RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780786|ref|YP_003065199.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str. psy62] (128 letters) >d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia coli [TaxId: 562]} Length = 108 Score = 76.8 bits (189), Expect = 5e-16 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 6/105 (5%) Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65 K R RV +E++ + IL E +D + + ++S V MS DL A VY++ D Sbjct: 2 AKEFGRPQRVAQEMQKEIAL-ILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLND 59 Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107 D V I AL FIR +G+++R LR VPEL F YD SL Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSL 103 >d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]} Length = 100 Score = 70.7 bits (173), Expect = 4e-14 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 7/100 (7%) Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67 R+ RV +E++ + VIL E +D I +++S+V +S DL A ++++ +++ Sbjct: 1 RSDRVAQEIQKEIA-VILQREVKDPRIGM--VTVSDVEVSSDLSYAKIFVTFLFDHDEMA 57 Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107 ++ + L +IR +G+++R LR VPE+RF YD SL Sbjct: 58 IEQGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSL 96 >d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Score = 67.6 bits (165), Expect = 3e-13 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65 ++ R + + AL ++ E L + +S+V ++ D Y Sbjct: 3 EDHARLRALNGLLYKALTDLLCTPEVSQELYDL-NVELSKVSLTPDFSACRAYWKTTLSA 61 Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117 + + L + +R + LR VP + F D + +L+ L+ Sbjct: 62 EQNAHMEAVLQRSAAHMRHLLMSQQT-LRNVPPIVFVQDKGNAALAELDQLL 112 >d1pa4a_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Mycoplasma pneumoniae [TaxId: 2104]} Length = 96 Score = 61.4 bits (149), Expect = 3e-11 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 4/94 (4%) Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73 R+ ++ + + +E + + ++ V +S DL TVY+ DRV+ Sbjct: 3 RLENDIIRLIN-RTVIHEIYNETVKT--GHVTHVKLSDDLLHVTVYLDCYNREQIDRVVG 59 Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107 A N + +L L ++ F D ++ Sbjct: 60 AFNQAKGVFSRVLAHNLY-LAKAVQIHFVKDKAI 92 >d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]} Length = 91 Score = 57.1 bits (138), Expect = 4e-10 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 7/93 (7%) Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73 + +++ AL I +D + +++ V +S D V +VY+ + + Sbjct: 4 HLEAQLKRALAEEI--QALEDPRLFL--LTVEAVRLSKDGSVLSVYVEA--FREEEGALR 57 Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106 AL+ + + + R +R +R +P L F + Sbjct: 58 ALSRAERRLVAALARRVR-MRRLPRLEFLPWRA 89 >d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 289 Score = 22.9 bits (49), Expect = 8.3 Identities = 11/74 (14%), Positives = 22/74 (29%) Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92 Q+RL + + +V+++ L + ++ I G Sbjct: 21 QERLTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNAT 80 Query: 93 LRYVPELRFRYDTS 106 Y E YD + Sbjct: 81 TVYSIEATLNYDNA 94 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.138 0.406 Gapped Lambda K H 0.267 0.0615 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 466,819 Number of extensions: 19041 Number of successful extensions: 87 Number of sequences better than 10.0: 1 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 8 Length of query: 128 Length of database: 2,407,596 Length adjustment: 75 Effective length of query: 53 Effective length of database: 1,377,846 Effective search space: 73025838 Effective search space used: 73025838 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 48 (22.5 bits)