HHsearch alignment for GI: 254780787 and conserved domain: TIGR00491

>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=100.00  E-value=0  Score=729.48  Aligned_cols=462  Identities=28%  Similarity=0.419  Sum_probs=377.6

Q ss_pred             EECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCC------------------CEEEEEECCCHHHHHHHHHHH
Q ss_conf             62368504467778864222100123100012149995178------------------438888516615789998666
Q gi|254780787|r  389 MGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQG------------------KNITFLDTPGHAAFYEMRARG  450 (884)
Q Consensus       389 ~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~------------------~~~~~iDtPGh~~f~~~r~rg  450 (884)
T Consensus       557 nGivvh-nTTLLDkIRks~Vv~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPGLLfIDTPGHeaFt~LRkRG  635 (1145)
T TIGR00491       557 NGIVVH-NTTLLDKIRKSAVVKKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPGLLFIDTPGHEAFTNLRKRG  635 (1145)
T ss_pred             CCEEEE-CCCCCCCCCCCCEEEECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCEEEEEECCCCHHHHCCCCCC
T ss_conf             664785-1433100033401324778840100666546689865132121140257865801586078623442201001


Q ss_pred             HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCC-------------
Q ss_conf             4206805999983667402357778989970994156123312443320002210000132000123-------------
Q gi|254780787|r  451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMG-------------  517 (884)
Q Consensus       451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~-------------  517 (884)
T Consensus       636 GAlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq~~~~~~~l~~~~y~lv~  715 (1145)
T TIGR00491       636 GALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQEQRVKQNLDKKVYNLVI  715 (1145)
T ss_pred             CHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             03630110134102698403489999961289872895033055889645488516666541116788668877898873


Q ss_pred             ---------------------CCCEEEEEEECCCCCCCCCCCCHH--CCCC-CCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             ---------------------474036311002477411221000--0233-3342000348666416777886377620
Q gi|254780787|r  518 ---------------------GDILDVEISAKNNLNLDKLLDAIL--LQAE-MLDLKTSINRKAEGIVVEGKLDRGRGPV  573 (884)
Q Consensus       518 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (884)
T Consensus       716 ~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLAQ~YL~~~Lkl~~eG~AkGtiLEVKEe~GLG~T  795 (1145)
T TIGR00491       716 KKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLAQKYLEEKLKLEVEGPAKGTILEVKEEKGLGVT  795 (1145)
T ss_pred             CCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCE
T ss_conf             02211258871225520000113689886656789748999999888889988526742227865158987850689716


Q ss_pred             HHHHHHCCHHHCCCCCCCCCC----CCCCEECCCCCC-----------CCCCCCCCCCCCCCCCCC-CCCCCCCEEEECC
Q ss_conf             000000000000000025665----554200014665-----------322100001222111123-4755554043124
Q gi|254780787|r  574 VTVLVQKGTLSKGNILVVGDQ----WGKIRALFNDRG-----------QGISKAVPSMPIEVLGLQ-GMPMAGDKFGVVD  637 (884)
Q Consensus       574 ~~~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  637 (884)
T Consensus       796 ~DaviYdGilk~~D~iv~~~~d~vivT~vkAlLkP~Pl~emr~~~~~~~~~~ev~AAag~kv~A~~~~~~~Ag~P~y~v~  875 (1145)
T TIGR00491       796 IDAVIYDGILKKGDIIVLAGKDDVIVTRVKALLKPRPLEEMREERKKFKKVDEVVAAAGVKVAAPELDKVLAGSPIYVVV  875 (1145)
T ss_pred             EEEEEECCEECCCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCEEEECCCCHHHHHCCCCEEEEE
T ss_conf             99999557712078899813898057667863488883687510430475215773203587277610454577348951


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             20366899999999999999877664456578888520001230233-44433310231234555421157653565788
Q gi|254780787|r  638 SESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEF-PVIIKGDVQGSVEAIVDSLGALKNSEVCLSIV  716 (884)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ik~d~~gs~eal~~~l~~~~~~ev~i~v~  716 (884)
T Consensus       876 ~~~~iek~~e~v~~E~e~i---------------------~i~~d~~yGvvvKADtLGSLEA~v~~Lr~~-----~vpIk  929 (1145)
T TIGR00491       876 SEEEIEKVKEEVLKEVEEI---------------------KIETDEEYGVVVKADTLGSLEALVNELRKE-----GVPIK  929 (1145)
T ss_pred             CCCHHHHHHHHHHHHHHHH---------------------HHCCCCCCEEEEEECCCHHHHHHHHHHHHC-----CCCEE
T ss_conf             7822789999998767755---------------------421365111799855851189999999857-----89676


Q ss_pred             ECCCCCCCHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEE---E
Q ss_conf             512685757788764325------9879996389998999999983985997502678999999999630694047---8
Q gi|254780787|r  717 HSSVGAINETDVSLAKAS------GAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSELLSPEIR---E  787 (884)
Q Consensus       717 ~~~VG~v~~~DV~~A~~~------~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~l~~~~~---~  787 (884)
T Consensus       930 ~AdvGDv~krDvv~a~~~~~~~~~~Gai~AFnVK~Lp~~~~e~~kydik~f~~~iIY~L~e~f~~w~~~~~e~~k~~~~E 1009 (1145)
T TIGR00491       930 KADVGDVSKRDVVEAEIVKQEAKKYGAIVAFNVKVLPGAEKELKKYDIKLFSDNIIYKLMEEFEKWIEEIEEEKKRKKLE 1009 (1145)
T ss_pred             EEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             61038877420000756640178600899841555700243666578059725601022377899988888877643330


Q ss_pred             EEEEEEEEE----EEEECCCCCCEEEEEEEEEEEECCCEEEEEE-CCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEEC
Q ss_conf             888789997----8873389870789998521784698079966-99899822625766446006687279766999728
Q gi|254780787|r  788 TFLGNAEVL----EVFAVTKLGNVAGCKVSEGKVERGSGVRLIR-NSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEK  862 (884)
Q Consensus       788 ~~~g~a~v~----~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r-~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~  862 (884)
T Consensus      1010 ~likPa~Ikllp~~vFRrs~-PaI~GVeVL~G~lR~g~~--L~~~DG~~v--G~V~~~qd~g~nl~~A~~g~~~aiAI~d 1084 (1145)
T TIGR00491      1010 ALIKPAKIKLLPELVFRRSD-PAIVGVEVLAGVLRRGYP--LIKEDGEKV--GEVREIQDKGKNLKSASAGKEVAIAIED 1084 (1145)
T ss_pred             HCCCCEEEEECCCEECCCCC-CEEEEEEECCCEECCCCC--CCHHCCCCC--CCEEEEHHCCCCCEECCCCCCCCEEECC
T ss_conf             00177025541330023367-437988861435117887--611020002--4200100337730001047866513427


Q ss_pred             -C---EEEEECCEEEEEEEEEEEE
Q ss_conf             -4---1100589899988999851
Q gi|254780787|r  863 -Y---DNIQAGDMIECFSIEHIKR  882 (884)
Q Consensus       863 -~---~~~~~gD~i~~~~~~~~~~  882 (884)
T Consensus      1085 rvv~gr~~~egd~lYVdvPE~H~~ 1108 (1145)
T TIGR00491      1085 RVVLGRQVEEGDELYVDVPERHVK 1108 (1145)
T ss_pred             CEEEEEEECCCCEEEEECCCHHHH
T ss_conf             178810761786688815803589