HHsearch alignment for GI: 254780787 and conserved domain: TIGR02729
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=97.64 E-value=0.00052 Score=45.40 Aligned_cols=107 Identities=27% Similarity=0.425 Sum_probs=81.8
Q ss_pred EEEEECCCCCHHHHHHHHHH--HHHHHCCCCCCEECCCEEEEECCC--CEEEEEECCCH-----------HHHHHHHHHH
Q ss_conf 89862368504467778864--222100123100012149995178--43888851661-----------5789998666
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK--ADVAKGEIGGITQHIGAYQVAYQG--KNITFLDTPGH-----------AAFYEMRARG 450 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~--~~~~~~e~ggitq~iga~~~~~~~--~~~~~iDtPGh-----------~~f~~~r~rg 450 (884)
T Consensus 161 VGLvGfPNAGKSTLLs~~S~AkPKiAdYPFTTL~P~LGvv~~~~~~Y~~~fviADIPGLIEGAs~G~GLG~~FLKHIER- 239 (296)
T TIGR02729 161 VGLVGFPNAGKSTLLSAISNAKPKIADYPFTTLEPNLGVVRVDDNKYERSFVIADIPGLIEGASEGKGLGHKFLKHIER- 239 (296)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHH-
T ss_conf 2103578874688888876278822387874565311289874874168899985686156662688753355457520-
Q ss_pred HHCCCCEEEEEECCCC-------CCH-HHHHHHHH-HHH-----CCCCEEEECCCCCCCC
Q ss_conf 4206805999983667-------402-35777898-997-----0994156123312443
Q gi|254780787|r 451 ARVTDIAVLVLAADEE-------IMP-QAIESINH-AKA-----ADVSIIVAINKIDKLG 496 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g-------~~~-qt~e~~~~-~~~-----~~~p~iva~nk~d~~~ 496 (884)
T Consensus 240 ---t~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~~ 296 (296)
T TIGR02729 240 ---TRLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLLD 296 (296)
T ss_pred ---EEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCCC
T ss_conf ---266887980687534242898889999999999975087362780799986067789