756]
 gi|316898184|gb|EFV20231.1| ribosome-binding factor A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404932|gb|EGG84470.1| ribosome-binding factor A [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 127

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  RV  EV+  L   IL    +D  +S  + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRVNAEVQRELSN-ILRGGIKDPRVS-PMTSVVAVEVAPDLKTCKAYISVLGDE 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              +  I  L     FIR  + R++ N+R  PE++F  D S++
Sbjct: 61  KAQQDTIKGLQSAEGFIRRELARTI-NMRNTPEIKFIVDQSIE 102


>gi|160898432|ref|YP_001564014.1| ribosome-binding factor A [Delftia acidovorans SPH-1]
 gi|238687223|sp|A9C1Z3|RBFA_DELAS RecName: Full=Ribosome-binding factor A
 gi|160364016|gb|ABX35629.1| ribosome-binding factor A [Delftia acidovorans SPH-1]
          Length = 123

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M  +      R+ +V ++++  L  +I   E +D  +   ++++  V ++ D   A VY 
Sbjct: 1   MATRKSAAPNRSFKVSDQIQRDLAELIAR-ELKDPRVG--MVTLQSVEVTPDYAHAKVYF 57

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           SL L   P     ALN    F+R  + + L ++  VP L F YD + +    +NAL+ 
Sbjct: 58  SL-LVGDPQATQEALNQAAGFLRNGLFKRL-HIHTVPTLHFIYDRTSERAADMNALIA 113


>gi|330999165|ref|ZP_08322884.1| ribosome-binding factor A [Parasutterella excrementihominis YIT
           11859]
 gi|329575365|gb|EGG56909.1| ribosome-binding factor A [Parasutterella excrementihominis YIT
           11859]
          Length = 124

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           P    RA R+ ++++  +  +I       +     +++++   ++ D   AT+Y +  + 
Sbjct: 4   PTKPGRANRIADQIQRDVAELIQKEVSNPKT---GLVTLTGCEITPDYAHATIYFT-SIG 59

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +P+    ALN     +  RI + L+ +  VP+L F YD S++  ++++ L+
Sbjct: 60  STPEEATEALNSAAPMLHSRIFKLLK-IHTVPQLHFVYDKSVERGFEMDQLI 110


>gi|163848558|ref|YP_001636602.1| ribosome-binding factor A [Chloroflexus aurantiacus J-10-fl]
 gi|222526493|ref|YP_002570964.1| ribosome-binding factor A [Chloroflexus sp. Y-400-fl]
 gi|182676538|sp|A9WGP7|RBFA_CHLAA RecName: Full=Ribosome-binding factor A
 gi|254789741|sp|B9LBJ3|RBFA_CHLSY RecName: Full=Ribosome-binding factor A
 gi|163669847|gb|ABY36213.1| ribosome-binding factor A [Chloroflexus aurantiacus J-10-fl]
 gi|222450372|gb|ACM54638.1| ribosome-binding factor A [Chloroflexus sp. Y-400-fl]
          Length = 127

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 27  ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR---VISALNCNIKFIR 83
           ++  E +D  +     +++ V +S DL+ A V IS+    SP+     ++AL     F+R
Sbjct: 20  VIQKELKDPRVG--FATVTGVEVSADLQHAKVRISVM--GSPEEREAAMAALQRARGFLR 75

Query: 84  GRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
            R+   +  +R+VPEL    DTSL     ++
Sbjct: 76  KRVAEEMSYMRFVPELHLIQDTSLDYTMHMD 106


>gi|88705686|ref|ZP_01103396.1| Ribosome-binding factor A [Congregibacter litoralis KT71]
 gi|88700199|gb|EAQ97308.1| Ribosome-binding factor A [Congregibacter litoralis KT71]
          Length = 145

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R  RVG+ +R  L  +I   E +D  +   ++SI+ V +S D+  A V+ +L    
Sbjct: 3   KEFSRTERVGDYLRRELALII-QREVRDPRLG--MVSITAVDVSRDISHARVHFTLLGSD 59

Query: 67  SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +        LN    F+R  + R   ++R VP+LRF +D+S+     L AL+
Sbjct: 60  TAEEAKPCTDVLNNAAGFLRSALARDA-SMRSVPKLRFVFDSSVGRGRDLEALI 112


>gi|32473743|ref|NP_866737.1| ribosome-binding factor A [Rhodopirellula baltica SH 1]
 gi|39931771|sp|Q7URR1|RBFA_RHOBA RecName: Full=Ribosome-binding factor A
 gi|32444279|emb|CAD74277.1| probable ribosome-binding factor A [Rhodopirellula baltica SH 1]
 gi|327542472|gb|EGF28951.1| ribosome-binding factor A [Rhodopirellula baltica WH47]
          Length = 137

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
           +SRR L+  E +R  +   I+  E +D  + RDV  I  V +S D+R A V +S+  D +
Sbjct: 2   SSRRLLKAAEAIREVVANAIVT-EVRDPRV-RDVTVIG-VEVSPDMREAKVKVSVMGDET 58

Query: 68  PDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              + +  L  +  F++ +I   + + RY P+LRF  D   ++   ++ ++ 
Sbjct: 59  QKNLSLRGLQNSAGFLQSKIANRM-DTRYTPKLRFEVDRGQENAMTVSEILA 109


>gi|53804605|ref|YP_113776.1| ribosome-binding factor A [Methylococcus capsulatus str. Bath]
 gi|61214821|sp|Q609C1|RBFA_METCA RecName: Full=Ribosome-binding factor A
 gi|53758366|gb|AAU92657.1| ribosome-binding factor A [Methylococcus capsulatus str. Bath]
          Length = 119

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 41  VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++++S+V +S DL VA V+++ L   +     +  L      +R  +GR +R +R +PE+
Sbjct: 34  MVTVSDVDVSRDLAVAKVFVTFLGARLETRAAVKRLGEFAPQLRQVLGRRMR-MRIIPEI 92

Query: 100 RFRYDTSLQSYWKLNALM 117
           RF YD SL+    ++ ++
Sbjct: 93  RFAYDDSLERGLHMDEVL 110


>gi|262037350|ref|ZP_06010815.1| ribosome-binding factor A [Leptotrichia goodfellowii F0264]
 gi|261748607|gb|EEY35981.1| ribosome-binding factor A [Leptotrichia goodfellowii F0264]
          Length = 120

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---LPL 64
           N RR   + +E+ S ++ + L  E ++  I ++++SI +V ++ D R   +  S   L  
Sbjct: 2   NDRRKKGLEKEI-SRIVGITLLTEIKNEKI-KNLVSIHKVELTKDGRYLDLTFSILDLKN 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +V+ ++++  L     F R  IG  L ++R+VPE+R   D S++   K+++++
Sbjct: 60  NVNKEKIVEDLEKLKGFFRKTIGSQL-SVRFVPEIRIHIDDSVEYGVKISSIL 111


>gi|253997784|ref|YP_003049847.1| ribosome-binding factor A [Methylovorus sp. SIP3-4]
 gi|253984463|gb|ACT49320.1| ribosome-binding factor A [Methylovorus sp. SIP3-4]
          Length = 123

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 6/111 (5%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K   R+ R+ E+++  L   +L  E +D  +   +++++EV +S DL  A V+ S     
Sbjct: 3   KEFSRSDRIAEQMQRELAD-LLQFEVKDPRVG--MVTVTEVEVSGDLAHAKVFYSAEKG- 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +P+ +   L     F+R ++ + L  LR VP+L F YD S+ +  K++ L+
Sbjct: 59  TPE-LQKGLEKTAGFLRSQLAKRLL-LRTVPQLHFVYDASIDNGMKISRLI 107


>gi|126695467|ref|YP_001090353.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9301]
 gi|166219386|sp|A3PAH7|RBFA_PROM0 RecName: Full=Ribosome-binding factor A
 gi|126542510|gb|ABO16752.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9301]
          Length = 130

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 24  MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNIKFI 82
           + +IL N+ ++ LI    ++IS++ +S DL+   +YI S   +     ++  LN     I
Sbjct: 18  ITLILQNDLENDLIRDHFVNISKIDLSGDLQHCKIYITSTAEEKVRKEIVENLNTAKSSI 77

Query: 83  RGRIGRSLRNLRYVPELRFRYDTSL 107
           R  +G+ +  +R VPE+ F+ D  L
Sbjct: 78  RHSLGKRIE-MRRVPEIIFKDDVVL 101


>gi|154249099|ref|YP_001409924.1| ribosome-binding factor A [Fervidobacterium nodosum Rt17-B1]
 gi|171769324|sp|A7HK34|RBFA_FERNB RecName: Full=Ribosome-binding factor A
 gi|154153035|gb|ABS60267.1| ribosome-binding factor A [Fervidobacterium nodosum Rt17-B1]
          Length = 125

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 18  EVRSALMWVILNNEFQDRLIS--RDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISA 74
           E+R  L   ++  E +D  I   + +I+IS V +S D R A VY+S+  D +  + V++ 
Sbjct: 13  EIRKVLSEALM--EMKDPNIDPMKSLITISRVEVSKDKRYADVYVSVLGDEAKRKDVVNY 70

Query: 75  LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                 + R  + +++R +   PELRF+ D  +++  ++  L+
Sbjct: 71  FEQKKGYFRTYVAKNIR-MYTAPELRFKEDKGIEATVRIGQLL 112


>gi|313885308|ref|ZP_07819059.1| ribosome-binding factor A [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619414|gb|EFR30852.1| ribosome-binding factor A [Eremococcus coleocola ACS-139-V-Col8]
          Length = 116

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDR--VISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++I++V ++ DL+ AT+Y S   D++  R    + L      +R  +G+ L+ +   PE+
Sbjct: 33  VTITDVDLTGDLQHATIYYSTLSDLAGQRQKQQAGLEAVTGKVRSELGKRLK-IYKTPEI 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           RF  D S+    K+++L+
Sbjct: 92  RFERDASVDYGNKIDSLL 109


>gi|270285158|ref|ZP_06194552.1| ribosome-binding factor A [Chlamydia muridarum Nigg]
 gi|270289178|ref|ZP_06195480.1| ribosome-binding factor A [Chlamydia muridarum Weiss]
 gi|301336553|ref|ZP_07224755.1| ribosome-binding factor A [Chlamydia muridarum MopnTet14]
          Length = 121

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 19  VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNC 77
           +R ++  VIL +    ++ +R  I+I+ V +S DL+ A VY+S +P + S +  ++AL  
Sbjct: 2   LRESIAKVILKDVKHPKISNR-WITITRVSLSRDLQSARVYVSIMPHENSQEETLAALKA 60

Query: 78  NIKFIRGRIGRSLRNLRYVPELRF 101
           +  FI  +  + +  L+Y P+L F
Sbjct: 61  SAGFIACQASKDVV-LKYFPDLNF 83


>gi|225374834|ref|ZP_03752055.1| hypothetical protein ROSEINA2194_00455 [Roseburia inulinivorans DSM
           16841]
 gi|225213295|gb|EEG95649.1| hypothetical protein ROSEINA2194_00455 [Roseburia inulinivorans DSM
           16841]
          Length = 124

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+  EV+  L  +I   E +D  I+  + S+  V ++ DL+    YIS L  +
Sbjct: 3   KNSIKNTRINGEVQKELSNII-RGEIKDPRINP-LTSVVAVEVAPDLKTCKAYISVLGDE 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            S    I  L     +IR  + +S+ NLR  P++ F  D S++   K++ ++
Sbjct: 61  KSQQDTIKGLKSAEGYIRTMLAKSI-NLRNTPQITFILDQSIEYGVKMSKMI 111


>gi|315126159|ref|YP_004068162.1| ribosome-binding factor A, role in processing of 16S rRNA
           [Pseudoalteromonas sp. SM9913]
 gi|315014673|gb|ADT68011.1| ribosome-binding factor A, role in processing of 16S rRNA
           [Pseudoalteromonas sp. SM9913]
          Length = 135

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
           R  RV ++++  +  VIL  E +D  +   ++++S V +S DL  A V+I++     + +
Sbjct: 6   RTDRVAQQIQKEI-AVILQREIKDPRLG--MVTVSAVEVSRDLSYAKVFITVFNTEDENA 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +    LN    +IR  +G+ +R  R +PEL+F  D SL    +++ L+
Sbjct: 63  AKQSAKVLNEATGYIRSLLGKRIR-ARIMPELKFVVDNSLMEGMRISNLV 111


>gi|330813315|ref|YP_004357554.1| translation initiation factor 2 [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486410|gb|AEA80815.1| translation initiation factor 2 [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 125

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           ++R L+ GE ++  +  + + ++     IS   I+I+EV +S DLR A VY  +PL    
Sbjct: 11  TQRQLKAGENLKKIIANIFIKDQIVLPDISTRNITITEVRVSPDLRHAIVYF-IPLSGDK 69

Query: 69  DRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
             +    LN     ++ R+ +S  + +++P+LRF  D S 
Sbjct: 70  SEIAFKTLNQFSYEVKKRV-KSSWSAKFLPDLRFVLDKSF 108


>gi|284044676|ref|YP_003395016.1| ribosome-binding factor A [Conexibacter woesei DSM 14684]
 gi|283948897|gb|ADB51641.1| ribosome-binding factor A [Conexibacter woesei DSM 14684]
          Length = 121

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DRVI 72
           RV E VR+ L   I   + +D  +    ++++ V  S DLR A VY+S+  D       +
Sbjct: 3   RVDEAVRAVLSDAI-TQDLKDPRVG--FVTVTAVRTSSDLRHARVYVSVLGDEETRAECL 59

Query: 73  SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + L     +++  + R +R ++Y PE+ F YD S+    ++  ++
Sbjct: 60  AGLRSATGYLQRLVAREVR-MKYTPEIVFAYDDSIDRGMRITEIL 103


>gi|229550238|ref|ZP_04438963.1| ribosome-binding factor A [Enterococcus faecalis ATCC 29200]
 gi|255973014|ref|ZP_05423600.1| ribosome-binding factor A [Enterococcus faecalis T1]
 gi|257422837|ref|ZP_05599827.1| ribosome-binding factor A [Enterococcus faecalis X98]
 gi|229304676|gb|EEN70672.1| ribosome-binding factor A [Enterococcus faecalis ATCC 29200]
 gi|255964032|gb|EET96508.1| ribosome-binding factor A [Enterococcus faecalis T1]
 gi|257164661|gb|EEU94621.1| ribosome-binding factor A [Enterococcus faecalis X98]
 gi|315155986|gb|EFU00003.1| ribosome-binding factor A [Enterococcus faecalis TX0043]
 gi|315157842|gb|EFU01859.1| ribosome-binding factor A [Enterococcus faecalis TX0312]
          Length = 116

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 14/113 (12%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRD----VISISEVCMSVDLRVATVYISLPLDV 66
           R  RVG+E+   +      N+F ++ I RD     I+I++V ++ DL+ AT+Y SL  D+
Sbjct: 5   RDRRVGQEIMREV------NDFLNKRI-RDPRVQGITITDVRVTGDLQQATIYYSLLSDL 57

Query: 67  SPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + +  +    L+     IR  +G+ L  L   PEL F  D S+Q    ++ L+
Sbjct: 58  ASEQQKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELI 109


>gi|15639875|ref|NP_219325.1| ribosome-binding factor A (rbfA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189026113|ref|YP_001933885.1| ribosome-binding factor A [Treponema pallidum subsp. pallidum SS14]
 gi|6093904|sp|O83860|RBFA_TREPA RecName: Full=Ribosome-binding factor A
 gi|238689350|sp|B2S4C7|RBFA_TREPS RecName: Full=Ribosome-binding factor A
 gi|3323207|gb|AAC26580.1| ribosome-binding factor A (rbfA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018688|gb|ACD71306.1| ribosome-binding factor A [Treponema pallidum subsp. pallidum SS14]
 gi|291060249|gb|ADD72984.1| ribosome-binding factor A [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 126

