HHsearch alignment for GI: 254780787 and conserved domain: TIGR00491
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=100.00 E-value=0 Score=729.48 Aligned_cols=462 Identities=28% Similarity=0.419 Sum_probs=377.6
Q ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCC------------------CEEEEEECCCHHHHHHHHHHH
Q ss_conf 62368504467778864222100123100012149995178------------------438888516615789998666
Q gi|254780787|r 389 MGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQG------------------KNITFLDTPGHAAFYEMRARG 450 (884)
Q Consensus 389 ~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~------------------~~~~~iDtPGh~~f~~~r~rg 450 (884)
T Consensus 557 nGivvh-nTTLLDkIRks~Vv~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPGLLfIDTPGHeaFt~LRkRG 635 (1145)
T TIGR00491 557 NGIVVH-NTTLLDKIRKSAVVKKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPGLLFIDTPGHEAFTNLRKRG 635 (1145)
T ss_pred CCEEEE-CCCCCCCCCCCCEEEECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCEEEEEECCCCHHHHCCCCCC
T ss_conf 664785-1433100033401324778840100666546689865132121140257865801586078623442201001
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCC-------------
Q ss_conf 4206805999983667402357778989970994156123312443320002210000132000123-------------
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMG------------- 517 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~------------- 517 (884)
T Consensus 636 GAlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq~~~~~~~l~~~~y~lv~ 715 (1145)
T TIGR00491 636 GALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQEQRVKQNLDKKVYNLVI 715 (1145)
T ss_pred CHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 03630110134102698403489999961289872895033055889645488516666541116788668877898873
Q ss_pred ---------------------CCCEEEEEEECCCCCCCCCCCCHH--CCCC-CCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf ---------------------474036311002477411221000--0233-3342000348666416777886377620
Q gi|254780787|r 518 ---------------------GDILDVEISAKNNLNLDKLLDAIL--LQAE-MLDLKTSINRKAEGIVVEGKLDRGRGPV 573 (884)
Q Consensus 518 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (884)
T Consensus 716 ~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLAQ~YL~~~Lkl~~eG~AkGtiLEVKEe~GLG~T 795 (1145)
T TIGR00491 716 KKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLAQKYLEEKLKLEVEGPAKGTILEVKEEKGLGVT 795 (1145)
T ss_pred CCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCE
T ss_conf 02211258871225520000113689886656789748999999888889988526742227865158987850689716
Q ss_pred HHHHHHCCHHHCCCCCCCCCC----CCCCEECCCCCC-----------CCCCCCCCCCCCCCCCCC-CCCCCCCEEEECC
Q ss_conf 000000000000000025665----554200014665-----------322100001222111123-4755554043124
Q gi|254780787|r 574 VTVLVQKGTLSKGNILVVGDQ----WGKIRALFNDRG-----------QGISKAVPSMPIEVLGLQ-GMPMAGDKFGVVD 637 (884)
Q Consensus 574 ~~~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 637 (884)
T Consensus 796 ~DaviYdGilk~~D~iv~~~~d~vivT~vkAlLkP~Pl~emr~~~~~~~~~~ev~AAag~kv~A~~~~~~~Ag~P~y~v~ 875 (1145)
T TIGR00491 796 IDAVIYDGILKKGDIIVLAGKDDVIVTRVKALLKPRPLEEMREERKKFKKVDEVVAAAGVKVAAPELDKVLAGSPIYVVV 875 (1145)
T ss_pred EEEEEECCEECCCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCEEEECCCCHHHHHCCCCEEEEE
T ss_conf 99999557712078899813898057667863488883687510430475215773203587277610454577348951
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 20366899999999999999877664456578888520001230233-44433310231234555421157653565788
Q gi|254780787|r 638 SESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEF-PVIIKGDVQGSVEAIVDSLGALKNSEVCLSIV 716 (884)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ik~d~~gs~eal~~~l~~~~~~ev~i~v~ 716 (884)
T Consensus 876 ~~~~iek~~e~v~~E~e~i---------------------~i~~d~~yGvvvKADtLGSLEA~v~~Lr~~-----~vpIk 929 (1145)
T TIGR00491 876 SEEEIEKVKEEVLKEVEEI---------------------KIETDEEYGVVVKADTLGSLEALVNELRKE-----GVPIK 929 (1145)
T ss_pred CCCHHHHHHHHHHHHHHHH---------------------HHCCCCCCEEEEEECCCHHHHHHHHHHHHC-----CCCEE
T ss_conf 7822789999998767755---------------------421365111799855851189999999857-----89676
Q ss_pred ECCCCCCCHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEE---E
Q ss_conf 512685757788764325------9879996389998999999983985997502678999999999630694047---8
Q gi|254780787|r 717 HSSVGAINETDVSLAKAS------GAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSELLSPEIR---E 787 (884)
Q Consensus 717 ~~~VG~v~~~DV~~A~~~------~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~l~~~~~---~ 787 (884)
T Consensus 930 ~AdvGDv~krDvv~a~~~~~~~~~~Gai~AFnVK~Lp~~~~e~~kydik~f~~~iIY~L~e~f~~w~~~~~e~~k~~~~E 1009 (1145)
T TIGR00491 930 KADVGDVSKRDVVEAEIVKQEAKKYGAIVAFNVKVLPGAEKELKKYDIKLFSDNIIYKLMEEFEKWIEEIEEEKKRKKLE 1009 (1145)
T ss_pred EEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61038877420000756640178600899841555700243666578059725601022377899988888877643330
Q ss_pred EEEEEEEEE----EEEECCCCCCEEEEEEEEEEEECCCEEEEEE-CCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEEC
Q ss_conf 888789997----8873389870789998521784698079966-99899822625766446006687279766999728
Q gi|254780787|r 788 TFLGNAEVL----EVFAVTKLGNVAGCKVSEGKVERGSGVRLIR-NSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEK 862 (884)
Q Consensus 788 ~~~g~a~v~----~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r-~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~ 862 (884)
T Consensus 1010 ~likPa~Ikllp~~vFRrs~-PaI~GVeVL~G~lR~g~~--L~~~DG~~v--G~V~~~qd~g~nl~~A~~g~~~aiAI~d 1084 (1145)
T TIGR00491 1010 ALIKPAKIKLLPELVFRRSD-PAIVGVEVLAGVLRRGYP--LIKEDGEKV--GEVREIQDKGKNLKSASAGKEVAIAIED 1084 (1145)
T ss_pred HCCCCEEEEECCCEECCCCC-CEEEEEEECCCEECCCCC--CCHHCCCCC--CCEEEEHHCCCCCEECCCCCCCCEEECC
T ss_conf 00177025541330023367-437988861435117887--611020002--4200100337730001047866513427
Q ss_pred -C---EEEEECCEEEEEEEEEEEE
Q ss_conf -4---1100589899988999851
Q gi|254780787|r 863 -Y---DNIQAGDMIECFSIEHIKR 882 (884)
Q Consensus 863 -~---~~~~~gD~i~~~~~~~~~~ 882 (884)
T Consensus 1085 rvv~gr~~~egd~lYVdvPE~H~~ 1108 (1145)
T TIGR00491 1085 RVVLGRQVEEGDELYVDVPERHVK 1108 (1145)
T ss_pred CEEEEEEECCCCEEEEECCCHHHH
T ss_conf 178810761786688815803589