HHsearch alignment for GI: 254780787 and conserved domain: COG5192
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis].
Probab=98.78 E-value=1.2e-07 Score=70.31 Aligned_cols=105 Identities=23% Similarity=0.410 Sum_probs=81.7
Q ss_pred CCCC-EEEEEECCCCCHHHHHHHHH--HHHHHHCC-CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 5530-38986236850446777886--42221001-23100012149995178438888516615789998666420680
Q gi|254780787|r 381 IRPP-VVTIMGHVDHGKTSLLDAIR--KADVAKGE-IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDI 456 (884)
Q Consensus 381 ~R~p-vv~v~ghvd~GKt~lld~~r--~~~~~~~e-~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~ 456 (884)
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv------vsgK~RRiTflEcp--~Dl~~mi-DvaKIaDL 136 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV------VSGKTRRITFLECP--SDLHQMI-DVAKIADL 136 (1077)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE------EECCEEEEEEEECH--HHHHHHH-HHHHHHHE
T ss_conf 899758996369988746899999999877542036786478------61563578988671--7888887-68875213
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EECCCCCC
Q ss_conf 599998366740235777898997099415-61233124
Q gi|254780787|r 457 AVLVLAADEEIMPQAIESINHAKAADVSII-VAINKIDK 494 (884)
Q Consensus 457 ~ilvv~~~~g~~~qt~e~~~~~~~~~~p~i-va~nk~d~ 494 (884)
T Consensus 137 VlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDl 175 (1077)
T COG5192 137 VLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDL 175 (1077)
T ss_pred EEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 578863666704248899999866489724788862113