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
           R  ++GE +R+ +  +I+  + +D  +S   +S++ V +S  +  A VY+S  +      
Sbjct: 8   RVRKLGEHIRAEIAQLIMLGKIKDPRVS-PFLSVNWVDVSGGMVCARVYVSSFMGKYKTK 66

Query: 70  RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
           + +  L     FIR  + + LR LR  P L F YD S++  + L+
Sbjct: 67  QGVQGLESAAGFIRSVLAKKLR-LRQCPRLSFVYDESVRDGFSLS 110


>gi|257126081|ref|YP_003164195.1| ribosome-binding factor A [Leptotrichia buccalis C-1013-b]
 gi|257050020|gb|ACV39204.1| ribosome-binding factor A [Leptotrichia buccalis C-1013-b]
          Length = 122

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 6/113 (5%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---LPL 64
           N RR   + +E+   +   +L     D++  ++++SI +V ++ D R   +  S   L  
Sbjct: 2   NDRRKKGLEKEISRIVGMTLLTEVKNDKI--KNLVSIHKVELTKDGRYLDLTFSILDLKD 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +V+ +++   LN    F R +IG  L ++R+VPE+R   D S++   K+ +++
Sbjct: 60  NVNREKIAEDLNKLKGFFRKQIGSQL-SIRFVPEVRIHLDDSVEYGVKIASIL 111


>gi|307288425|ref|ZP_07568413.1| ribosome-binding factor A [Enterococcus faecalis TX0109]
 gi|306500596|gb|EFM69925.1| ribosome-binding factor A [Enterococcus faecalis TX0109]
 gi|315165489|gb|EFU09506.1| ribosome-binding factor A [Enterococcus faecalis TX1302]
          Length = 116

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 6/109 (5%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R  R+G+E+   +   ILN   +D  +    I+I++V ++ DL+ AT+Y SL  D++ + 
Sbjct: 5   RDRRLGQEIMREVND-ILNKRIRDPRVQ--GITITDVRVTGDLQQATIYYSLLSDLASEQ 61

Query: 70  -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +    L+     IR  +G+ L  L   PEL F  D S+Q    ++ L+
Sbjct: 62  QKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELI 109


>gi|157376520|ref|YP_001475120.1| ribosome-binding factor A [Shewanella sediminis HAW-EB3]
 gi|189039562|sp|A8FYR9|RBFA_SHESH RecName: Full=Ribosome-binding factor A
 gi|157318894|gb|ABV37992.1| ribosome-binding factor A [Shewanella sediminis HAW-EB3]
          Length = 143

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           +++++V +S DL  A VY++   +        + AL+    +IR  +   ++ LR +PEL
Sbjct: 35  VTVNDVDVSRDLSYAKVYVTFFEEDEKLVQEKVEALDAAAGYIRSLVAGRMK-LRVMPEL 93

Query: 100 RFRYDTSLQSYWKLNALMC 118
           RF YD+SL    +++ L+ 
Sbjct: 94  RFIYDSSLVEGMRMSNLVS 112


>gi|225027051|ref|ZP_03716243.1| hypothetical protein EUBHAL_01307 [Eubacterium hallii DSM 3353]
 gi|224955515|gb|EEG36724.1| hypothetical protein EUBHAL_01307 [Eubacterium hallii DSM 3353]
          Length = 128

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
           KNS +  R+  EV   L  +I + E +D  I+  + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSVKNTRINSEVLKELSRII-SREIKDPRIA-PMTSVVSVEVAPDLKTCKAYISVLGDK 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            + +  +  L     +IR  + RS+ NLR  P++RF  D S++
Sbjct: 61  EAQESTLEGLRSAHGYIRRELARSI-NLRNTPDVRFILDQSIE 102


>gi|312869024|ref|ZP_07729201.1| ribosome-binding factor A [Lactobacillus oris PB013-T2-3]
 gi|311095450|gb|EFQ53717.1| ribosome-binding factor A [Lactobacillus oris PB013-T2-3]
          Length = 119

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 10/119 (8%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           M NK  +  R A ++  EV   L+  + +   Q        ++I+ V ++ DL+ AT+Y 
Sbjct: 1   MPNKQYRVDRLAQQIQREVDDILLKRVRDPRVQG-------VTITGVDVTGDLQQATIYY 53

Query: 61  SLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S+  D +   ++V + L+     IR  +G  L N+   PE++F  D S+    +++ L+
Sbjct: 54  SILSDKASEMEKVQAGLDKATGLIRSELGARL-NIFKTPEIKFERDKSVAYGSRIDQLI 111


>gi|154506280|ref|ZP_02043018.1| hypothetical protein RUMGNA_03822 [Ruminococcus gnavus ATCC 29149]
 gi|153793419|gb|EDN75839.1| hypothetical protein RUMGNA_03822 [Ruminococcus gnavus ATCC 29149]
          Length = 123

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  R+  EV+  L   IL    +D  ++  + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRINTEVQRELSN-ILRGGIKDPRVA-PMTSVVAVEVAPDLKTCKAYISVLGDK 60

Query: 67  -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            + +  I+ L     +IR  + R++ N+R  PE+RF  D S++
Sbjct: 61  KAQEDTITGLQSAEGYIRRELARTI-NMRNTPEIRFIMDQSIE 102


>gi|317968062|ref|ZP_07969452.1| ribosome-binding factor A [Synechococcus sp. CB0205]
          Length = 136

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 8   NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
             RR  RV   +R  +  +++    +D  +S  ++SI+ V ++ DL+   +++S+     
Sbjct: 3   QGRRVERVAALIRREVSELLVTG-IKDERVSLGMVSITNVDVAGDLQHCKIFVSVYGSAE 61

Query: 68  -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              + +  L     +++G +GR L N+R  PE+ F+ D  ++    +  L+
Sbjct: 62  VQQQALEGLRSASNYVKGELGRRL-NMRRTPEVIFQLDRGIEKGTSVLGLL 111


>gi|110833191|ref|YP_692050.1| ribosome-binding factor A [Alcanivorax borkumensis SK2]
 gi|122959683|sp|Q0VSS0|RBFA_ALCBS RecName: Full=Ribosome-binding factor A
 gi|110646302|emb|CAL15778.1| ribosome-binding factor A [Alcanivorax borkumensis SK2]
          Length = 137

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +++ P+   R  RV ++++  L   +L  E +D  +  ++ +I +V +S DL  A VY +
Sbjct: 3   RHRRPQGFNRTDRVADQIQRELSR-LLQFEMKDPRV--NLATIQDVTVSRDLSYAEVYFT 59

Query: 62  L--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           L    + +       L     F+R  + + L N R  P+LRF YD + +    L+ L+
Sbjct: 60  LLGQGEEAGAEAEEVLTKASGFLRSSLAQGL-NTRTTPKLRFHYDMTPERAAHLSQLI 116


>gi|284006669|emb|CBA71931.1| ribosome-binding factor A [Arsenophonus nasoniae]
          Length = 104

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 11/85 (12%)

Query: 43  SISEVCMSVDLRVATVYISLPLDVSPDR--------VISALNCNI-KFIRGRIGRSLRNL 93
           ++S V +S DL  A V+++  L+++            I  LN ++ K IR  +G+++R L
Sbjct: 3   TVSGVEVSRDLAYAKVFVTF-LNITDQENETEMVKNGIKVLNGDMAKHIRSLLGKAMR-L 60

Query: 94  RYVPELRFRYDTSLQSYWKLNALMC 118
           R VPEL F YD SL    +++ L+ 
Sbjct: 61  RIVPELTFFYDNSLVEGMRMSNLVS 85


>gi|167746754|ref|ZP_02418881.1| hypothetical protein ANACAC_01466 [Anaerostipes caccae DSM 14662]
 gi|167653714|gb|EDR97843.1| hypothetical protein ANACAC_01466 [Anaerostipes caccae DSM 14662]
          Length = 116

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  R+  EV+  L  +I + E +D  I+  + S+ +  ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRINGEVQRELSRII-SREIKDPRIA-PMTSVVDAVVTSDLKQCKAYISVLGDQ 60

Query: 67  -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            + +  ++ L   + +IR  +  S+ NLR  PE+ F  D S++
Sbjct: 61  KAKEDTLNGLRSAVGYIRRELAHSI-NLRNTPEITFILDDSIE 102


>gi|281355266|ref|ZP_06241760.1| ribosome-binding factor A [Victivallis vadensis ATCC BAA-548]
 gi|281318146|gb|EFB02166.1| ribosome-binding factor A [Victivallis vadensis ATCC BAA-548]
          Length = 121

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 41  VISISEVCMSVDLRVATVYISL--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
           ++S++EV  SVDLR ATVY+S+    + +  +V++ L       + ++ R+L   ++ P 
Sbjct: 34  LVSVTEVNTSVDLRNATVYVSIFGGDNAARRKVMNELGEQRLDFQRKLARTLA-FKHTPV 92

Query: 99  LRFRYDTSLQ 108
           L FR DT ++
Sbjct: 93  LDFRLDTRIE 102


>gi|332306992|ref|YP_004434843.1| ribosome-binding factor A [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174321|gb|AEE23575.1| ribosome-binding factor A [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 137

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
           R  RVG+++   +   IL NEF++R     ++++S V +S DL  + +Y++   +     
Sbjct: 7   RTDRVGQQIHKEIAS-ILQNEFKNRDPRLGMVTVSAVEVSRDLSYSKIYVTFFENDEEVM 65

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              ++ L  N  +IR  +   +R +R VP ++F  D SL    +++ L+
Sbjct: 66  KNYLAILEENKGYIRTLLANRMR-MRAVPAIKFVRDGSLSEGIRISNLV 113


>gi|254430062|ref|ZP_05043769.1| ribosome-binding factor A [Alcanivorax sp. DG881]
 gi|196196231|gb|EDX91190.1| ribosome-binding factor A [Alcanivorax sp. DG881]
          Length = 137

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +++ P+   R  R+ ++++  L   +L  E +D  ++  + +I +V +S DL  A VY +
Sbjct: 3   RHRRPQGFNRTDRIADQIQRELSR-LLQFEMKDPRVN--LATIQDVTVSRDLSYAEVYFT 59

Query: 62  L--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           L    + +      AL     F+R  + +SL N R  P+LRF YD + +    L+ L+
Sbjct: 60  LLGQGEEAGVEAEEALVKASGFLRSSLAKSL-NTRTTPKLRFHYDMTPERAAHLSQLI 116


>gi|117919480|ref|YP_868672.1| ribosome-binding factor A [Shewanella sp. ANA-3]
 gi|166219406|sp|A0KTZ7|RBFA_SHESA RecName: Full=Ribosome-binding factor A
 gi|117611812|gb|ABK47266.1| ribosome-binding factor A [Shewanella sp. ANA-3]
          Length = 146

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 8/116 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  R+ ++++  L  V+L  + +D  I    +++++V +S DL  A V+++   +
Sbjct: 2   AKEFSRTRRIAQQLQQEL-AVVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTF-FE 57

Query: 66  VSPDRVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
              + V   LN  I    +IR  +   ++ LR +PE+RF YD+SL    +++ L+ 
Sbjct: 58  EDKELVQEKLNALITAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVS 112


>gi|148543932|ref|YP_001271302.1| ribosome-binding factor A [Lactobacillus reuteri DSM 20016]
 gi|184153328|ref|YP_001841669.1| ribosome-binding factor A [Lactobacillus reuteri JCM 1112]
 gi|194467749|ref|ZP_03073735.1| ribosome-binding factor A [Lactobacillus reuteri 100-23]
 gi|227364841|ref|ZP_03848888.1| ribosome-binding factor A [Lactobacillus reuteri MM2-3]
 gi|325682533|ref|ZP_08162050.1| ribosome-binding factor A [Lactobacillus reuteri MM4-1A]
 gi|172048236|sp|A5VJE1|RBFA_LACRD RecName: Full=Ribosome-binding factor A
 gi|229568640|sp|B2G6V7|RBFA_LACRJ RecName: Full=Ribosome-binding factor A
 gi|148530966|gb|ABQ82965.1| ribosome-binding factor A [Lactobacillus reuteri DSM 20016]
 gi|183224672|dbj|BAG25189.1| ribosome-binding factor A [Lactobacillus reuteri JCM 1112]
 gi|194452602|gb|EDX41500.1| ribosome-binding factor A [Lactobacillus reuteri 100-23]
 gi|227070104|gb|EEI08480.1| ribosome-binding factor A [Lactobacillus reuteri MM2-3]
 gi|324978372|gb|EGC15322.1| ribosome-binding factor A [Lactobacillus reuteri MM4-1A]
          Length = 119

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           P    R  R+ +E++  +  ++L      R+ +   ++I+ V ++ DL+ AT+Y S+  D
Sbjct: 2   PSKQYRVDRLAQEIQKDVDEILLKRVRDPRVQN---VTITGVDVTGDLQQATIYYSILSD 58

Query: 66  VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           ++ D  +  + L+     IR  +G  L N+   PE++F  D S+    +++ L+
Sbjct: 59  LASDAEKAQAGLDKATGLIRSELGARL-NIFKTPEIKFVRDPSVAYGSRIDQLI 111


>gi|227544947|ref|ZP_03974996.1| ribosome-binding factor A [Lactobacillus reuteri CF48-3A]
 gi|300910022|ref|ZP_07127482.1| ribosome-binding factor A [Lactobacillus reuteri SD2112]
 gi|227185058|gb|EEI65129.1| ribosome-binding factor A [Lactobacillus reuteri CF48-3A]
 gi|300892670|gb|EFK86030.1| ribosome-binding factor A [Lactobacillus reuteri SD2112]
          Length = 119

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 6/114 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           P    R  R+ +E++  +  ++L      R+ +   ++I+ V ++ DL+ AT+Y S+  D
Sbjct: 2   PSKHYRVDRLAQEIQKDVDEILLKRVRDPRVQN---VTITGVDVTGDLQQATIYYSILSD 58

Query: 66  VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           ++ D  +  + L+     IR  +G  L N+   PE++F  D S+    +++ L+
Sbjct: 59  LASDAEKAQAGLDKATGLIRSELGARL-NIFKTPEIKFVRDPSVAYGSRIDQLI 111


>gi|332532412|ref|ZP_08408290.1| ribosome-binding factor A [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038055|gb|EGI74502.1| ribosome-binding factor A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 160

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R  RV ++++  +  VIL  E +D  +   ++++S V +S DL  A ++I++      D 
Sbjct: 6   RTDRVAQQIQKEI-AVILQREIKDPRLG--MVTVSAVEVSRDLSYAKIFITVFNTQDEDA 62

Query: 70  --RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             +    LN    +IR  +G+ +R  R +PEL+F  D SL    +++ L+
Sbjct: 63  AKQSAKVLNEATGYIRSLLGKRIR-ARIMPELKFVVDNSLMEGMRISNLV 111


>gi|94501383|ref|ZP_01307903.1| ribosome-binding factor A [Oceanobacter sp. RED65]
 gi|94426496|gb|EAT11484.1| ribosome-binding factor A [Oceanobacter sp. RED65]
          Length = 129

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 11/118 (9%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---P 63
           K+  R  R+GE+++  L  ++  +    RL    +++++ V ++ DL  A +Y ++    
Sbjct: 3   KDYSRTQRLGEQIKRELAHMLQFDVKDPRL---GIVTLNAVKVASDLGYADIYFTVMKSG 59

Query: 64  LDVSPDRVISA----LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           +  + D  ++     LN    F+R  + + LR  R  P+ RF YD +L+   KL  L+
Sbjct: 60  MVEADDETVAETEQILNDMSGFLRTELSQILRT-RITPQPRFHYDVALERGHKLTNLI 116


>gi|256419440|ref|YP_003120093.1| ribosome-binding factor A [Chitinophaga pinensis DSM 2588]
 gi|256034348|gb|ACU57892.1| ribosome-binding factor A [Chitinophaga pinensis DSM 2588]
          Length = 124

