HHsearch alignment for GI: 254780787 and conserved domain: PRK04004
>PRK04004 translation initiation factor IF-2; Validated.
Probab=100.00 E-value=0 Score=1018.09 Aligned_cols=470 Identities=31% Similarity=0.486 Sum_probs=405.1
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCC------------------EEEEEECCCH
Q ss_conf 1255303898623685044677788642221001231000121499951784------------------3888851661
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGK------------------NITFLDTPGH 440 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~------------------~~~~iDtPGh 440 (884)
T Consensus 1 ~~lR~PIvtimGHVDhGKTsLLD~iR~t~V~~~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipgllfiDTPGH 80 (592)
T PRK04004 1 MKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPGLLFIDTPGH 80 (592)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCCCEEECCCCH
T ss_conf 99889889997873777636899986287735557762323065984123101103443344332345677557659965
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHH------------------
Q ss_conf 57899986664206805999983667402357778989970994156123312443320002------------------
Q gi|254780787|r 441 AAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKV------------------ 502 (884)
Q Consensus 441 ~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~------------------ 502 (884)
T Consensus 81 eaFt~mR~RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~~~~~~~~~~q~~~v~~~ 160 (592)
T PRK04004 81 EAFSNLRKRGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEGAPFLESFKKQSERVQAE 160 (592)
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHH
T ss_conf 99999997367457889999977888676279999999975998899986223566677676741123223173889999
Q ss_pred --------HHHHHCCCCCCC------CCCCCCEEEEEEECCCCCCCCCCCCHHCCCC-CC--CCCCCCCCCCCCEEEEEE
Q ss_conf --------210000132000------1234740363110024774112210000233-33--420003486664167778
Q gi|254780787|r 503 --------RMSLLKHDVFVE------SMGGDILDVEISAKNNLNLDKLLDAILLQAE-ML--DLKTSINRKAEGIVVEGK 565 (884)
Q Consensus 503 --------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 565 (884)
T Consensus 161 l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~~Laq~~l~~~Lka~~~~~a~GtViEsk 240 (592)
T PRK04004 161 LEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEEELKIEVEGPGKGTVLEVK 240 (592)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 98888888899987287632214543458814899782056899899999999999999998536799998618999998
Q ss_pred EECCCCCCHHHHHHCCHHHCCCCCCCCCCCC----CCEECCCC-----------CCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 8637762000000000000000002566555----42000146-----------65322100001222111--1234755
Q gi|254780787|r 566 LDRGRGPVVTVLVQKGTLSKGNILVVGDQWG----KIRALFND-----------RGQGISKAVPSMPIEVL--GLQGMPM 628 (884)
Q Consensus 566 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~v~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~ 628 (884)
T Consensus 241 ~dkG~G~vatVIv~~GtLk~GD~IV~g~~~Gpi~tkVRALl~p~pl~E~r~~~~~~~~v~ev~aa~gvki~a~~le~~-~ 319 (592)
T PRK04004 241 EERGLGTTLDVILYDGTLRKGDTIVVGGLDGPIVTKVRALLKPKPLDEMRDPEDKFKPVDEVVAAAGVKISAPGLEDV-L 319 (592)
T ss_pred ECCCCCCEEEEEEECCEECCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-C
T ss_conf 607988617999976847169999995157862000476607876431357788871677225898857963786667-8
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 55404312420366899999999999999877664456578888520001230233444333102312345554211576
Q gi|254780787|r 629 AGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEFPVIIKGDVQGSVEAIVDSLGALKN 708 (884)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~d~~gs~eal~~~l~~~~~ 708 (884)
T Consensus 320 aG~~~~vv~~~~~~~~~~~~~~e------~~----------~~------~i~~~~~gvIIKADv~GSlEAl~~~L~~--- 374 (592)
T PRK04004 320 AGSPLRVVRDEDVEEVKKEVEEE------IE----------EI------RIETDEEGVIVKADTLGSLEALVNELRK--- 374 (592)
T ss_pred CCCEEEECCCHHHHHHHHHHHHH------HH----------HH------HHCCCCCCEEEEECCCCCHHHHHHHHHH---
T ss_conf 89735862836899999999999------87----------53------3210015579995476749999999974---
Q ss_pred CEEEEEEEECCCCCCCHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf 53565788512685757788764325------987999638999899999998398599750267899999999963069
Q gi|254780787|r 709 SEVCLSIVHSSVGAINETDVSLAKAS------GAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSELLS 782 (884)
Q Consensus 709 ~ev~i~v~~~~VG~v~~~DV~~A~~~------~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~l~ 782 (884)
T Consensus 375 --~~I~I~~a~VG~ItesDV~lA~as~~~~~~~avIlgFNVk~~~~a~~~Ae~~gV~I~~~~IIY~LiDd~~~~~~~~~~ 452 (592)
T PRK04004 375 --QGIPIRKADVGDVSKRDVIEASTVREKDPLYGVILAFNVKVLPDAEEEAESSDVKIFEGDVIYQLVEDYEKWVKEQKE 452 (592)
T ss_pred --CCCCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf --697579840688664246672431255766518999548899889999997497699807487689999999997565
Q ss_pred CEEEE---EEEEEEEEE----EEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCE
Q ss_conf 40478---888789997----88733898707899985217846980799669989982262576644600668727976
Q gi|254780787|r 783 PEIRE---TFLGNAEVL----EVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQD 855 (884)
Q Consensus 783 ~~~~~---~~~g~a~v~----~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~e 855 (884)
T Consensus 453 ~~~~e~~~~~v~p~~i~ilp~~VFr~s~-p~I~Gv~V~~G~ik~g~~l-~~~dg~~i--G~I~SLk~~k~dV~Ev~~G~E 528 (592)
T PRK04004 453 AEKEKILEKLTRPAKIRILPGYVFRQSK-PAIVGVEVLGGTIKPGVPL-IKEDGKRV--GTIKQIQDRGENIKEAKAGME 528 (592)
T ss_pred HHHHHHHHCCEEEEEEEECCCEEEECCC-CEEEEEEEEEEEEECCCEE-EECCCCEE--EEEEEHHHCCCCHHHHCCCCE
T ss_conf 6567764144336999983661572699-8699999864689669869-90499199--898105213876545268977
Q ss_pred EEEEEECC---EEEEECCEEEEEEEEEE
Q ss_conf 69997284---11005898999889998
Q gi|254780787|r 856 CGMAFEKY---DNIQAGDMIECFSIEHI 880 (884)
Q Consensus 856 cgi~~~~~---~~~~~gD~i~~~~~~~~ 880 (884)
T Consensus 529 cgI~Ieg~t~GR~~~e~D~lys~i~~~~ 556 (592)
T PRK04004 529 VAISIDGPTVGRQIKEGDVLYVDVPEEH 556 (592)
T ss_pred EEEEEECCCCCCCCCCCCEEEEECCHHH
T ss_conf 9999647720677789987999689999