HHsearch alignment for GI: 254780787 and conserved domain: COG0486
>COG0486 ThdF Predicted GTPase [General function prediction only].
Probab=99.06 E-value=9.1e-09 Score=77.93 Aligned_cols=156 Identities=26% Similarity=0.309 Sum_probs=116.3
Q ss_pred CCCCCCCCCE-EEEEECCCCCHHHHHHHHHHHHHH--HCCCCCCEECCCEEEEECCCCEEEEEECCCHH-------HHHH
Q ss_conf 1001255303-898623685044677788642221--00123100012149995178438888516615-------7899
Q gi|254780787|r 376 ESDLDIRPPV-VTIMGHVDHGKTSLLDAIRKADVA--KGEIGGITQHIGAYQVAYQGKNITFLDTPGHA-------AFYE 445 (884)
Q Consensus 376 ~~~~~~R~pv-v~v~ghvd~GKt~lld~~r~~~~~--~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~-------~f~~ 445 (884)
T Consensus 209 ~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~-GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGI 287 (454)
T COG0486 209 KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA-GTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGI 287 (454)
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCC-CCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 42136645864999879988679999988667866742899-97410378999989889999856776667348999999
Q ss_pred HHHHH-HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 98666-42068059999836674023577789899709941561233124433200022100001320001234740363
Q gi|254780787|r 446 MRARG-ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVE 524 (884)
Q Consensus 446 ~r~rg-~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (884)
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~-------~~----~~~~~~~~i~ 355 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELE-------SE----KLANGDAIIS 355 (454)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HCCCCCCEEEEEECHHCCCCCCCC-------HH----HCCCCCCEEE
T ss_conf 99999998599899997088777601177887-243689779999602115643210-------12----0267882699
Q ss_pred EEECCCCCCCCCCCCHHCCC
Q ss_conf 11002477411221000023
Q gi|254780787|r 525 ISAKNNLNLDKLLDAILLQA 544 (884)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~ 544 (884)
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred EEECCCCCHHHHHHHHHHHH
T ss_conf 98257657999999999998