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           + S+R  ++G+ ++  L  +     F   ++   +ISIS V ++ DL  A VY+S+    
Sbjct: 2   QESKRQKQIGQLLQKELSEIFQRMGFN--VVDGGMISISSVKLTPDLLEARVYLSMFKIA 59

Query: 67  SPDRVISALNCNIKFIRGRIG-RSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
               +++ +   +  I+  +G R  + LR VPE+    D +L+  +K+  L
Sbjct: 60  DSHEMVNRIKERMGEIKKDLGNRVGKQLRRVPEISLFLDDTLEYIFKMEEL 110


>gi|169334796|ref|ZP_02861989.1| hypothetical protein ANASTE_01202 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257534|gb|EDS71500.1| hypothetical protein ANASTE_01202 [Anaerofustis stercorihominis DSM
           17244]
          Length = 121

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 41  VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           +IS+  V  + DL+ A VY+S +  +   + +I  L+    F+R  I + L N R  PEL
Sbjct: 33  IISVVRVKATPDLKYAKVYVSVMGENNKKEEIIGVLDKAKGFLRKSIAKVL-NTRNTPEL 91

Query: 100 RFRYDTSLQSYWKLNALMC 118
            F  D SL     ++ ++ 
Sbjct: 92  IFELDNSLDYAMHIDEVLA 110


>gi|116515163|ref|YP_802792.1| hypothetical protein BCc_230 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285441|sp|Q057K0|RBFA_BUCCC RecName: Full=Ribosome-binding factor A
 gi|116257017|gb|ABJ90699.1| ribosome-binding factor A [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 116

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R++R+   +   +  +I  N    RL S   I+I+EV +S DL  A V+I+  L+ 
Sbjct: 3   KDFSRSMRLERSLYKEIAVIIQKNLRDPRLNS--FITITEVKLSYDLSYAKVFITF-LNY 59

Query: 67  SPDR----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
              +    ++  L     +IR  + + +  LR VP+L F YDTSL
Sbjct: 60  DDKKNIKIILGILQNATGYIRSLLNKKIY-LRIVPKLFFVYDTSL 103


>gi|119477400|ref|ZP_01617591.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2143]
 gi|119449326|gb|EAW30565.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2143]
          Length = 133

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
           R  RV + ++  L  +I  +E +D  +   ++SI++V +S D+  A V+ ++     +  
Sbjct: 7   RTQRVADFLKQELATLI-QSEMRDPRVG--MVSITDVEVSRDMSHAKVFTTVLGKESEQE 63

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
               I+ LN    F+R  + + + N R  P+LRF +D+S+     L++L+
Sbjct: 64  AAEAIAVLNKAAGFLRSEMAK-INNARTTPKLRFYFDSSVGRGQFLSSLI 112


>gi|328957412|ref|YP_004374798.1| ribosome-binding factor A [Carnobacterium sp. 17-4]
 gi|328673736|gb|AEB29782.1| ribosome-binding factor A [Carnobacterium sp. 17-4]
          Length = 115

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCN--IKFIRGRIGRSLRNLRYVPEL 99
           ++I++V ++ DL+ ATV+ S+  D + DR  + L  +     +R  +G+ L +L   PE+
Sbjct: 33  VNITDVRVTGDLQQATVFYSILSDKASDREKTQLGLDKASGLVRSELGQRL-SLYKTPEI 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           +F  D S++    ++ L+
Sbjct: 92  KFERDESVEYGNHIDELL 109


>gi|192359933|ref|YP_001980960.1| ribosome-binding factor A [Cellvibrio japonicus Ueda107]
 gi|238692444|sp|B3PI97|RBFA_CELJU RecName: Full=Ribosome-binding factor A
 gi|190686098|gb|ACE83776.1| ribosome-binding factor A [Cellvibrio japonicus Ueda107]
          Length = 136

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 9/116 (7%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
           P+   R+ RV + ++  L  VI       RL    +++I+ V +S D+  A VY++  + 
Sbjct: 2   PREFTRSDRVSDAIQRLLAQVIPQEVRDPRL---GMVNINAVAVSRDMAFAKVYVTF-VG 57

Query: 66  VSPD----RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           V+ +      I  LN    F+R  + R L ++R VP+L+F YD +     +L++L+
Sbjct: 58  VTDEPKSLEGIGILNKASGFLRSFVAREL-SMRTVPKLQFIYDKTSIRGQELSSLI 112


>gi|239787341|emb|CAX83818.1| Ribosome-binding factor A [uncultured bacterium]
          Length = 143

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNN-----EFQDRLISRD-VISISEVCMSVDLRV 55
           K + PK++ R LR+ +EV+  +  +I        +    +++ D +++I+   +S D++ 
Sbjct: 8   KTQQPKSANRQLRLCQEVQRFVSELITRKVLPPVDIDGVMVTADPLMTIARADVSPDMKT 67

Query: 56  ATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
           A +Y+    D      +  L      +R  + + L N+R+ PEL F  D  ++   +++ 
Sbjct: 68  AKIYVRHFDDNQLPASLKYLEAVKSVMRHAMAKQL-NMRFTPELSFHVDALVEKERRMDE 126

Query: 116 LMC 118
           L  
Sbjct: 127 LFS 129


>gi|300775162|ref|ZP_07085024.1| ribosome-binding factor A [Chryseobacterium gleum ATCC 35910]
 gi|300505902|gb|EFK37038.1| ribosome-binding factor A [Chryseobacterium gleum ATCC 35910]
          Length = 119

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
           ++S+S+V ++ DL +A +Y+S+        V+  +  N    R  IG+ + + +R +P+L
Sbjct: 33  LVSVSDVKVTADLGIAKIYLSIFPQEFRTAVMKEIEENKPQYRNFIGQKMAKQVRIIPQL 92

Query: 100 RFRYDTSLQSYWKLN 114
            F  DT+L    +L 
Sbjct: 93  NFYLDTALDDVERLE 107


>gi|325265384|ref|ZP_08132108.1| ribosome-binding factor A [Clostridium sp. D5]
 gi|324029385|gb|EGB90676.1| ribosome-binding factor A [Clostridium sp. D5]
          Length = 123

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  R+  EV+  L   IL    +D  ++  + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRINTEVQRELSN-ILRGGIKDPRVA-PMTSVVAVEVAPDLKTCKAYISVLGDK 60

Query: 67  -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
            + +  I  L     +IR  + R++ N+R  PE+RF  D S++
Sbjct: 61  KAQEDTIKGLQSAEGYIRRELARTI-NMRNTPEIRFIMDQSIE 102


>gi|167758069|ref|ZP_02430196.1| hypothetical protein CLOSCI_00407 [Clostridium scindens ATCC 35704]
 gi|167663966|gb|EDS08096.1| hypothetical protein CLOSCI_00407 [Clostridium scindens ATCC 35704]
          Length = 127

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K S +  RV  EV+  L  +I       R+     +  +EV    DL+    YIS+  D 
Sbjct: 3   KRSIKNTRVSTEVQRELSNIIRGGIKDPRVAPWTSVVTAEVAP--DLKTCKAYISVLGDA 60

Query: 67  SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              +  I  L     +IR  + R+L NLR  PE+RF  D S++
Sbjct: 61  HEQEETIKGLQSAEGYIRRELARTL-NLRNTPEIRFVLDQSIE 102


>gi|326803573|ref|YP_004321391.1| ribosome-binding factor A [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651360|gb|AEA01543.1| ribosome-binding factor A [Aerococcus urinae ACS-120-V-Col10a]
          Length = 117

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 6/112 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           +RR  RV +E+   +   IL  E +D  +    I+I++V ++ DL+ AT+Y S   D   
Sbjct: 4   NRRVERVSQEILREVNS-ILRKEVKDPRVKN--ITITDVDLTGDLQNATIYYSTLSDSQS 60

Query: 69  --DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
             ++V   L+     +R  +G+ LR +   PE+ F+ D S++   +++ L+ 
Sbjct: 61  EHEKVQKGLDKVSGLVRSLLGQRLR-IYKTPEVVFKRDESIEYGQRIDQLLA 111


>gi|160903126|ref|YP_001568707.1| ribosome-binding factor A [Petrotoga mobilis SJ95]
 gi|182676541|sp|A9BI93|RBFA_PETMO RecName: Full=Ribosome-binding factor A
 gi|160360770|gb|ABX32384.1| ribosome-binding factor A [Petrotoga mobilis SJ95]
          Length = 117

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           I I+ V +S D     VY+S  LD   D +I+ LN      R  I ++++  + VPE+RF
Sbjct: 34  IDINMVRLSKDKSYLDVYVS-SLDEDIDTIINILNNAKGMFRTLIAKNIKMFK-VPEVRF 91

Query: 102 RYDTSLQSYWKLNALM 117
             D  +++  ++N L+
Sbjct: 92  HKDEGIEASIRINKLI 107


>gi|153855234|ref|ZP_01996400.1| hypothetical protein DORLON_02414 [Dorea longicatena DSM 13814]
 gi|149752233|gb|EDM62164.1| hypothetical protein DORLON_02414 [Dorea longicatena DSM 13814]
          Length = 128

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K S +  RV  EV+  L  +I       R+     +  +EV  + DL+    YIS+  D 
Sbjct: 3   KRSIKNTRVNTEVQHELSNIIRGGLKDPRVAPWTSVVAAEV--APDLKTCKAYISVLGDA 60

Query: 67  -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              ++ I  L     +IR  + R+L NLR  PE++F  D S++
Sbjct: 61  YEQEQTIKGLQSAEGYIRRELARTL-NLRNTPEIKFVLDQSIE 102


>gi|69246866|ref|ZP_00604158.1| Ribosome-binding factor A [Enterococcus faecium DO]
 gi|257882940|ref|ZP_05662593.1| ribosome-binding factor A [Enterococcus faecium 1,231,502]
 gi|257889281|ref|ZP_05668934.1| ribosome-binding factor A [Enterococcus faecium 1,231,410]
 gi|258615954|ref|ZP_05713724.1| ribosome-binding factor A [Enterococcus faecium DO]
 gi|260560107|ref|ZP_05832285.1| ribosome-binding factor A [Enterococcus faecium C68]
 gi|293560196|ref|ZP_06676698.1| ribosome-binding factor A [Enterococcus faecium E1162]
 gi|294620767|ref|ZP_06699974.1| ribosome-binding factor A [Enterococcus faecium U0317]
 gi|314937509|ref|ZP_07844842.1| ribosome-binding factor A [Enterococcus faecium TX0133a04]
 gi|314942168|ref|ZP_07849022.1| ribosome-binding factor A [Enterococcus faecium TX0133C]
 gi|314947492|ref|ZP_07850907.1| ribosome-binding factor A [Enterococcus faecium TX0082]
 gi|314951479|ref|ZP_07854528.1| ribosome-binding factor A [Enterococcus faecium TX0133A]
 gi|314992569|ref|ZP_07857987.1| ribosome-binding factor A [Enterococcus faecium TX0133B]
 gi|314995496|ref|ZP_07860596.1| ribosome-binding factor A [Enterococcus faecium TX0133a01]
 gi|68195047|gb|EAN09510.1| Ribosome-binding factor A [Enterococcus faecium DO]
 gi|257818598|gb|EEV45926.1| ribosome-binding factor A [Enterococcus faecium 1,231,502]
 gi|257825641|gb|EEV52267.1| ribosome-binding factor A [Enterococcus faecium 1,231,410]
 gi|260073942|gb|EEW62266.1| ribosome-binding factor A [Enterococcus faecium C68]
 gi|291599747|gb|EFF30757.1| ribosome-binding factor A [Enterococcus faecium U0317]
 gi|291605868|gb|EFF35300.1| ribosome-binding factor A [Enterococcus faecium E1162]
 gi|313590330|gb|EFR69175.1| ribosome-binding factor A [Enterococcus faecium TX0133a01]
 gi|313592861|gb|EFR71706.1| ribosome-binding factor A [Enterococcus faecium TX0133B]
 gi|313596319|gb|EFR75164.1| ribosome-binding factor A [Enterococcus faecium TX0133A]
 gi|313599091|gb|EFR77936.1| ribosome-binding factor A [Enterococcus faecium TX0133C]
 gi|313643150|gb|EFS07730.1| ribosome-binding factor A [Enterococcus faecium TX0133a04]
 gi|313646042|gb|EFS10622.1| ribosome-binding factor A [Enterococcus faecium TX0082]
          Length = 115

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  RVG+E+   +   IL  + +D  +    ++I++V ++ DL+ AT+Y S+  D++ D+
Sbjct: 5   RDRRVGQEILKEVND-ILRKKVRDPRVEN--VTITDVKVTGDLQQATIYYSILSDLASDK 61

Query: 71  VIS--ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
             +   LN     IR  +G +L ++   PEL F  D S+
Sbjct: 62  KTAQDGLNKASGLIRRELGHNL-SIYKTPELFFELDESV 99


>gi|166030872|ref|ZP_02233701.1| hypothetical protein DORFOR_00552 [Dorea formicigenerans ATCC
           27755]
 gi|166029139|gb|EDR47896.1| hypothetical protein DORFOR_00552 [Dorea formicigenerans ATCC
           27755]
          Length = 119

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 43  SISEVCMSVDLRVATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           S+  V ++ DL+    YIS+  DV + +  I  L     FIR  + R+L N+R  PE++F
Sbjct: 27  SVVAVEVAPDLKTCKAYISVLGDVKAQEDTIKGLRSAEGFIRRELARTL-NMRNTPEIQF 85

Query: 102 RYDTSLQ 108
             D S++
Sbjct: 86  ILDQSIE 92


>gi|218282335|ref|ZP_03488625.1| hypothetical protein EUBIFOR_01207 [Eubacterium biforme DSM 3989]
 gi|218216708|gb|EEC90246.1| hypothetical protein EUBIFOR_01207 [Eubacterium biforme DSM 3989]
          Length = 112

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 43  SISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
           +I++V  + DL  A VY++ L      D  +  LN +  FIR ++ + ++ +R +PEL F
Sbjct: 33  TITDVRCTNDLSQAKVYVTFLGKQGRNDAGMRVLNQSKGFIRSQVAKKIK-IRKMPELIF 91

Query: 102 RYDTSLQSYWKLNALM 117
             DTSL+   K+  ++
Sbjct: 92  VQDTSLEQGNKIENIL 107


>gi|302832513|ref|XP_002947821.1| hypothetical protein VOLCADRAFT_88099 [Volvox carteri f.
           nagariensis]
 gi|300267169|gb|EFJ51354.1| hypothetical protein VOLCADRAFT_88099 [Volvox carteri f.
           nagariensis]
          Length = 2634

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIK-FIRGRIGRSLRNLRYVPEL 99
           V SI+   +S DL+V  V++S+  D    RV       ++ ++R  IG+ +R LR  PE+
Sbjct: 107 VASITNTYVSNDLQVVKVFVSVYSDDYGKRVAMQNLARLEPYVRVLIGQRVR-LRRTPEV 165

Query: 100 RFRYDTS 106
           RF YD S
Sbjct: 166 RFVYDDS 172


>gi|225012557|ref|ZP_03702993.1| ribosome-binding factor A [Flavobacteria bacterium MS024-2A]
 gi|225003534|gb|EEG41508.1| ribosome-binding factor A [Flavobacteria bacterium MS024-2A]
          Length = 133

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 37  ISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRY 95
           +S  +IS+++V ++ DL  A +Y+S+       R    L  N   +R  + + ++N LR 
Sbjct: 33  VSNLMISVTKVHVTSDLTSAKIYLSIFPTQDAQRHFEVLKENKFQLRHDLSQRMKNQLRR 92

