HHsearch alignment for GI: 254780787 and conserved domain: COG5258
>COG5258 GTPBP1 GTPase [General function prediction only].
Probab=99.88 E-value=1.8e-22 Score=171.64 Aligned_cols=209 Identities=27% Similarity=0.333 Sum_probs=153.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH-------------HHHCCC-CCCEECCC--EEEEE---------------------C
Q ss_conf 38986236850446777886422-------------210012-31000121--49995---------------------1
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKAD-------------VAKGEI-GGITQHIG--AYQVA---------------------Y 427 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~-------------~~~~e~-ggitq~ig--a~~~~---------------------~ 427 (884)
T Consensus 119 ~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~ 198 (527)
T COG5258 119 LVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKR 198 (527)
T ss_pred EEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHHHHHHHHHH
T ss_conf 99974244578635987898457778884021134541677761653222699997249926760585207777676652
Q ss_pred CCCEEEEEECCCHHHHHHHHHHH--HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCHHHH
Q ss_conf 78438888516615789998666--420680599998366740235777898997099415612331244332-000221
Q gi|254780787|r 428 QGKNITFLDTPGHAAFYEMRARG--ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGAD-PQKVRM 504 (884)
Q Consensus 428 ~~~~~~~iDtPGh~~f~~~r~rg--~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~-~~~~~~ 504 (884)
T Consensus 199 aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~ 278 (527)
T COG5258 199 ADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQGVVE 278 (527)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 03089998537862789988888732666627999981677303306765656461697799999525682788999999
Q ss_pred HHHCCC-------------------CCCCCCCC-CCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 000013-------------------20001234-7403631100247741122100002333342000348666416777
Q gi|254780787|r 505 SLLKHD-------------------VFVESMGG-DILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEG 564 (884)
Q Consensus 505 ~~~~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (884)
T Consensus 279 ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~r--r~~~d~g~flmYId~i 356 (527)
T COG5258 279 EISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKR--RRWDDEGPFLMYIDKI 356 (527)
T ss_pred HHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCEEEEEEEE
T ss_conf 99999997434653550553267765433237825779998224575389999999749850--0247789728998756
Q ss_pred EEECCCCCCHHHHHHCCHHHCCCCCCCCCCC
Q ss_conf 8863776200000000000000000256655
Q gi|254780787|r 565 KLDRGRGPVVTVLVQKGTLSKGNILVVGDQW 595 (884)
Q Consensus 565 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 595 (884)
T Consensus 357 YsVtGVGtVvsGsV~~G~l~~gd~vllGP~~ 387 (527)
T COG5258 357 YSVTGVGTVVSGSVKSGILHVGDTVLLGPFK 387 (527)
T ss_pred EEEEEEEEEEEEEEEEEEECCCCEEEECCCC
T ss_conf 7774257898613776166059879974578