HHsearch alignment for GI: 254780787 and conserved domain: PRK06731

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=91.82  E-value=0.84  Score=23.43  Aligned_cols=112  Identities=22%  Similarity=0.253  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHH------HH-----HCCCCCCEE------CCCEEEEEC--------------
Q ss_conf             12553038986236850446777886422------21-----001231000------121499951--------------
Q gi|254780787|r  379 LDIRPPVVTIMGHVDHGKTSLLDAIRKAD------VA-----KGEIGGITQ------HIGAYQVAY--------------  427 (884)
Q Consensus       379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~------~~-----~~e~ggitq------~iga~~~~~--------------  427 (884)
T Consensus        71 ~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~  150 (270)
T PRK06731         71 FEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK  150 (270)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHH
T ss_conf             67998189998889898899999999999867990899983888888999999999981995354588789999999999


Q ss_pred             --CCCEEEEEECCCHHHH-----HHH-HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CEEEECCCCCC
Q ss_conf             --7843888851661578-----999-8666420680599998366740235777898997099--41561233124
Q gi|254780787|r  428 --QGKNITFLDTPGHAAF-----YEM-RARGARVTDIAVLVLAADEEIMPQAIESINHAKAADV--SIIVAINKIDK  494 (884)
Q Consensus       428 --~~~~~~~iDtPGh~~f-----~~~-r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~--p~iva~nk~d~  494 (884)
T Consensus       151 ~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~----~~~~~~~~~f~~~~i~gvIlTKlD~  223 (270)
T PRK06731        151 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS----KDMIEIITNFKDIHIDGIVFTKFDE  223 (270)
T ss_pred             HHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCH----HHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             976999999979998714699999999986063898799998687776----9999999980779998899965358