Query: 96  VPELRFRYDTSL 107
           VP+L+F  D SL
Sbjct: 93  VPDLQFFLDDSL 104


>gi|257878522|ref|ZP_05658175.1| ribosome-binding factor A [Enterococcus faecium 1,230,933]
 gi|257884346|ref|ZP_05663999.1| ribosome-binding factor A [Enterococcus faecium 1,231,501]
 gi|261207405|ref|ZP_05922091.1| ribosome-binding factor A [Enterococcus faecium TC 6]
 gi|289566672|ref|ZP_06447089.1| ribosome-binding factor A [Enterococcus faecium D344SRF]
 gi|293556653|ref|ZP_06675218.1| ribosome-binding factor A [Enterococcus faecium E1039]
 gi|293567727|ref|ZP_06679069.1| ribosome-binding factor A [Enterococcus faecium E1071]
 gi|294613933|ref|ZP_06693868.1| ribosome-binding factor A [Enterococcus faecium E1636]
 gi|294618719|ref|ZP_06698251.1| ribosome-binding factor A [Enterococcus faecium E1679]
 gi|257812750|gb|EEV41508.1| ribosome-binding factor A [Enterococcus faecium 1,230,933]
 gi|257820184|gb|EEV47332.1| ribosome-binding factor A [Enterococcus faecium 1,231,501]
 gi|260078296|gb|EEW66001.1| ribosome-binding factor A [Enterococcus faecium TC 6]
 gi|289161531|gb|EFD09414.1| ribosome-binding factor A [Enterococcus faecium D344SRF]
 gi|291589570|gb|EFF21376.1| ribosome-binding factor A [Enterococcus faecium E1071]
 gi|291593208|gb|EFF24782.1| ribosome-binding factor A [Enterococcus faecium E1636]
 gi|291595032|gb|EFF26377.1| ribosome-binding factor A [Enterococcus faecium E1679]
 gi|291601188|gb|EFF31475.1| ribosome-binding factor A [Enterococcus faecium E1039]
          Length = 115

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R  RVG+E+   +   IL  + +D  +    ++I++V ++ DL+ AT+Y S+  D++ D 
Sbjct: 5   RDRRVGQEILKEVND-ILRKKVRDPRVEN--VTITDVKVTGDLQQATIYYSILSDLASDK 61

Query: 70  -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            +    LN     IR  +G +L ++   PEL F  D S+
Sbjct: 62  KKAQDGLNKASGLIRRELGHNL-SIYKTPELFFELDESV 99


>gi|269115302|ref|YP_003303065.1| ribosome-binding factor A [Mycoplasma hominis]
 gi|268322927|emb|CAX37662.1| Ribosome-binding factor A [Mycoplasma hominis ATCC 23114]
          Length = 113

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 15  VGEEVRSALMWVILNNEFQDRLISRDV--ISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
           +  E ++ L+  ++ N F + L   DV  ISI++V +S D   A +Y++L  D    R +
Sbjct: 4   INHERKTQLLLELIGNSFYE-LKDFDVTNISINDVILSNDGSHAKIYVTLFKD--QKRYL 60

Query: 73  SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
             L     FIR  + ++ +  + +PEL F  DT  +   K++ ++
Sbjct: 61  EKLTTMTPFIRSVVAKNWK-YKVLPELIFEIDTVEEHAAKIDKIL 104


>gi|150009888|ref|YP_001304631.1| ribosome-binding factor A [Parabacteroides distasonis ATCC 8503]
 gi|255012869|ref|ZP_05284995.1| ribosome-binding factor A [Bacteroides sp. 2_1_7]
 gi|256838403|ref|ZP_05543913.1| ribosome-binding factor A [Parabacteroides sp. D13]
 gi|262382836|ref|ZP_06075973.1| ribosome-binding factor A [Bacteroides sp. 2_1_33B]
 gi|298374242|ref|ZP_06984200.1| ribosome-binding factor A [Bacteroides sp. 3_1_19]
 gi|301312380|ref|ZP_07218296.1| ribosome-binding factor A [Bacteroides sp. 20_3]
 gi|149938312|gb|ABR45009.1| ribosome-binding factor A [Parabacteroides distasonis ATCC 8503]
 gi|256739322|gb|EEU52646.1| ribosome-binding factor A [Parabacteroides sp. D13]
 gi|262295714|gb|EEY83645.1| ribosome-binding factor A [Bacteroides sp. 2_1_33B]
 gi|298268610|gb|EFI10265.1| ribosome-binding factor A [Bacteroides sp. 3_1_19]
 gi|300829563|gb|EFK60217.1| ribosome-binding factor A [Bacteroides sp. 20_3]
          Length = 111

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 52  DLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQS 109
           DL VA  Y+S+ P D S + ++ A+  N K IR  +G+ +R  +R +PEL F  D SL  
Sbjct: 43  DLSVARAYLSIFPSDKSQE-LLEAIRSNTKAIRFDLGQRIRLQVRKIPELSFFIDDSLDY 101

Query: 110 YWKLNALM 117
              ++ L+
Sbjct: 102 IENIDNLL 109


>gi|94263055|ref|ZP_01286874.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
 gi|94268658|ref|ZP_01291247.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
 gi|93451513|gb|EAT02336.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
 gi|93456598|gb|EAT06706.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
          Length = 131

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 15  VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
           V +E+R  +  ++L      R+   + ++I +  ++ DLR A +Y S+  D +     + 
Sbjct: 29  VADEIRQEVATLLLAKVKDPRV---EQVTILKATVTADLRQARIYYSVLHDEAAADAAAG 85

Query: 75  LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           L     FIR  + ++L  LR VP L F  D SL     L  L+ 
Sbjct: 86  LESARSFIRRSLAKNL-VLRVVPALIFERDRSLADQQHLEQLLA 128


>gi|160913526|ref|ZP_02076217.1| hypothetical protein EUBDOL_00002 [Eubacterium dolichum DSM 3991]
 gi|158434078|gb|EDP12367.1| hypothetical protein EUBDOL_00002 [Eubacterium dolichum DSM 3991]
          Length = 120

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 42  ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           I+I++V +S DL +A VY+S L         + AL  +  FIR  + + +  +R VP L 
Sbjct: 40  ITITDVVVSGDLSIAKVYVSFLGQKAREAAGMKALERSKGFIRSELAKRM-TIRKVPSLV 98

Query: 101 FRYDTSLQSYWKLNALM 117
           F  D SL+   K+  ++
Sbjct: 99  FLIDDSLEKGNKIENII 115


>gi|262277757|ref|ZP_06055550.1| ribosome-binding factor A [alpha proteobacterium HIMB114]
 gi|262224860|gb|EEY75319.1| ribosome-binding factor A [alpha proteobacterium HIMB114]
          Length = 121

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKN N   ++R L+ GE ++  L    +        I   +++I+EV +S DL+ A V+ 
Sbjct: 1   MKNNNQPFTQRQLKAGENLKKILARSFIQQNIILPEIDTKLVTITEVRVSPDLKHAKVFF 60

Query: 61  SLPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +PL   D+  D+ +  LN     I+    +     +++P L F  D S     K+  L+
Sbjct: 61  -MPLAGRDI--DKFLKTLNEYSLEIKKSASKEW-TAKFMPNLNFVIDESFDYAEKIENLL 116

Query: 118 CLPK 121
              K
Sbjct: 117 LKDK 120


>gi|170727893|ref|YP_001761919.1| ribosome-binding factor A [Shewanella woodyi ATCC 51908]
 gi|238688729|sp|B1KRQ9|RBFA_SHEWM RecName: Full=Ribosome-binding factor A
 gi|169813240|gb|ACA87824.1| ribosome-binding factor A [Shewanella woodyi ATCC 51908]
          Length = 140

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 41  VISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
           ++++++V +S DL  A V+++   + S   +  + AL     ++R  +   ++ LR +PE
Sbjct: 34  MVTVNDVEVSRDLSYAKVFVTFFEEDSKLVEEKLEALTTASGYVRSLVAGRMK-LRVMPE 92

Query: 99  LRFRYDTSLQSYWKLNALMC 118
           LRF YD SL    +++ L+ 
Sbjct: 93  LRFVYDASLVEGMRMSNLVT 112


>gi|257894719|ref|ZP_05674372.1| ribosome-binding factor A [Enterococcus faecium 1,231,408]
 gi|257831098|gb|EEV57705.1| ribosome-binding factor A [Enterococcus faecium 1,231,408]
          Length = 113

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R  RVG+E+   +   IL  + +D  +    ++I++V ++ DL+ AT+Y S+  D++ D 
Sbjct: 5   RDRRVGQEILKEVND-ILRKKVRDPRVEN--VTITDVKVTGDLQQATIYYSILSDLASDK 61

Query: 70  -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            +    LN     IR  +G +L ++   PEL F  D S+
Sbjct: 62  KKAQDGLNKASGLIRRELGHNL-SIYKTPELFFELDESV 99


>gi|260589526|ref|ZP_05855439.1| ribosome-binding factor A [Blautia hansenii DSM 20583]
 gi|260540094|gb|EEX20663.1| ribosome-binding factor A [Blautia hansenii DSM 20583]
          Length = 128

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  RV  EV+  L  +I       R+    + S++ V ++ DL+    YIS +  +
Sbjct: 3   KNSIKNTRVNVEVQHELANLIREGIKDPRI--HPMTSVTAVEVAPDLKTCRAYISVMGNE 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            + +  I  L     +IR ++ +++ NLR  PE+RF  D S++    ++ L+
Sbjct: 61  EAKNNTIVGLKSAEGYIRRQLAKNI-NLRNTPEIRFILDESIEYGVAMSKLI 111


>gi|160872477|ref|ZP_02062609.1| ribosome-binding factor A [Rickettsiella grylli]
 gi|159121276|gb|EDP46614.1| ribosome-binding factor A [Rickettsiella grylli]
          Length = 130

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 18/123 (14%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV-YISLPL 64
            KNS R  R+ + ++  L   ILN E  D  +    I+I+ V +S DL  A + +  L +
Sbjct: 2   QKNSNRVARIADLIKKELSNHILNKEIADSRLK--FITITSVKVSRDLSYADILFTQLSV 59

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRY----------VPELRFRYDTSLQSYWKLN 114
           + S ++        ++ +R    R    LRY          +P LRF YD  L+   +L+
Sbjct: 60  ENSDEKQKDK-ELAVQLVRKASAR----LRYALAQRLHLYKIPRLRFFYDDFLEESHRLH 114

Query: 115 ALM 117
            L+
Sbjct: 115 CLI 117


>gi|217077837|ref|YP_002335555.1| ribosome-binding factor A [Thermosipho africanus TCF52B]
 gi|226736652|sp|B7IDY7|RBFA_THEAB RecName: Full=Ribosome-binding factor A
 gi|217037692|gb|ACJ76214.1| ribosome-binding factor A [Thermosipho africanus TCF52B]
          Length = 126

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 39  RDVISISEVCMSVDLRVATVYISLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVP 97
           +D I IS V +S D R A V++S+  +     + +  L     + R  + +++R L   P
Sbjct: 34  KDYIVISRVLISKDRRFADVFVSVIGNSEQRKKAVELLEKYKGYFRTFVAKNVR-LYTAP 92

Query: 98  ELRFRYDTSLQSYWKLNALM 117
           ELRF+ D  ++   ++N L+
Sbjct: 93  ELRFKEDKGIEESVRINKLL 112


>gi|302670331|ref|YP_003830291.1| ribosome-binding factor A RbfA [Butyrivibrio proteoclasticus B316]
 gi|302394804|gb|ADL33709.1| ribosome-binding factor A RbfA [Butyrivibrio proteoclasticus B316]
          Length = 142

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 41  VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           + S+ +V ++ DL+   V+++ +  D    R    L     ++R  + + L N+RY PE+
Sbjct: 34  MTSVMDVEVAPDLKTCKVWVTVMGDDEDRARTAEGLKSAAGYVRSTLAKEL-NMRYTPEI 92

Query: 100 RFRYDTSLQ 108
           RF  D S++
Sbjct: 93  RFIMDDSIE 101


>gi|282857791|ref|ZP_06267000.1| ribosome-binding factor A [Pyramidobacter piscolens W5455]
 gi|282584461|gb|EFB89820.1| ribosome-binding factor A [Pyramidobacter piscolens W5455]
          Length = 131

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 26  VILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGR 85
           +IL+ E +D  ++ +VI  S  C S DL+ A VY +   +     +   L     ++R  
Sbjct: 19  LILSREVRDEKLA-EVIVTSVEC-SKDLKYAKVYYTTLREEGRAEIAKLLEKVSGYVRSS 76

Query: 86  IGRSLRNLRYVPELRFRYDTS 106
           +GR L + R VPEL FR+D S
Sbjct: 77  LGRVL-SYRTVPELTFRFDDS 96


>gi|71891892|ref|YP_277622.1| 30S ribosome-binding factor [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|123641156|sp|Q493T6|RBFA_BLOPB RecName: Full=Ribosome-binding factor A
 gi|71795998|gb|AAZ40749.1| 30S ribosome-binding factor [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 119

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 7/114 (6%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           ++S R  R+  E+   +  +IL ++  D  I   + +IS V +S DL+ A ++++     
Sbjct: 4   QHSYRTQRIANEIHKKV-SIILQHKIDD--IRIGIPTISGVQVSKDLKNANIFVTFINKE 60

Query: 67  SPDRVISA---LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            P+ + +A   L    +FIR  +  ++  +R  P L F+YD+SL    K+ +L+
Sbjct: 61  GPEEIDTAVMILQRASRFIRFLLANTM-CIRVAPILFFKYDSSLIEGAKVCSLI 113


>gi|210612469|ref|ZP_03289327.1| hypothetical protein CLONEX_01528 [Clostridium nexile DSM 1787]
 gi|210151577|gb|EEA82584.1| hypothetical protein CLONEX_01528 [Clostridium nexile DSM 1787]
          Length = 123

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  RV  EV+  L  +I       R+    + S+  V ++ DL+    YIS L  +
Sbjct: 3   KNSIKNTRVNGEVQRELSNIIRGGIKDPRVAP--MTSVVAVEVAPDLKTCKAYISVLGDE 60

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            + +  I  L     +IR  + R L N+R  PE++F  D S+
Sbjct: 61  KAQEDTIKGLQSAEGYIRRELARKL-NMRNTPEIKFVMDQSI 101


>gi|147834309|emb|CAN61115.1| hypothetical protein VITISV_035585 [Vitis vinifera]
          Length = 731

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 55  VATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
           V  VY+S+  D     V I+ L    K++R  +GR ++ LR  PE+RF  D SL+
Sbjct: 664 VVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMK-LRLTPEIRFVEDESLE 717


>gi|187918656|ref|YP_001884222.1| ribosome-binding factor A [Borrelia hermsii DAH]
 gi|238689300|sp|B2S1E6|RBFA_BORHD RecName: Full=Ribosome-binding factor A
 gi|119861504|gb|AAX17299.1| ribosome-binding factor A [Borrelia hermsii DAH]
          Length = 119

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 17  EEVRSALMWVILNNEFQDRLISRDV--------ISISEVCMSVDLRVATVYI-SLPLDVS 67
           +E+R + +  +L  E  + ++++ +        +++  V +S DL  A V+I S+    S
Sbjct: 3   KEIRKSKLESLLVQEIGNLILTKGIKDPRVHEFLTVVRVEISNDLINAKVFIGSIKEGAS 62

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            D  + ALN    FI+G I + +R +R  P+L F  D ++   + +N ++
Sbjct: 63  LDNAVKALNNAKGFIQGEIVKRIR-VRNTPKLSFLRDDTISKAFYVNKII 111


>gi|15607135|ref|NP_213070.1| ribosome-binding factor A [Aquifex aeolicus VF5]
          Length = 107

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           SR+  R+GE+++  +   ++ N   D      V+SI+ V +S D   A VY ++  + + 
Sbjct: 2   SRKKERLGEQIKEIIASFVVENAPTDL----GVVSITRVELSKDGSKAKVYFTVLPEGNA 57

