HHsearch alignment for GI: 254780787 and conserved domain: COG4108
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].
Probab=99.81 E-value=1.1e-19 Score=152.60 Aligned_cols=124 Identities=33% Similarity=0.470 Sum_probs=107.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC----------------------CCEECCCEEEEECCCCEEEEEECCC
Q ss_conf 530389862368504467778864222100123----------------------1000121499951784388885166
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIG----------------------GITQHIGAYQVAYQGKNITFLDTPG 439 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~g----------------------gitq~iga~~~~~~~~~~~~iDtPG 439 (884)
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred HHCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCC
T ss_conf 43403688568888511889999723034305501222577634227788887568558765787603884886147998
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
Q ss_conf 157899986664206805999983667402357778989970994156123312443320002210
Q gi|254780787|r 440 HAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMS 505 (884)
Q Consensus 440 h~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~ 505 (884)
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdE 156 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDE 156 (528)
T ss_pred CCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 654323678999864104689860358668899999998505984699750236566886899999