RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780786|ref|YP_003065199.1| ribosome-binding factor A
[Candidatus Liberibacter asiaticus str. psy62]
         (128 letters)



>d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia
           coli [TaxId: 562]}
          Length = 108

 Score = 76.8 bits (189), Expect = 5e-16
 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 6/105 (5%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            K   R  RV +E++  +   IL  E +D  +   + ++S V MS DL  A VY++   D
Sbjct: 2   AKEFGRPQRVAQEMQKEIAL-ILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLND 59

Query: 66  VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
              D V   I AL     FIR  +G+++R LR VPEL F YD SL
Sbjct: 60  KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSL 103


>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus
           influenzae [TaxId: 727]}
          Length = 100

 Score = 70.7 bits (173), Expect = 4e-14
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 7/100 (7%)

Query: 11  RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
           R+ RV +E++  +  VIL  E +D  I    +++S+V +S DL  A ++++      +++
Sbjct: 1   RSDRVAQEIQKEIA-VILQREVKDPRIGM--VTVSDVEVSSDLSYAKIFVTFLFDHDEMA 57

Query: 68  PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
            ++ +  L     +IR  +G+++R LR VPE+RF YD SL
Sbjct: 58  IEQGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSL 96


>d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 3/112 (2%)

Query: 7   KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
           ++  R   +   +  AL  ++   E    L     + +S+V ++ D      Y       
Sbjct: 3   EDHARLRALNGLLYKALTDLLCTPEVSQELYDL-NVELSKVSLTPDFSACRAYWKTTLSA 61

Query: 66  VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
                + + L  +   +R  +      LR VP + F  D    +  +L+ L+
Sbjct: 62  EQNAHMEAVLQRSAAHMRHLLMSQQT-LRNVPPIVFVQDKGNAALAELDQLL 112


>d1pa4a_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Mycoplasma
           pneumoniae [TaxId: 2104]}
          Length = 96

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
           R+  ++   +    + +E  +  +      ++ V +S DL   TVY+        DRV+ 
Sbjct: 3   RLENDIIRLIN-RTVIHEIYNETVKT--GHVTHVKLSDDLLHVTVYLDCYNREQIDRVVG 59

Query: 74  ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
           A N         +  +L  L    ++ F  D ++
Sbjct: 60  AFNQAKGVFSRVLAHNLY-LAKAVQIHFVKDKAI 92


>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus
           thermophilus [TaxId: 274]}
          Length = 91

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 14  RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
            +  +++ AL   I     +D  +    +++  V +S D  V +VY+        +  + 
Sbjct: 4   HLEAQLKRALAEEI--QALEDPRLFL--LTVEAVRLSKDGSVLSVYVEA--FREEEGALR 57

Query: 74  ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
           AL+   + +   + R +R +R +P L F    +
Sbjct: 58  ALSRAERRLVAALARRVR-MRRLPRLEFLPWRA 89


>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea
           mays) [TaxId: 4577]}
          Length = 289

 Score = 22.9 bits (49), Expect = 8.3
 Identities = 11/74 (14%), Positives = 22/74 (29%)

Query: 33  QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
           Q+RL +            +     +V+++  L           + ++  I    G     
Sbjct: 21  QERLTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNAT 80

Query: 93  LRYVPELRFRYDTS 106
             Y  E    YD +
Sbjct: 81  TVYSIEATLNYDNA 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 466,819
Number of extensions: 19041
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 8
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.5 bits)