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
           +RV   L  N + +  +I +    ++ +P L F  D  ++   KL
Sbjct: 58  ERVKDFLEENKRVLLSKIKK--LKVKTIPSLEFEEDREIKIMEKL 100


>gi|288574928|ref|ZP_06393285.1| ribosome-binding factor A [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570669|gb|EFC92226.1| ribosome-binding factor A [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 146

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 44  ISEVCMSVDLRVATVYISLPLDVSP-DR--VISALNCNIKFIRGRIGRSLRNLRYVPELR 100
           ++ V  + DL+ A VY +    +SP DR  V  +L     F+R  + ++LR +R VPELR
Sbjct: 53  VTGVDCAKDLKSAKVYFTT---ISPEDRRSVSESLKKVRTFLRSSLAQTLR-IRTVPELR 108

Query: 101 FRYDTSLQSYWKLNALM 117
           F YDTS +    ++ L+
Sbjct: 109 FIYDTSGEYGRSIDRLL 125


>gi|254482563|ref|ZP_05095802.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2148]
 gi|214037254|gb|EEB77922.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2148]
          Length = 132

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 24  MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS---ALNCNIK 80
           +  ++ +E +D  +   ++SI+ V +S D+  A VY +     S D       ALN    
Sbjct: 19  LAALIQHEVRDPRVG--MVSITGVDVSRDMGHAKVYYTSMSANSTDESKECNEALNKAAG 76

Query: 81  FIRGRIGRSLRNLRYVPELRFRYDTSL 107
           F+R ++ R   ++R VP+LRF +D+S+
Sbjct: 77  FLRSQLSRE-SSMRMVPQLRFYFDSSV 102


>gi|319950917|ref|ZP_08024794.1| ribosome-binding factor A [Dietzia cinnamea P4]
 gi|319435410|gb|EFV90653.1| ribosome-binding factor A [Dietzia cinnamea P4]
          Length = 152

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 13/115 (11%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
           RA R+G+ +   ++   + +E +D  +  + ++I++  ++ DLRVAT+Y ++    LD  
Sbjct: 6   RAGRLGKRI-GEIVATAIEHEIKDPRL--EYVTITDSRITADLRVATLYYTVRGETLDEE 62

Query: 68  PDRVISALNCNIKFIRGR----IGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           PD  + A    +   RGR    +GR    +++ PEL F  D+   +   +  L+ 
Sbjct: 63  PD--LEAAEAALTAARGRLRTMVGRQT-GVKFTPELTFVLDSVPDAARHMEELLA 114


>gi|266622968|ref|ZP_06115903.1| ribosome-binding factor A [Clostridium hathewayi DSM 13479]
 gi|288865261|gb|EFC97559.1| ribosome-binding factor A [Clostridium hathewayi DSM 13479]
          Length = 120

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  R+  EV+  L  +I   E +D  I   + ++  V ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRINMEVQRELSEII-RLEIKDPRI-HPMTTVVAVSVTPDLKFCKAYISILGDE 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
              +  I  L     +IR  + R + NLR  PE++F  D S++    ++ L+
Sbjct: 61  EAGKATIEGLKSAEGYIRRELARRV-NLRNTPEIKFILDQSIEYGVNMSKLI 111


>gi|26553566|ref|NP_757500.1| ribosome-binding factor A [Mycoplasma penetrans HF-2]
 gi|29427771|sp|Q8EWT9|RBFA_MYCPE RecName: Full=Ribosome-binding factor A
 gi|26453572|dbj|BAC43904.1| ribosome binding factor A [Mycoplasma penetrans HF-2]
          Length = 116

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 43  SISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
           ++  V +S D  +A VYIS       D+++  +N    F R  + ++L NLR  P + F 
Sbjct: 37  TVHYVTLSKDKSIAKVYISCYDKTIIDKILKKINGASGFFRTILAKNL-NLRKAPAIVFL 95

Query: 103 YDTSLQSYWKLNALM 117
            D S+    ++N+L+
Sbjct: 96  NDESIDKIDEINSLL 110


>gi|58584793|ref|YP_198366.1| ribosome-binding factor A [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58419109|gb|AAW71124.1| Ribosome-binding factor A [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 114

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 62/112 (55%), Gaps = 10/112 (8%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP----LDV 66
           R L++   +R A+  V++    + ++ +++V+ IS+V +S DL+ A VYI L        
Sbjct: 6   RNLKIASVLRRAISKVLM----EGKVFNKNVV-ISDVKLSGDLKKADVYIVLSSLSKKKY 60

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
           + + V+  +N +   IR  I  S  +LR++P+L F+ D +  ++  ++ ++ 
Sbjct: 61  NINTVVDEINQSAWLIRKSI-LSYVDLRFIPKLVFKADLAFDNFVNISKILS 111


>gi|229824130|ref|ZP_04450199.1| hypothetical protein GCWU000282_01434 [Catonella morbi ATCC 51271]
 gi|229786484|gb|EEP22598.1| hypothetical protein GCWU000282_01434 [Catonella morbi ATCC 51271]
          Length = 119

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDR--VISALNCNIKFIRGRIGRSLRNLRYVPEL 99
           ++I++V ++ DL+ AT++ S   D +  R    + L      +R  +G+ L+ L   PE+
Sbjct: 33  VTITDVDLTGDLQQATIFYSTLSDKAGQRQKTEAGLKAVTGLVRSELGKVLK-LYKTPEI 91

Query: 100 RFRYDTSLQSYWKLNALM 117
           RF  D S+    +++ L+
Sbjct: 92  RFERDRSVDYGNRIDQLL 109


>gi|160940468|ref|ZP_02087813.1| hypothetical protein CLOBOL_05358 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437048|gb|EDP14815.1| hypothetical protein CLOBOL_05358 [Clostridium bolteae ATCC
           BAA-613]
          Length = 133

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  R+  EV+  L  +I       R+    + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRINMEVQRELSEIIRGGIKDPRI--HPMTSVVSVEVTPDLKFCKAYISVLGDE 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              +  I  L     ++R  + R + NLR  PEL+F  D S++
Sbjct: 61  EAGKSTIQGLKSAEGYVRRELARRV-NLRNTPELKFILDQSIE 102


>gi|197303048|ref|ZP_03168096.1| hypothetical protein RUMLAC_01775 [Ruminococcus lactaris ATCC
           29176]
 gi|197297903|gb|EDY32455.1| hypothetical protein RUMLAC_01775 [Ruminococcus lactaris ATCC
           29176]
          Length = 127

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  RV  EV+  L   IL    +D  ++  + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRVNAEVQRELSN-ILRAGIKDPRVA-PMTSVVAVEVAPDLKTCKAYISVLGDE 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              +  I  L     +IR  + R++ N+R  PE+RF  D S++
Sbjct: 61  KAQQDTIRGLQSAEGYIRRELARTI-NMRNTPEIRFIVDQSIE 102


>gi|189219876|ref|YP_001940517.1| Ribosome-binding factor A [Methylacidiphilum infernorum V4]
 gi|189186734|gb|ACD83919.1| Ribosome-binding factor A [Methylacidiphilum infernorum V4]
          Length = 116

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 8/99 (8%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRL-ISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
           RA+RV E +R  L +      FQ  + +   V++IS V  + DL+ A++++SL    +S 
Sbjct: 4   RAIRVSEVIRRELSFC-----FQREVELEGLVLTISSVETTADLKEASIFVSLFDASISD 58

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           + ++  LN +    +  IG+ L++ ++ P L F+ D SL
Sbjct: 59  ELLLDILNRHRSEWQRWIGKRLQS-KFTPRLTFKIDDSL 96


>gi|171913141|ref|ZP_02928611.1| ribosome-binding factor A [Verrucomicrobium spinosum DSM 4136]
          Length = 163

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 9/86 (10%)

Query: 41  VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRN---LRYV 96
           V++I EV ++ DL+   +Y+  L  + +   ++  LN N    RG I R L     L+  
Sbjct: 42  VVTIHEVDVTPDLKQCFIYVGILGKEHAAPNIVRKLNEN----RGLIQRELFKRVILKNS 97

Query: 97  PELRFRYDTSLQSYWKLNALM-CLPK 121
           P L F+YDTS++   ++ AL+  LP+
Sbjct: 98  PSLTFKYDTSIERGVRVLALIETLPE 123


>gi|118579400|ref|YP_900650.1| ribosome-binding factor A [Pelobacter propionicus DSM 2379]
 gi|166219384|sp|A1AMM2|RBFA_PELPD RecName: Full=Ribosome-binding factor A
 gi|118502110|gb|ABK98592.1| ribosome-binding factor A [Pelobacter propionicus DSM 2379]
          Length = 122

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R+ ++ E +   +   IL+    D  I    ++++ V +  DL +A +Y +   D   
Sbjct: 2   SKRSEKLAETIHETISS-ILSRGLNDPRIG--FVTLTAVDVVEDLSIARIYFTAIGDRDA 58

Query: 69  DRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +   A LN    ++R  +G+ L  +R++PEL F+YD S +   ++++++
Sbjct: 59  RKNSEAGLNSAKGYLRRELGKVL-TIRHIPELIFKYDESQEYGNRIDSIL 107


>gi|227551752|ref|ZP_03981801.1| ribosome-binding factor A [Enterococcus faecium TX1330]
 gi|257887087|ref|ZP_05666740.1| ribosome-binding factor A [Enterococcus faecium 1,141,733]
 gi|257895652|ref|ZP_05675305.1| ribosome-binding factor A [Enterococcus faecium Com12]
 gi|257898242|ref|ZP_05677895.1| ribosome-binding factor A [Enterococcus faecium Com15]
 gi|293377737|ref|ZP_06623926.1| ribosome-binding factor A [Enterococcus faecium PC4.1]
 gi|293570609|ref|ZP_06681660.1| ribosome-binding factor A [Enterococcus faecium E980]
 gi|227179057|gb|EEI60029.1| ribosome-binding factor A [Enterococcus faecium TX1330]
 gi|257823141|gb|EEV50073.1| ribosome-binding factor A [Enterococcus faecium 1,141,733]
 gi|257832217|gb|EEV58638.1| ribosome-binding factor A [Enterococcus faecium Com12]
 gi|257836154|gb|EEV61228.1| ribosome-binding factor A [Enterococcus faecium Com15]
 gi|291609280|gb|EFF38551.1| ribosome-binding factor A [Enterococcus faecium E980]
 gi|292643737|gb|EFF61858.1| ribosome-binding factor A [Enterococcus faecium PC4.1]
          Length = 115

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
           R  RVG+E+   +   IL  + +D  +    ++I++V ++ DL+ AT+Y S+  D++ + 
Sbjct: 5   RDRRVGQEILKEVN-AILRKKVRDPRVQD--VTITDVHVTGDLQQATIYYSILSDLASEK 61

Query: 70  -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            +    L+     IR  +G +L ++   PEL F  D S+
Sbjct: 62  KKAQEGLDKASGLIRRELGHNL-SIYKTPELSFELDESV 99


>gi|33519580|ref|NP_878412.1| ribosome-binding factor A (P15B protein) [Candidatus Blochmannia
           floridanus]
 gi|39931815|sp|Q7VQM2|RBFA_BLOFL RecName: Full=Ribosome-binding factor A
 gi|33517243|emb|CAD83626.1| ribosome-binding factor A (P15B protein) [Candidatus Blochmannia
           floridanus]
          Length = 117

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 15/114 (13%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
           R  R+ +E++   + +I++++  D  +   + +IS V +S DL+ A ++I+  LD +   
Sbjct: 8   RLQRISQEIQRK-VAIIIHHKVHDPRVG--LPTISGVQVSRDLKNAKIFITF-LDKNN-- 61

Query: 71  VISALNCNI-------KFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            I  +N +I        FIR  +  S+ NLR VP L F+YD SL+   K+  L+
Sbjct: 62  -IEEINFSILILQKASGFIRFLLANSM-NLRTVPVLLFKYDYSLKEGIKICKLI 113


>gi|225570598|ref|ZP_03779623.1| hypothetical protein CLOHYLEM_06700 [Clostridium hylemonae DSM
           15053]
 gi|225160611|gb|EEG73230.1| hypothetical protein CLOHYLEM_06700 [Clostridium hylemonae DSM
           15053]
          Length = 126

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MK ++ KN+R    V  EV+  L  +I       R+     +  +EV  + DL+    YI
Sbjct: 1   MKKRSIKNTR----VNTEVQRELSSIIRGGIKDPRVAPWTSVVAAEV--APDLKTCKAYI 54

Query: 61  SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
           S+  D    +  I  L     +IR  + R+L N+R  PE++F  D S++
Sbjct: 55  SVLGDEEAQKETIKGLQSAEGYIRRELARNL-NMRNTPEIKFILDQSIE 102


>gi|293115580|ref|ZP_06604543.1| ribosome-binding factor A [Butyrivibrio crossotus DSM 2876]
 gi|292808920|gb|EFF68125.1| ribosome-binding factor A [Butyrivibrio crossotus DSM 2876]
          Length = 112

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPDRVI 72
           RV  EV   L  +I  +E +D  I+  + S+  V ++ DL+    YIS+  D  S D  I
Sbjct: 3   RVNNEVLRELSNII-RSEIKDPRINP-MTSVVAVDVAPDLKTCKAYISVLGDKDSQDSTI 60

Query: 73  SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
           + L     +IR  + +++ NLR  PE+ F  D S++
Sbjct: 61  TGLKSAASYIRTLLAKTV-NLRNTPEITFILDQSIE 95


>gi|118594127|ref|ZP_01551474.1| ribosome-binding factor A [Methylophilales bacterium HTCC2181]
 gi|118439905|gb|EAV46532.1| ribosome-binding factor A [Methylophilales bacterium HTCC2181]
          Length = 111

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 62/111 (55%), Gaps = 5/111 (4%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           K+  R+ R+ ++++  L   +L  E +D  +++  I+I +V +S  L+ A V+  +  + 
Sbjct: 3   KDYPRSDRIRQQIKKELAN-LLQKEVKDPSLNQ--ITILDVDVSPCLKHAKVFF-VSQEE 58

Query: 67  SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           + + V+  L  ++ F+R ++ + +   R +P+L F YD S+    K++ L+
Sbjct: 59  ASEEVMKGLARSMPFLRSQLAKRM-TTRGIPKLHFVYDKSIDESIKISKLL 108


>gi|283797341|ref|ZP_06346494.1| ribosome-binding factor A [Clostridium sp. M62/1]
 gi|291075013|gb|EFE12377.1| ribosome-binding factor A [Clostridium sp. M62/1]
 gi|295090491|emb|CBK76598.1| ribosome-binding factor A [Clostridium cf. saccharolyticum K10]
 gi|295115415|emb|CBL36262.1| ribosome-binding factor A [butyrate-producing bacterium SM4/1]
          Length = 143

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           KNS +  R+  EV+  L  +I + E +D  I   + ++  V ++ DL+    YIS L  +
Sbjct: 16  KNSIKNTRINSEVQRELSEII-SREIKDPRI-HPMTTVVAVEVTPDLKYCKAYISVLGSE 73

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            +    I  L     F+R ++   + NLR  PE+ F  D S++    +  L+
Sbjct: 74  EAGKETIKGLKSAEGFVRRQLASRI-NLRNTPEITFVLDQSIEYGVNMTHLI 124


>gi|226323227|ref|ZP_03798745.1| hypothetical protein COPCOM_00999 [Coprococcus comes ATCC 27758]
 gi|225208417|gb|EEG90771.1| hypothetical protein COPCOM_00999 [Coprococcus comes ATCC 27758]
          Length = 123

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  RV  EV+  L   IL    +D  ++  + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRVNAEVQREL-STILRGGIKDPRVA-PMTSVVAVEVAPDLKTCKAYISVLGDE 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
                 +  L     +IR  +  +L N+R  PE++F  D S++
Sbjct: 61  KAQADTLKGLQSAEGYIRRELAHTL-NMRNTPEIKFVLDQSIE 102


