BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780786|ref|YP_003065199.1| ribosome-binding factor A
[Candidatus Liberibacter asiaticus str. psy62]
(128 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780786|ref|YP_003065199.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 128
Score = 256 bits (655), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI
Sbjct: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP
Sbjct: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
Query: 121 KIPVALEK 128
KIPVALEK
Sbjct: 121 KIPVALEK 128
>gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 469
Score = 23.9 bits (50), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 52 DLRVATVYISLPLDVSPDRVISALN 76
DL V Y+ LP+ DR++ ++N
Sbjct: 283 DLDVLMPYLHLPVQSGSDRILKSMN 307
>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 492
Score = 23.5 bits (49), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 46 EVCMSVDLRVATVYISLPLDVSPD 69
E C DL A Y + LD+SPD
Sbjct: 163 ESCRIGDLNSAQRYATKALDISPD 186
>gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 805
Score = 23.1 bits (48), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 DVSPDRVISALNCNIKFIRGRIG 87
D+SPD V+ A + I+ I G IG
Sbjct: 296 DLSPDNVVIASDGRIQSIAGIIG 318
>gi|254780963|ref|YP_003065376.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 215
Score = 22.3 bits (46), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 25 WVILNNEFQDRLISRDVISISEVCM 49
W+IL ++F R S DV+ VCM
Sbjct: 150 WLILQSDFAIRHASSDVV----VCM 170
>gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
Length = 723
Score = 22.3 bits (46), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 103 YDTSLQSYWKLNALMCLPK 121
YD +++ W+ AL+ +PK
Sbjct: 590 YDKNIECVWQDEALLPIPK 608
>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1576
Score = 22.3 bits (46), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
D+I ISE C + L V ++ ++ + + DR++S
Sbjct: 1457 DLIDISETCDTSLLVVLDMWSAISVGLGVDRLLS 1490
>gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
asiaticus str. psy62]
Length = 357
Score = 21.6 bits (44), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVIS 43
++S L++G V S L W N +RL S +++
Sbjct: 36 GQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVT 73
>gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD family protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 188
Score = 21.6 bits (44), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 24 MWVILNNEFQDRLISRDVISISEVC 48
MW E+ ++ S D+I+I+EV
Sbjct: 95 MWSRRAQEYDAKINSGDLIAIAEVV 119
>gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 21.2 bits (43), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 85 RIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
R+G L +R+V E +F L + +L+ L+
Sbjct: 151 RVGSRLSQIRFVKERKFCSQEELSALHELSPLV 183
>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 598
Score = 20.8 bits (42), Expect = 8.5, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISAL 75
D+I + ++ D+ ++Y+ +SPD +I L
Sbjct: 118 DIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKL 153
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.325 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,281
Number of Sequences: 1233
Number of extensions: 2721
Number of successful extensions: 15
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 13
length of query: 128
length of database: 328,796
effective HSP length: 65
effective length of query: 63
effective length of database: 248,651
effective search space: 15665013
effective search space used: 15665013
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 33 (17.3 bits)