HHsearch alignment for GI: 254780787 and conserved domain: PRK10512

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional.
Probab=100.00  E-value=5.7e-39  Score=284.57  Aligned_cols=226  Identities=26%  Similarity=0.323  Sum_probs=177.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHH---HHCCCCCCEECCCEEEEECC-CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             389862368504467778864222---10012310001214999517-84388885166157899986664206805999
Q gi|254780787|r  385 VVTIMGHVDHGKTSLLDAIRKADV---AKGEIGGITQHIGAYQVAYQ-GKNITFLDTPGHAAFYEMRARGARVTDIAVLV  460 (884)
Q Consensus       385 vv~v~ghvd~GKt~lld~~r~~~~---~~~e~ggitq~iga~~~~~~-~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv  460 (884)
T Consensus         2 IigTAGHVDHGKTsLvkALTG~dtDRL~EEk~RGiTIdLGFA~~~l~~g~~~g~VDVPGHErFIknMlAG~~gid~vlLV   81 (615)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV   81 (615)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHCCEEEECEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf             89963654778999999986888656977897187277130755579997899987998389999997446437889999


Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCC-CCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             983667402357778989970994-156123312443-320002210000132000123474036311002477411221
Q gi|254780787|r  461 LAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLG-ADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD  538 (884)
Q Consensus       461 v~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (884)
T Consensus        82 VAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~~l~~--t~l~~~pi~~vSa~tg~Gi~~L~~  159 (615)
T PRK10512         82 VACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIDEVRRQVLEVLRE--YGFAEAKLFVTAATEGRGIDALRE  159 (615)
T ss_pred             EECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC--CCCCCCCEEECCCCCCCCHHHHHH
T ss_conf             988998772379999999981998289999776568979999999999999844--787679752014566679999999


Q ss_pred             CHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCC--CCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf             00002333342000348666416777886377620000000000000000025--6655542000146653221000012
Q gi|254780787|r  539 AILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVV--GDQWGKIRALFNDRGQGISKAVPSM  616 (884)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~  616 (884)
T Consensus       160 ~L~~l~~~---~~~~~~~fRL~IDRvFsvkG~GTVVTGTl~sG~v~~GD~l~i~P~~~~~rVR~iQ~-h~~~v~~a~aG~  235 (615)
T PRK10512        160 HLLQLPER---EHASQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRALHA-QNQPTETAHAGQ  235 (615)
T ss_pred             HHHHHCCC---CCCCCCCEEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCCEEEEEEHHH-CCCCCCEECCCC
T ss_conf             99862556---66767761788311896268856999998147142699899869996798734776-798155732774