>gi|120597901|ref|YP_962475.1| ribosome-binding factor A [Shewanella sp. W3-18-1]
 gi|146293927|ref|YP_001184351.1| ribosome-binding factor A [Shewanella putrefaciens CN-32]
 gi|166219405|sp|A4Y9B9|RBFA_SHEPC RecName: Full=Ribosome-binding factor A
 gi|166219407|sp|A1RGX6|RBFA_SHESW RecName: Full=Ribosome-binding factor A
 gi|120557994|gb|ABM23921.1| ribosome-binding factor A [Shewanella sp. W3-18-1]
 gi|145565617|gb|ABP76552.1| ribosome-binding factor A [Shewanella putrefaciens CN-32]
          Length = 149

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
           +++++V +S DL  A V+++       D+ +     +AL     +IR  +   ++ LR +
Sbjct: 35  VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 90

Query: 97  PELRFRYDTSLQSYWKLNALMC 118
           PELRF YD+SL    +++ L+ 
Sbjct: 91  PELRFVYDSSLVEGMRMSNLVS 112


>gi|325661691|ref|ZP_08150314.1| ribosome-binding factor A [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471944|gb|EGC75159.1| ribosome-binding factor A [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 119

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
           KNS +  RV  EV+  L   IL +  +D  ++  + S+  V ++ DL+    YIS+  D 
Sbjct: 3   KNSIKNTRVNMEVQRELSS-ILRDGIKDPRVA-PMTSVVAVEVAPDLKTCKAYISVLGDE 60

Query: 67  SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
              +  ++ L     +IR  +   L N+R  PE++F  D S++
Sbjct: 61  KAQQDTVAGLQSAEGYIRRELAHRL-NMRNTPEVKFVLDQSIE 102


>gi|319427304|gb|ADV55378.1| ribosome-binding factor A [Shewanella putrefaciens 200]
          Length = 149

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
           +++++V +S DL  A V+++       D+ +     +AL     +IR  +   ++ LR +
Sbjct: 35  VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 90

Query: 97  PELRFRYDTSLQSYWKLNALMC 118
           PELRF YD+SL    +++ L+ 
Sbjct: 91  PELRFVYDSSLVEGMRMSNLVS 112


>gi|160876522|ref|YP_001555838.1| ribosome-binding factor A [Shewanella baltica OS195]
 gi|160862044|gb|ABX50578.1| ribosome-binding factor A [Shewanella baltica OS195]
          Length = 157

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
           +++++V +S DL  A V+++       D+ +     +AL     +IR  +   ++ LR +
Sbjct: 40  VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 95

Query: 97  PELRFRYDTSLQSYWKLNALMC 118
           PELRF YD+SL    +++ L+ 
Sbjct: 96  PELRFIYDSSLVEGMRMSNLVS 117


>gi|126175438|ref|YP_001051587.1| ribosome-binding factor A [Shewanella baltica OS155]
 gi|153001788|ref|YP_001367469.1| ribosome-binding factor A [Shewanella baltica OS185]
 gi|217972316|ref|YP_002357067.1| ribosome-binding factor A [Shewanella baltica OS223]
 gi|125998643|gb|ABN62718.1| ribosome-binding factor A [Shewanella baltica OS155]
 gi|151366406|gb|ABS09406.1| ribosome-binding factor A [Shewanella baltica OS185]
 gi|217497451|gb|ACK45644.1| ribosome-binding factor A [Shewanella baltica OS223]
          Length = 157

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
           +++++V +S DL  A V+++       D+ +     +AL     +IR  +   ++ LR +
Sbjct: 40  VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 95

Query: 97  PELRFRYDTSLQSYWKLNALMC 118
           PELRF YD+SL    +++ L+ 
Sbjct: 96  PELRFIYDSSLVEGMRMSNLVS 117


>gi|189039674|sp|A9KZX0|RBFA_SHEB9 RecName: Full=Ribosome-binding factor A
 gi|315268716|gb|ADT95569.1| ribosome-binding factor A [Shewanella baltica OS678]
          Length = 152

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
           +++++V +S DL  A V+++       D+ +     +AL     +IR  +   ++ LR +
Sbjct: 35  VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 90

Query: 97  PELRFRYDTSLQSYWKLNALMC 118
           PELRF YD+SL    +++ L+ 
Sbjct: 91  PELRFIYDSSLVEGMRMSNLVS 112


>gi|172044106|sp|A3D7K5|RBFA_SHEB5 RecName: Full=Ribosome-binding factor A
 gi|172044119|sp|A6WRG7|RBFA_SHEB8 RecName: Full=Ribosome-binding factor A
          Length = 152

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)

Query: 42  ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
           +++++V +S DL  A V+++       D+ +     +AL     +IR  +   ++ LR +
Sbjct: 35  VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 90

Query: 97  PELRFRYDTSLQSYWKLNALMC 118
           PELRF YD+SL    +++ L+ 
Sbjct: 91  PELRFIYDSSLVEGMRMSNLVS 112


Searching..................................................done


Results from round 2




>gi|148560113|ref|YP_001259960.1| ribosome-binding factor A [Brucella ovis ATCC 25840]
 gi|225626531|ref|ZP_03784570.1| ribosome-binding factor A [Brucella ceti str. Cudo]
 gi|237816506|ref|ZP_04595499.1| ribosome-binding factor A [Brucella abortus str. 2308 A]
 gi|148371370|gb|ABQ61349.1| ribosome-binding factor A [Brucella ovis ATCC 25840]
 gi|225618188|gb|EEH15231.1| ribosome-binding factor A [Brucella ceti str. Cudo]
 gi|237788573|gb|EEP62788.1| ribosome-binding factor A [Brucella abortus str. 2308 A]
          Length = 197

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 61  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 120

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L  
Sbjct: 121 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 180


>gi|254780786|ref|YP_003065199.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040463|gb|ACT57259.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 128

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI
Sbjct: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
           SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP
Sbjct: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120

Query: 121 KIPVALEK 128
           KIPVALEK
Sbjct: 121 KIPVALEK 128


>gi|326539882|gb|ADZ88097.1| ribosome-binding factor A [Brucella melitensis M5-90]
          Length = 197

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 61  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 120

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L  
Sbjct: 121 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSH 180


>gi|326410164|gb|ADZ67229.1| ribosome-binding factor A [Brucella melitensis M28]
          Length = 192

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 56  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 115

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L  
Sbjct: 116 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSH 175


>gi|297247390|ref|ZP_06931108.1| ribosome-binding factor A [Brucella abortus bv. 5 str. B3196]
 gi|297174559|gb|EFH33906.1| ribosome-binding factor A [Brucella abortus bv. 5 str. B3196]
          Length = 171

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 35  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 94

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L  
Sbjct: 95  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 154


>gi|163757751|ref|ZP_02164840.1| ribosome-binding factor A [Hoeflea phototrophica DFL-43]
 gi|162285253|gb|EDQ35535.1| ribosome-binding factor A [Hoeflea phototrophica DFL-43]
          Length = 148

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/127 (43%), Positives = 82/127 (64%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K      S+R LRVGE+VR+A+  V+   + +D ++S  +IS++EV MS DL+VAT Y++
Sbjct: 3   KPTTSAPSQRMLRVGEQVRAAITQVLQRGDIRDPILSNTLISVTEVRMSPDLQVATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                     I+ALN N +FIRGRI   LR +R +PELRFR DTS ++Y K++AL+  P+
Sbjct: 63  PLGVEDHAATIAALNKNARFIRGRISPDLRQMRNIPELRFRDDTSFENYSKIDALLRSPE 122

Query: 122 IPVALEK 128
           +   L+ 
Sbjct: 123 VARDLDH 129


>gi|23503014|ref|NP_699141.1| ribosome-binding factor A [Brucella suis 1330]
 gi|62291003|ref|YP_222796.1| ribosome-binding factor A [Brucella abortus bv. 1 str. 9-941]
 gi|82700912|ref|YP_415486.1| ribosome-binding factor A [Brucella melitensis biovar Abortus 2308]
 gi|161620074|ref|YP_001593961.1| ribosome-binding factor A [Brucella canis ATCC 23365]
 gi|189025215|ref|YP_001935983.1| ribosome-binding factor A [Brucella abortus S19]
 gi|254690297|ref|ZP_05153551.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
 gi|254694785|ref|ZP_05156613.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
 gi|254696413|ref|ZP_05158241.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700797|ref|ZP_05162625.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
 gi|254705165|ref|ZP_05166993.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
 gi|254707319|ref|ZP_05169147.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
 gi|254709141|ref|ZP_05170952.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
 gi|254718204|ref|ZP_05180015.1| ribosome-binding factor A [Brucella sp. 83/13]
 gi|254731326|ref|ZP_05189904.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
 gi|256030666|ref|ZP_05444280.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
 gi|256158667|ref|ZP_05456550.1| ribosome-binding factor A [Brucella ceti M490/95/1]
 gi|256254071|ref|ZP_05459607.1| ribosome-binding factor A [Brucella ceti B1/94]
 gi|256258550|ref|ZP_05464086.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
 gi|256370561|ref|YP_003108072.1| ribosome-binding factor A [Brucella microti CCM 4915]
 gi|260169570|ref|ZP_05756381.1| ribosome-binding factor A [Brucella sp. F5/99]
 gi|260546266|ref|ZP_05822006.1| ribosome-binding factor A [Brucella abortus NCTC 8038]
 gi|260567367|ref|ZP_05837837.1| ribosome-binding factor A [Brucella suis bv. 4 str. 40]
 gi|260755837|ref|ZP_05868185.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
 gi|260759060|ref|ZP_05871408.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
 gi|260760785|ref|ZP_05873128.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884862|ref|ZP_05896476.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
 gi|261215112|ref|ZP_05929393.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
 gi|261221212|ref|ZP_05935493.1| ribosome-binding factor A [Brucella ceti B1/94]
 gi|261314801|ref|ZP_05953998.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
 gi|261316640|ref|ZP_05955837.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
 gi|261751305|ref|ZP_05995014.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
 gi|261755870|ref|ZP_05999579.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
 gi|261759097|ref|ZP_06002806.1| ribosome-binding factor A [Brucella sp. F5/99]
 gi|265983161|ref|ZP_06095896.1| ribosome-binding factor A [Brucella sp. 83/13]
 gi|265987712|ref|ZP_06100269.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
 gi|265997173|ref|ZP_06109730.1| ribosome-binding factor A [Brucella ceti M490/95/1]
 gi|294851391|ref|ZP_06792064.1| ribosome-binding factor A [Brucella sp. NVSL 07-0026]
 gi|306839944|ref|ZP_07472738.1| ribosome-binding factor A [Brucella sp. NF 2653]
 gi|306843583|ref|ZP_07476184.1| ribosome-binding factor A [Brucella sp. BO1]
 gi|29427805|sp|Q8FXT1|RBFA_BRUSU RecName: Full=Ribosome-binding factor A
 gi|75496017|sp|Q57A99|RBFA_BRUAB RecName: Full=Ribosome-binding factor A
 gi|123547259|sp|Q2YQR6|RBFA_BRUA2 RecName: Full=Ribosome-binding factor A
 gi|172048298|sp|A5VTB3|RBFA_BRUO2 RecName: Full=Ribosome-binding factor A
 gi|189039529|sp|A9M9Z5|RBFA_BRUC2 RecName: Full=Ribosome-binding factor A
 gi|238689419|sp|B2S9F7|RBFA_BRUA1 RecName: Full=Ribosome-binding factor A
 gi|23349055|gb|AAN31056.1| ribosome-binding factor A [Brucella suis 1330]
 gi|62197135|gb|AAX75435.1| RbfA, ribosome-binding factor A [Brucella abortus bv. 1 str. 9-941]
 gi|82617013|emb|CAJ12122.1| Ribosome-binding factor A [Brucella melitensis biovar Abortus 2308]
 gi|161336885|gb|ABX63190.1| ribosome-binding factor A [Brucella canis ATCC 23365]
 gi|189020787|gb|ACD73509.1| Ribosome-binding factor A [Brucella abortus S19]
 gi|256000724|gb|ACU49123.1| ribosome-binding factor A [Brucella microti CCM 4915]
 gi|260096373|gb|EEW80249.1| ribosome-binding factor A [Brucella abortus NCTC 8038]
 gi|260156885|gb|EEW91965.1| ribosome-binding factor A [Brucella suis bv. 4 str. 40]
 gi|260669378|gb|EEX56318.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
 gi|260671217|gb|EEX58038.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675945|gb|EEX62766.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
 gi|260874390|gb|EEX81459.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
 gi|260916719|gb|EEX83580.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
 gi|260919796|gb|EEX86449.1| ribosome-binding factor A [Brucella ceti B1/94]
 gi|261295863|gb|EEX99359.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
 gi|261303827|gb|EEY07324.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
 gi|261739081|gb|EEY27077.1| ribosome-binding factor A [Brucella sp. F5/99]
 gi|261741058|gb|EEY28984.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
 gi|261745623|gb|EEY33549.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
 gi|262551641|gb|EEZ07631.1| ribosome-binding factor A [Brucella ceti M490/95/1]
 gi|264659909|gb|EEZ30170.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
 gi|264661753|gb|EEZ32014.1| ribosome-binding factor A [Brucella sp. 83/13]
 gi|294819980|gb|EFG36979.1| ribosome-binding factor A [Brucella sp. NVSL 07-0026]
 gi|306276274|gb|EFM57974.1| ribosome-binding factor A [Brucella sp. BO1]
 gi|306404908|gb|EFM61193.1| ribosome-binding factor A [Brucella sp. NF 2653]
          Length = 150

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 14  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L  
Sbjct: 74  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 133


>gi|17988247|ref|NP_540881.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
 gi|17984014|gb|AAL53145.1| ribosome-binding factor a [Brucella melitensis bv. 1 str. 16M]
          Length = 171

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 35  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 94

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L  
Sbjct: 95  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSH 154


>gi|254713434|ref|ZP_05175245.1| ribosome-binding factor A [Brucella ceti M644/93/1]
 gi|254716209|ref|ZP_05178020.1| ribosome-binding factor A [Brucella ceti M13/05/1]
 gi|261217983|ref|ZP_05932264.1| ribosome-binding factor A [Brucella ceti M13/05/1]
 gi|261321167|ref|ZP_05960364.1| ribosome-binding factor A [Brucella ceti M644/93/1]
 gi|260923072|gb|EEX89640.1| ribosome-binding factor A [Brucella ceti M13/05/1]
 gi|261293857|gb|EEX97353.1| ribosome-binding factor A [Brucella ceti M644/93/1]
          Length = 150

 Score =  168 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 14  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L  
Sbjct: 74  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 133


>gi|239833214|ref|ZP_04681543.1| ribosome-binding factor A [Ochrobactrum intermedium LMG 3301]
 gi|239825481|gb|EEQ97049.1| ribosome-binding factor A [Ochrobactrum intermedium LMG 3301]
          Length = 171

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/118 (49%), Positives = 79/118 (66%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI+R VIS+SEV MS DL++AT +I+   D   
Sbjct: 35  SQRQLRVGEQVRHALAQVLQRGEIRDDLIARTVISVSEVRMSPDLKIATCFITPLGDADT 94

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
             VI AL  N KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L
Sbjct: 95  QAVIKALAANAKFIRGRMAPSLSQMKYMPEFRFRADTSFDNFSKIDALLRSPEVARDL 152


>gi|163844179|ref|YP_001628584.1| ribosome-binding factor A [Brucella suis ATCC 23445]
 gi|189039530|sp|B0CK12|RBFA_BRUSI RecName: Full=Ribosome-binding factor A
 gi|163674902|gb|ABY39013.1| ribosome-binding factor A [Brucella suis ATCC 23445]
          Length = 150

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/120 (46%), Positives = 77/120 (64%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR  L  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 14  SQRQLRVGEQVRHTLAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L  
Sbjct: 74  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 133


