HHsearch alignment for GI: 254780787 and conserved domain: COG1217
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].
Probab=100.00 E-value=1.8e-34 Score=253.69 Aligned_cols=240 Identities=29% Similarity=0.330 Sum_probs=185.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCC----------------CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHH
Q ss_conf 3898623685044677788642221001----------------231000121499951784388885166157899986
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGE----------------IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRA 448 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e----------------~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~ 448 (884)
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred EEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECCCEEECCCEEEEEECCCCCCCCCCHHH
T ss_conf 06899984488102899998731654456520144037642344349389851524620883898765898677662545
Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCCEEEEEE
Q ss_conf 66420680599998366740235777898997099415612331244332000221000013200--0123474036311
Q gi|254780787|r 449 RGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFV--ESMGGDILDVEIS 526 (884)
Q Consensus 449 rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 526 (884)
T Consensus 87 Rvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS 166 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYAS 166 (603)
T ss_pred HHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCEEEEEE
T ss_conf 11432334899997555888731444899997499848999677899988789999999999981997455787079854
Q ss_pred ECCCCC----------CCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCC---
Q ss_conf 002477----------4112210000233334200034866641677788637762000000000000000002566---
Q gi|254780787|r 527 AKNNLN----------LDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGD--- 593 (884)
Q Consensus 527 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 593 (884)
T Consensus 167 ~~~G~a~~~~~~~~~~m~pLfe~I~~--hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g 244 (603)
T COG1217 167 ARNGTASLDPEDEADDMAPLFETILD--HVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDG 244 (603)
T ss_pred CCCCEECCCCCCCCCCHHHHHHHHHH--HCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECCCC
T ss_conf 14751015865555531689999997--5899989998880789985224454522689998527254897689984799
Q ss_pred --CCCCCEECCCCCC---CCCCCCCCCCCCCCCCCCCC
Q ss_conf --5554200014665---32210000122211112347
Q gi|254780787|r 594 --QWGKIRALFNDRG---QGISKAVPSMPIEVLGLQGM 626 (884)
Q Consensus 594 --~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 626 (884)
T Consensus 245 ~~~~gri~kll~f~GL~R~ei~eA~AGDIvaiaG~~~~ 282 (603)
T COG1217 245 TTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI 282 (603)
T ss_pred CEEEEEEEEEEECCCEEEEEHHHCCCCCEEEECCCCCC
T ss_conf 47755776665505423335001255678998276435