HHsearch alignment for GI: 254780787 and conserved domain: PRK10512
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional.
Probab=100.00 E-value=5.7e-39 Score=284.57 Aligned_cols=226 Identities=26% Similarity=0.323 Sum_probs=177.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHCCCCCCEECCCEEEEECC-CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 389862368504467778864222---10012310001214999517-84388885166157899986664206805999
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADV---AKGEIGGITQHIGAYQVAYQ-GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~---~~~e~ggitq~iga~~~~~~-~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 2 IigTAGHVDHGKTsLvkALTG~dtDRL~EEk~RGiTIdLGFA~~~l~~g~~~g~VDVPGHErFIknMlAG~~gid~vlLV 81 (615)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (615)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHCCEEEECEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 89963654778999999986888656977897187277130755579997899987998389999997446437889999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCC-CCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 983667402357778989970994-156123312443-320002210000132000123474036311002477411221
Q gi|254780787|r 461 LAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLG-ADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
T Consensus 82 VAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~~l~~--t~l~~~pi~~vSa~tg~Gi~~L~~ 159 (615)
T PRK10512 82 VACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIDEVRRQVLEVLRE--YGFAEAKLFVTAATEGRGIDALRE 159 (615)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC--CCCCCCCEEECCCCCCCCHHHHHH
T ss_conf 988998772379999999981998289999776568979999999999999844--787679752014566679999999
Q ss_pred CHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCC--CCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 00002333342000348666416777886377620000000000000000025--6655542000146653221000012
Q gi|254780787|r 539 AILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVV--GDQWGKIRALFNDRGQGISKAVPSM 616 (884)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~ 616 (884)
T Consensus 160 ~L~~l~~~---~~~~~~~fRL~IDRvFsvkG~GTVVTGTl~sG~v~~GD~l~i~P~~~~~rVR~iQ~-h~~~v~~a~aG~ 235 (615)
T PRK10512 160 HLLQLPER---EHASQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRALHA-QNQPTETAHAGQ 235 (615)
T ss_pred HHHHHCCC---CCCCCCCEEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCCEEEEEEHHH-CCCCCCEECCCC
T ss_conf 99862556---66767761788311896268856999998147142699899869996798734776-798155732774