>gi|15887440|ref|NP_353121.1| ribosome-binding factor A [Agrobacterium tumefaciens str. C58]
 gi|22096033|sp|Q8UJ52|RBFA_AGRT5 RecName: Full=Ribosome-binding factor A
 gi|15154953|gb|AAK85906.1| ribosome-binding factor A [Agrobacterium tumefaciens str. C58]
          Length = 138

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/125 (47%), Positives = 83/125 (66%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K  +   S+R LRVGE+VR+AL  ++   E +D LI   VISISEV MS DL++AT Y++
Sbjct: 3   KATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    +ISALN + KF+RGR+G  LR ++Y+PELRFR DTS  +Y K++AL+  P+
Sbjct: 63  PLGVADHTDIISALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPE 122

Query: 122 IPVAL 126
           +   L
Sbjct: 123 VQRDL 127


>gi|325291530|ref|YP_004277394.1| Ribosome-binding factor A [Agrobacterium sp. H13-3]
 gi|325059383|gb|ADY63074.1| Ribosome-binding factor A [Agrobacterium sp. H13-3]
          Length = 138

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/125 (46%), Positives = 83/125 (66%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K  +   S+R LRVGE+VR+AL  ++   E +D LI   VISISEV MS DL++AT Y++
Sbjct: 3   KATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    +I+ALN + KF+RGR+G  LR ++Y+PELRFR DTS  +Y K++AL+  P+
Sbjct: 63  PLGVADHTDIITALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPE 122

Query: 122 IPVAL 126
           +   L
Sbjct: 123 VQRDL 127


>gi|225853591|ref|YP_002733824.1| ribosome-binding factor A [Brucella melitensis ATCC 23457]
 gi|256045769|ref|ZP_05448647.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112489|ref|ZP_05453410.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
 gi|256264966|ref|ZP_05467498.1| ribosome-binding factor A [Brucella melitensis bv. 2 str. 63/9]
 gi|260563065|ref|ZP_05833551.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
 gi|265992186|ref|ZP_06104743.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993925|ref|ZP_06106482.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
 gi|20978585|sp|Q8YEB4|RBFA_BRUME RecName: Full=Ribosome-binding factor A
 gi|254789736|sp|C0RG48|RBFA_BRUMB RecName: Full=Ribosome-binding factor A
 gi|225641956|gb|ACO01870.1| ribosome-binding factor A [Brucella melitensis ATCC 23457]
 gi|260153081|gb|EEW88173.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
 gi|262764906|gb|EEZ10827.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
 gi|263003252|gb|EEZ15545.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095449|gb|EEZ19050.1| ribosome-binding factor A [Brucella melitensis bv. 2 str. 63/9]
          Length = 150

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 14  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L  
Sbjct: 74  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSH 133


>gi|256060126|ref|ZP_05450308.1| ribosome-binding factor A [Brucella neotomae 5K33]
 gi|261324103|ref|ZP_05963300.1| ribosome-binding factor A [Brucella neotomae 5K33]
 gi|261300083|gb|EEY03580.1| ribosome-binding factor A [Brucella neotomae 5K33]
          Length = 150

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI R VIS+SEV MS DL++AT +I+      P
Sbjct: 14  SQRQLRVGEQVRHALAQVLQRGEIRDDLIERIVISVSEVRMSPDLKIATCFIAPLGSADP 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
             VI AL  + KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L  
Sbjct: 74  QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 133


>gi|114706047|ref|ZP_01438950.1| ribosome-binding factor A [Fulvimarina pelagi HTCC2506]
 gi|114538893|gb|EAU42014.1| ribosome-binding factor A [Fulvimarina pelagi HTCC2506]
          Length = 140

 Score =  166 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 53/126 (42%), Positives = 80/126 (63%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
             N   S+R L VGE+VR AL  V+   E +D L+ R V+S+SEV MS DL++AT Y+++
Sbjct: 5   KPNAGPSQRQLSVGEKVRHALTEVMQRGEIRDPLLERAVVSVSEVRMSPDLKIATAYVTV 64

Query: 63  PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
                    I ALN + KFIRGR+  SL+ ++Y+PE+RFR DTS  ++ +++AL+  P++
Sbjct: 65  LGQEDMQPFIKALNDHAKFIRGRVTPSLKQMKYMPEIRFREDTSFDNFARIDALLKSPEV 124

Query: 123 PVALEK 128
              L  
Sbjct: 125 QQDLNH 130


>gi|15963993|ref|NP_384346.1| ribosome-binding factor A [Sinorhizobium meliloti 1021]
 gi|307306405|ref|ZP_07586149.1| ribosome-binding factor A [Sinorhizobium meliloti BL225C]
 gi|307319292|ref|ZP_07598721.1| ribosome-binding factor A [Sinorhizobium meliloti AK83]
 gi|20978620|sp|Q92SW3|RBFA_RHIME RecName: Full=Ribosome-binding factor A
 gi|15073169|emb|CAC41677.1| Probable ribosome-binding factor A, rRNA processing protein
           [Sinorhizobium meliloti 1021]
 gi|306895128|gb|EFN25885.1| ribosome-binding factor A [Sinorhizobium meliloti AK83]
 gi|306902247|gb|EFN32844.1| ribosome-binding factor A [Sinorhizobium meliloti BL225C]
          Length = 135

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 57/127 (44%), Positives = 84/127 (66%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K+ +   S+R LRVGE+VR+A+  V+   E  D LI   VISISEV MS DL++AT Y++
Sbjct: 3   KSTSSAPSQRMLRVGEQVRAAITQVLQRGEVLDPLIENTVISISEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    VI ALN + KFIRGR+G  LR ++Y+P++RFR DTS  +Y K+++L+  P+
Sbjct: 63  PLGVADHAAVIEALNKHAKFIRGRLGPQLRQMKYMPDVRFRDDTSFDNYQKIDSLLRSPE 122

Query: 122 IPVALEK 128
           +   L++
Sbjct: 123 VSRDLDR 129


>gi|153008082|ref|YP_001369297.1| ribosome-binding factor A [Ochrobactrum anthropi ATCC 49188]
 gi|166219382|sp|A6WWW4|RBFA_OCHA4 RecName: Full=Ribosome-binding factor A
 gi|151559970|gb|ABS13468.1| ribosome-binding factor A [Ochrobactrum anthropi ATCC 49188]
          Length = 150

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 56/118 (47%), Positives = 78/118 (66%)

Query: 9   SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
           S+R LRVGE+VR AL  V+   E +D LI+  VIS+SEV MS DL++AT +I+   +   
Sbjct: 14  SQRQLRVGEQVRHALAQVLQRGEIRDDLIAHTVISVSEVRMSPDLKIATCFITPLGNADT 73

Query: 69  DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
             VI AL  N KFIRGR+  SL  ++Y+PE RFR DTS  ++ K++AL+  P++   L
Sbjct: 74  QAVIKALAANAKFIRGRMAPSLSQMKYMPEFRFRADTSFDNFSKIDALLRSPEVARDL 131


>gi|227824072|ref|YP_002828045.1| ribosome-binding factor A [Sinorhizobium fredii NGR234]
 gi|254789759|sp|C3MC67|RBFA_RHISN RecName: Full=Ribosome-binding factor A
 gi|227343074|gb|ACP27292.1| ribosome-binding factor A [Sinorhizobium fredii NGR234]
          Length = 135

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/126 (45%), Positives = 85/126 (67%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           ++ +   S+R LRVGE+VR+A+  V+   E +D LI + VISISEV MS DL++AT Y++
Sbjct: 3   RSTSSAPSQRMLRVGEQVRAAITQVLQRGEVRDPLIEKTVISISEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    VI ALN + KFIRGR+G  LR ++Y+P++RFR DTS  +Y K++AL+  P+
Sbjct: 63  PLGVADHAAVIEALNKHAKFIRGRLGPQLRQMKYMPDVRFRDDTSFDNYQKIDALLRSPE 122

Query: 122 IPVALE 127
           +   L+
Sbjct: 123 VSRDLD 128


>gi|298293851|ref|YP_003695790.1| ribosome-binding factor A [Starkeya novella DSM 506]
 gi|296930362|gb|ADH91171.1| ribosome-binding factor A [Starkeya novella DSM 506]
          Length = 141

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 4/131 (3%)

Query: 1   MKNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT 57
           MKN+       S+R LRVGE VR AL  ++   +  D  +S+ +I++ EV MS DL++AT
Sbjct: 1   MKNRASSGSGPSQRQLRVGELVRHALAEILARGDLPDPALSKVMITVPEVRMSPDLKIAT 60

Query: 58  VYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
            Y+           I AL  N K +RG I R +  L++VPELRFR DTS +   +++AL+
Sbjct: 61  CYVMPLGGKDHKAAIDALATNAKPLRGEIARRV-ELKFVPELRFRIDTSFEEGDRIDALL 119

Query: 118 CLPKIPVALEK 128
             P++   L+K
Sbjct: 120 RSPQVQRDLDK 130


>gi|260461979|ref|ZP_05810224.1| ribosome-binding factor A [Mesorhizobium opportunistum WSM2075]
 gi|259032226|gb|EEW33492.1| ribosome-binding factor A [Mesorhizobium opportunistum WSM2075]
          Length = 156

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/126 (40%), Positives = 79/126 (62%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           ++     S+R LRVGE+VR AL   +   +  D LI   V+S+SEV MS DL++AT ++S
Sbjct: 3   RSTTSGPSQRMLRVGEQVRHALSETLQRGDIIDPLIENSVVSVSEVRMSPDLKIATAFVS 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                  + VI ALN + KF+RGR+  +LR ++Y+PE RFR DTS  ++ ++N L+  P+
Sbjct: 63  PLGAKDAEAVIEALNKHAKFVRGRVSGALRQMKYMPEFRFRLDTSFDNFARINDLLKSPE 122

Query: 122 IPVALE 127
           +   L+
Sbjct: 123 VARDLD 128


>gi|319406544|emb|CBI80186.1| Ribosome-binding factor A [Bartonella sp. 1-1C]
          Length = 137

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 3/127 (2%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           KNP  S+R LRVGE+VR A+  ++      D +    VIS+SEV MS DL++AT ++S  
Sbjct: 2   KNPHPSQRQLRVGEQVRHAIAHILQRGILLDDIFKNIVISVSEVRMSSDLKIATCFVSFL 61

Query: 64  LDVSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
             V     D +ISALN N +FIRG I   LR ++Y+P LRFR+D S  ++ K++ L+  P
Sbjct: 62  NTVDQTSHDAIISALNKNSRFIRGAISHQLRQMKYMPALRFRFDNSFDNFAKIDTLLRSP 121

Query: 121 KIPVALE 127
           ++   L 
Sbjct: 122 EVARDLH 128


>gi|150398628|ref|YP_001329095.1| ribosome-binding factor A [Sinorhizobium medicae WSM419]
 gi|166219408|sp|A6UF30|RBFA_SINMW RecName: Full=Ribosome-binding factor A
 gi|150030143|gb|ABR62260.1| ribosome-binding factor A [Sinorhizobium medicae WSM419]
          Length = 134

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/127 (44%), Positives = 86/127 (67%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K+ +   S+R LRVGE+VR+A+  V+   + +D LI   VISISEV MS DL++AT Y++
Sbjct: 3   KSTSSAPSQRMLRVGEQVRAAITQVLQRGDVRDPLIESTVISISEVRMSPDLKLATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    VI ALN + KFIRGR+G  LR ++Y+P++RFR DTS ++Y K+++L+  P+
Sbjct: 63  PLGVADHAAVIEALNKHAKFIRGRLGPHLRQMKYMPDVRFRDDTSFENYQKIDSLLRSPE 122

Query: 122 IPVALEK 128
           +   L++
Sbjct: 123 VSRDLDR 129


>gi|319779768|ref|YP_004139244.1| ribosome-binding factor A [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317165656|gb|ADV09194.1| ribosome-binding factor A [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 146

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 50/125 (40%), Positives = 76/125 (60%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +      S+R LRV E+VR AL   +   E  D LI   V+S+SEV MS DL+VAT ++S
Sbjct: 3   RPTASSPSQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLKVATAFVS 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                  D V+ ALN + KF+RGR+  +LR ++++PE RF+ DTS  ++ ++N L+  P+
Sbjct: 63  PLGAKDTDAVVEALNKHAKFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPE 122

Query: 122 IPVAL 126
           +   L
Sbjct: 123 VARDL 127


>gi|315122008|ref|YP_004062497.1| ribosome-binding factor A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495410|gb|ADR52009.1| ribosome-binding factor A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 132

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 98/126 (77%), Positives = 109/126 (86%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKNK+   SRRALRVGEEVRSALMWVILNNEFQD LI RD+ISISEVCMSVDLRVATVY+
Sbjct: 1   MKNKSSVPSRRALRVGEEVRSALMWVILNNEFQDNLIHRDIISISEVCMSVDLRVATVYV 60

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
           SLP DVSPD VI AL CN KF+RGRI +SLRNL+Y+PELRFRYDTSLQ+YWK++ LMC  
Sbjct: 61  SLPPDVSPDVVIDALKCNNKFLRGRISQSLRNLKYIPELRFRYDTSLQNYWKIDTLMCSS 120

Query: 121 KIPVAL 126
           K+   L
Sbjct: 121 KVVRDL 126


>gi|49475026|ref|YP_033067.1| ribosome-binding factor A [Bartonella henselae str. Houston-1]
 gi|61215011|sp|Q6G4W8|RBFA_BARHE RecName: Full=Ribosome-binding factor A
 gi|49237831|emb|CAF27026.1| Ribosomal-binding factor A [Bartonella henselae str. Houston-1]
          Length = 135

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 52/128 (40%), Positives = 79/128 (61%), Gaps = 3/128 (2%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           KN + S+R LRVGE+VR A+  ++      D L+   VIS+ EV MS DL++A  ++S  
Sbjct: 2   KNAEPSQRQLRVGEQVRHAVAHILQQGILLDNLLKNMVISVVEVRMSPDLKIAICFVSPL 61

Query: 64  L---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
               + S   V++ALN + +FIRG I  SLR ++Y+PELRFR D S  ++ K++AL+  P
Sbjct: 62  STVHNASRADVVNALNKHSRFIRGEISHSLRQMKYMPELRFRLDNSFDNFSKIDALLRSP 121

Query: 121 KIPVALEK 128
           ++   L  
Sbjct: 122 EVARDLHH 129


>gi|163867510|ref|YP_001608709.1| ribosome-binding factor A [Bartonella tribocorum CIP 105476]
 gi|189039527|sp|A9IMT2|RBFA_BART1 RecName: Full=Ribosome-binding factor A
 gi|161017156|emb|CAK00714.1| Ribosome-binding factor A [Bartonella tribocorum CIP 105476]
          Length = 135

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 5/131 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKN  P  S+R LRV E+VR A+  ++      D ++   VIS+SEV +S DL++AT ++
Sbjct: 1   MKNAGP--SQRQLRVAEQVRHAVAHILQRGILLDDVLKDIVISVSEVRISPDLKIATCFV 58

Query: 61  SLPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S      + S   V++ LN + +F+RG I  +LR ++Y+PELRFR D S  ++ K++AL+
Sbjct: 59  SPLSTLKNTSHTDVVNTLNKHSRFLRGEISHALRQMKYMPELRFRLDNSFDNFSKIDALL 118

Query: 118 CLPKIPVALEK 128
             P++   L  
Sbjct: 119 RSPEVARDLHH 129


>gi|90422005|ref|YP_530375.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB18]
 gi|122477505|sp|Q21C30|RBFA_RHOPB RecName: Full=Ribosome-binding factor A
 gi|90104019|gb|ABD86056.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB18]
          Length = 137

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
            K ++P  S+R LRVGE VR A+  ++      D ++   +I++ EV MS DL++ATVY+
Sbjct: 6   QKAQSPGGSQRQLRVGEIVRHAVAELLSQGGVHDPVLEGHLITVPEVRMSPDLKLATVYV 65

