HHsearch alignment for GI: 254780787 and conserved domain: COG5258

>COG5258 GTPBP1 GTPase [General function prediction only].
Probab=99.88  E-value=1.8e-22  Score=171.64  Aligned_cols=209  Identities=27%  Similarity=0.333  Sum_probs=153.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHH-------------HHHCCC-CCCEECCC--EEEEE---------------------C
Q ss_conf             38986236850446777886422-------------210012-31000121--49995---------------------1
Q gi|254780787|r  385 VVTIMGHVDHGKTSLLDAIRKAD-------------VAKGEI-GGITQHIG--AYQVA---------------------Y  427 (884)
Q Consensus       385 vv~v~ghvd~GKt~lld~~r~~~-------------~~~~e~-ggitq~ig--a~~~~---------------------~  427 (884)
T Consensus       119 ~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~  198 (527)
T COG5258         119 LVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKR  198 (527)
T ss_pred             EEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHHHHHHHHHH
T ss_conf             99974244578635987898457778884021134541677761653222699997249926760585207777676652


Q ss_pred             CCCEEEEEECCCHHHHHHHHHHH--HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCHHHH
Q ss_conf             78438888516615789998666--420680599998366740235777898997099415612331244332-000221
Q gi|254780787|r  428 QGKNITFLDTPGHAAFYEMRARG--ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGAD-PQKVRM  504 (884)
Q Consensus       428 ~~~~~~~iDtPGh~~f~~~r~rg--~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~-~~~~~~  504 (884)
T Consensus       199 aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~  278 (527)
T COG5258         199 ADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQGVVE  278 (527)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf             03089998537862789988888732666627999981677303306765656461697799999525682788999999


Q ss_pred             HHHCCC-------------------CCCCCCCC-CCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             000013-------------------20001234-7403631100247741122100002333342000348666416777
Q gi|254780787|r  505 SLLKHD-------------------VFVESMGG-DILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEG  564 (884)
Q Consensus       505 ~~~~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (884)
T Consensus       279 ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~r--r~~~d~g~flmYId~i  356 (527)
T COG5258         279 EISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKR--RRWDDEGPFLMYIDKI  356 (527)
T ss_pred             HHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCEEEEEEEE
T ss_conf             99999997434653550553267765433237825779998224575389999999749850--0247789728998756


Q ss_pred             EEECCCCCCHHHHHHCCHHHCCCCCCCCCCC
Q ss_conf             8863776200000000000000000256655
Q gi|254780787|r  565 KLDRGRGPVVTVLVQKGTLSKGNILVVGDQW  595 (884)
Q Consensus       565 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  595 (884)
T Consensus       357 YsVtGVGtVvsGsV~~G~l~~gd~vllGP~~  387 (527)
T COG5258         357 YSVTGVGTVVSGSVKSGILHVGDTVLLGPFK  387 (527)
T ss_pred             EEEEEEEEEEEEEEEEEEECCCCEEEECCCC
T ss_conf             7774257898613776166059879974578