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
                   D V+ AL  N  FIR  + R + NL++ P+LRFR D       ++  L+  P
Sbjct: 66  MPLGGRDTDVVLKALAANKPFIRTAVARRV-NLKFAPDLRFRIDERFDEAERIEKLLRTP 124

Query: 121 KIPVALEK 128
            +   L++
Sbjct: 125 GVQKDLQQ 132


>gi|299133372|ref|ZP_07026567.1| ribosome-binding factor A [Afipia sp. 1NLS2]
 gi|298593509|gb|EFI53709.1| ribosome-binding factor A [Afipia sp. 1NLS2]
          Length = 140

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
           +     S+R LRVGE +R A+  ++      D  +S  +I++ EV MS DL++ATVY+  
Sbjct: 11  SGPAGGSQRQLRVGELIRHAISDILSQGGVHDDTLSGHIITVPEVRMSPDLKLATVYVMP 70

Query: 63  PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
                 D VI+AL  N KF+RG +   + NL++ P+LRFR D       ++  L+  P +
Sbjct: 71  LGGHDTDAVIAALAHNKKFLRGEVAHRV-NLKFAPDLRFRADERFDEAERIEKLLRTPAV 129

Query: 123 PVALEK 128
              L  
Sbjct: 130 QKDLNH 135


>gi|222147150|ref|YP_002548107.1| ribosome-binding factor A [Agrobacterium vitis S4]
 gi|254789726|sp|B9JYK7|RBFA_AGRVS RecName: Full=Ribosome-binding factor A
 gi|221734140|gb|ACM35103.1| ribosome-binding factor A [Agrobacterium vitis S4]
          Length = 137

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/125 (50%), Positives = 85/125 (68%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           K  N   S+R LRVGE+VR+A+  V+   E +D LI + VISISEV MS DL+VAT Y+S
Sbjct: 3   KPTNSAPSQRMLRVGEQVRAAITQVLQRGEVRDDLIEKTVISISEVRMSTDLKVATAYVS 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                  D VI+ALN + K+IRGRIG  LR ++Y+PE+RFR DTS  +Y K++AL+  P+
Sbjct: 63  PLGVSDHDTVIAALNRHAKYIRGRIGGQLRQMKYMPEVRFRDDTSFDNYQKIDALLRSPE 122

Query: 122 IPVAL 126
           +   L
Sbjct: 123 VARDL 127


>gi|115522224|ref|YP_779135.1| ribosome-binding factor A [Rhodopseudomonas palustris BisA53]
 gi|122298068|sp|Q07V79|RBFA_RHOP5 RecName: Full=Ribosome-binding factor A
 gi|115516171|gb|ABJ04155.1| ribosome-binding factor A [Rhodopseudomonas palustris BisA53]
          Length = 138

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
            KN   + S+R LRVGE VR A+  ++      D ++   ++++ EV MS DL++AT+Y+
Sbjct: 6   QKNSGREASQRQLRVGESVRHAIAEILAQGGVHDPVLEGHLVTVPEVRMSPDLKLATIYV 65

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
                   + V+ AL+ N KF+RG + R + NL++ PELRFR D       ++  L+  P
Sbjct: 66  MPLGGRDTELVLKALDHNKKFLRGEVSRRV-NLKFAPELRFRADDRFDEAERIEKLLRTP 124

Query: 121 KIPVALEK 128
            +   L+ 
Sbjct: 125 AVQRDLQH 132


>gi|319408010|emb|CBI81664.1| Ribosome-binding factor A [Bartonella schoenbuchensis R1]
          Length = 135

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/129 (41%), Positives = 81/129 (62%), Gaps = 5/129 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKN  P  S+R LRVGE+VR  L  ++  +   D ++   VISISEV MS DL++AT ++
Sbjct: 1   MKNTGP--SQRQLRVGEQVRHVLAHILQRDILLDDVLKGVVISISEVRMSADLKIATCFV 58

Query: 61  SLPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S      D+S   +I  LN + +FIR  I   LR ++Y+PELRFR+D+S  ++ K++AL+
Sbjct: 59  SPLSTIHDISHTAIIEVLNKHSRFIRKEISHQLRQMKYMPELRFRFDSSFDNFSKIDALL 118

Query: 118 CLPKIPVAL 126
             P++   L
Sbjct: 119 HSPEVARDL 127


>gi|240849880|ref|YP_002971268.1| ribosomal-binding factor A [Bartonella grahamii as4aup]
 gi|240267003|gb|ACS50591.1| ribosomal-binding factor A [Bartonella grahamii as4aup]
          Length = 135

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 80/128 (62%), Gaps = 3/128 (2%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           KN K S+R LRV E+VR A+  ++  +   D ++   VIS+SEV MS DL++AT ++S  
Sbjct: 2   KNAKPSQRQLRVAEQVRHAIAHILQRDILLDDILKDIVISVSEVRMSPDLKIATCFVSPL 61

Query: 64  L---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
               +VS   V+  LN + +F+RG I  +LR ++Y+PELRFR D S  ++ K++AL+  P
Sbjct: 62  STLKNVSHTDVVDTLNKHSRFLRGEISHALRQMKYMPELRFRLDNSFDNFSKIDALLRSP 121

Query: 121 KIPVALEK 128
           ++   L  
Sbjct: 122 EVARDLHH 129


>gi|39933512|ref|NP_945788.1| ribosome-binding factor A [Rhodopseudomonas palustris CGA009]
 gi|192288870|ref|YP_001989475.1| ribosome-binding factor A [Rhodopseudomonas palustris TIE-1]
 gi|61215050|sp|Q6NCN6|RBFA_RHOPA RecName: Full=Ribosome-binding factor A
 gi|229568643|sp|B3QAB3|RBFA_RHOPT RecName: Full=Ribosome-binding factor A
 gi|39647358|emb|CAE25879.1| putative ribosome-binding factor A [Rhodopseudomonas palustris
           CGA009]
 gi|192282619|gb|ACE98999.1| ribosome-binding factor A [Rhodopseudomonas palustris TIE-1]
          Length = 137

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 1/127 (0%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
            K+  P  S R+LRVGE +R A+  ++      D ++   ++++ EV MS DL++AT+Y+
Sbjct: 6   QKSSPPGGSTRSLRVGELIRHAVAEILAQGGVHDPVLESHLVTVPEVRMSPDLKLATIYV 65

Query: 61  SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
                     VI AL  + +F+RG I   + NL++ PELRFR D       +++ L+  P
Sbjct: 66  MPLGGRDEKLVIDALEHHKRFLRGEIAHRV-NLKFAPELRFRIDERFAEAERIDKLLRSP 124

Query: 121 KIPVALE 127
            +   LE
Sbjct: 125 AVQKDLE 131


>gi|218662345|ref|ZP_03518275.1| ribosome-binding factor A [Rhizobium etli IE4771]
 gi|218673741|ref|ZP_03523410.1| ribosome-binding factor A [Rhizobium etli GR56]
          Length = 134

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 82/126 (65%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +  +   S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++
Sbjct: 3   RPTSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    VI ALN + KFIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P+
Sbjct: 63  PLGVSDHSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122

Query: 122 IPVALE 127
           +   L+
Sbjct: 123 VSRDLD 128


>gi|190889784|ref|YP_001976326.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
           CIAT 652]
 gi|238692530|sp|B3PXE2|RBFA_RHIE6 RecName: Full=Ribosome-binding factor A
 gi|190695063|gb|ACE89148.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
           CIAT 652]
          Length = 134

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 82/126 (65%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +  +   S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++
Sbjct: 3   RPTSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    VI ALN + KFIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P+
Sbjct: 63  PLGVSDHSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122

Query: 122 IPVALE 127
           +   L+
Sbjct: 123 VSRDLD 128


>gi|49473869|ref|YP_031911.1| ribosome-binding factor A [Bartonella quintana str. Toulouse]
 gi|61215005|sp|Q6G0P3|RBFA_BARQU RecName: Full=Ribosome-binding factor A
 gi|49239372|emb|CAF25705.1| Ribosomal-binding factor A [Bartonella quintana str. Toulouse]
          Length = 135

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 83/131 (63%), Gaps = 5/131 (3%)

Query: 1   MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
           MKN  P  S+R LRVGE+VR A+ + +      D L+   VIS++EV MS DL++AT ++
Sbjct: 1   MKNAGP--SQRQLRVGEQVRHAVAYKLQQGILLDDLLKNIVISVAEVRMSPDLKIATCFV 58

Query: 61  SLPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
           S      +VSP  V++ LN + +FIR  I  SLR ++Y+PELRFR DTS  ++ K+++L+
Sbjct: 59  SSLSTLHNVSPTDVVNVLNKHSRFIRREISYSLRQMKYMPELRFRLDTSFDNFSKIDSLL 118

Query: 118 CLPKIPVALEK 128
             P++   L  
Sbjct: 119 RSPEVARDLHH 129


>gi|218461916|ref|ZP_03502007.1| ribosome-binding factor A [Rhizobium etli Kim 5]
          Length = 134

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 82/126 (65%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +  +   S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++
Sbjct: 3   RPTSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    VI ALN + KFIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P+
Sbjct: 63  PLGVSDHSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122

Query: 122 IPVALE 127
           +   L+
Sbjct: 123 VSRDLD 128


>gi|319403628|emb|CBI77213.1| Ribosome-binding factor A [Bartonella rochalimae ATCC BAA-1498]
          Length = 138

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 3/127 (2%)

Query: 4   KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
           KN   S+R LRVGE+VR A+  ++      D      VIS+SEV MS DL++AT ++S  
Sbjct: 3   KNIHPSQRQLRVGEQVRHAIAHILQRGVLLDDTFKNIVISVSEVRMSSDLKIATCFVSFL 62

Query: 64  LDVSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
             V     D ++SALN N +FIRG I   LR ++Y+P LRFR+D S  ++ K++ L+  P
Sbjct: 63  NTVDQTSHDAIVSALNKNSRFIRGAISHQLRQMKYMPALRFRFDNSFDNFAKIDTLLRSP 122

Query: 121 KIPVALE 127
           ++   L 
Sbjct: 123 EVARDLH 129


>gi|13474630|ref|NP_106199.1| ribosome-binding factor A [Mesorhizobium loti MAFF303099]
 gi|20978641|sp|Q98BI7|RBFA_RHILO RecName: Full=Ribosome-binding factor A
 gi|14025384|dbj|BAB51985.1| ribosome-binding factor A [Mesorhizobium loti MAFF303099]
          Length = 146

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/123 (40%), Positives = 75/123 (60%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +      S+R LRV E+VR AL   +   E  D LI   V+S+SEV MS DLRVAT ++S
Sbjct: 3   RPTTSSPSQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLRVATAFVS 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                  D V+ ALN + KF+RGR+  +LR ++++PE RF+ DTS  ++ ++N L+  P+
Sbjct: 63  PLGAKDTDAVVEALNKHAKFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPE 122

Query: 122 IPV 124
           +  
Sbjct: 123 VAR 125


>gi|218682086|ref|ZP_03529687.1| ribosome-binding factor A [Rhizobium etli CIAT 894]
          Length = 134

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 83/126 (65%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +  +   S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++
Sbjct: 3   RATSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    VI ALN + KFIRGR+G+ LR ++Y+PE+RFR DTS  +Y K++ L+  P+
Sbjct: 63  PLGVSDHSIVIGALNRHAKFIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122

Query: 122 IPVALE 127
           +   L+
Sbjct: 123 VRRDLD 128


>gi|182678032|ref|YP_001832178.1| ribosome-binding factor A [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|238691234|sp|B2IIJ6|RBFA_BEII9 RecName: Full=Ribosome-binding factor A
 gi|182633915|gb|ACB94689.1| ribosome-binding factor A [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 141

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 3   NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
            +    S+R LRV E +R  L  ++  +   D ++   VI++ +V MS DL++AT ++  
Sbjct: 7   QQGGAPSQRMLRVAELIRHTLSDLLSRSIVNDPVLEGHVITVPDVRMSPDLKLATAFVMP 66

Query: 63  PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
                 + VI AL+ + KF+R  I + + +LR+ P++RF+ D S     K++AL+  P++
Sbjct: 67  LGGKDINSVIEALDRHKKFLRSEIAQRI-HLRFAPDIRFKADESFDYGDKIDALLASPQV 125

Query: 123 PVALE 127
              L+
Sbjct: 126 RRDLD 130


>gi|116249890|ref|YP_765728.1| ribosome-binding factor A [Rhizobium leguminosarum bv. viciae 3841]
 gi|166219398|sp|Q1MN40|RBFA_RHIL3 RecName: Full=Ribosome-binding factor A
 gi|115254538|emb|CAK05612.1| putative ribosome-binding factor protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 134

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/126 (42%), Positives = 82/126 (65%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +  +   S+R LR+GE+VR+A+  V+   E +D +I   VIS+SEV MS DL++AT Y++
Sbjct: 3   RPTSSAPSQRMLRIGEQVRAAITQVLQRGEVRDDVIEATVISVSEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    VI ALN + +FIRGR+G  LR ++Y+PE+RFR DTS  +Y K++ L+  P+
Sbjct: 63  PLGVSDHSIVIEALNRHARFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122

Query: 122 IPVALE 127
           +   L+
Sbjct: 123 VSRDLD 128


>gi|110636255|ref|YP_676463.1| ribosome-binding factor A [Mesorhizobium sp. BNC1]
 gi|123057284|sp|Q11BC7|RBFA_MESSB RecName: Full=Ribosome-binding factor A
 gi|110287239|gb|ABG65298.1| ribosome-binding factor A [Chelativorans sp. BNC1]
          Length = 133

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/120 (40%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 5   NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
           +   S+R LRVGE+ R AL  V+   + +D  +   VIS+SEV MS DL++ATV++S PL
Sbjct: 3   SSAPSQRQLRVGEQARHALSDVLQREDMRDPALEGAVISVSEVRMSPDLKIATVFVS-PL 61

Query: 65  DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
               + +I+ALN + ++IRGR+  +LR ++Y+PE RF  DTS +++ K++ ++  P++  
Sbjct: 62  SGDKEAIIAALNRHARYIRGRVSPALRQMKYMPEFRFHLDTSYENFEKIDRILRSPEVAR 121


>gi|197106896|ref|YP_002132273.1| ribosome-binding factor A [Phenylobacterium zucineum HLK1]
 gi|238690151|sp|B4RC51|RBFA_PHEZH RecName: Full=Ribosome-binding factor A
 gi|196480316|gb|ACG79844.1| ribosome-binding factor A [Phenylobacterium zucineum HLK1]
          Length = 145

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +      S+R LR GE VR AL+ +    E  D +++   ++++EV +S DLR ATV++ 
Sbjct: 9   RRPPQGPSQRQLRAGELVRHALVEIFREEEINDPVLAGVSVTVTEVRVSPDLRHATVFVE 68

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                  D V+ ALN + +F+RG +GR++  LR+ PEL+F +D S     ++  L   PK
Sbjct: 69  PLGGEHADEVVQALNRHARFLRGHLGRAI-ELRFTPELKFLHDESFNEAARMAKLFDDPK 127

Query: 122 IPVAL 126
           +   L
Sbjct: 128 VRQDL 132


>gi|209551637|ref|YP_002283554.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226723606|sp|B5ZW28|RBFA_RHILW RecName: Full=Ribosome-binding factor A
 gi|209537393|gb|ACI57328.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 134

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/126 (42%), Positives = 83/126 (65%)

Query: 2   KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
           +  +   S+R LRVGE+VR+A+  V+   E +D +I   VISISEV MS DL++AT Y++
Sbjct: 3   RATSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT 62

Query: 62  LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
                    VI ALN + ++IRGR+G+ LR ++Y+PE+RFR DTS  +Y K++ L+  P+
Sbjct: 63  PLGVSDHSVVIEALNRHARYIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122