HHsearch alignment for GI: 254780787 and conserved domain: TIGR03348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.87 E-value=0.028 Score=33.52 Aligned_cols=116 Identities=17% Similarity=0.279 Sum_probs=70.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHH--CCC-C-CCEECCCEEE-EE-CCCCEEEEEECCCHH-------------
Q ss_conf 553038986236850446777886422210--012-3-1000121499-95-178438888516615-------------
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAK--GEI-G-GITQHIGAYQ-VA-YQGKNITFLDTPGHA------------- 441 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~--~e~-g-gitq~iga~~-~~-~~~~~~~~iDtPGh~------------- 441 (884)
T Consensus 109 y~LPWYlviG~~gsGKTt~l~~---Sgl~fPl~~~~~~~~~~g~ggt~~cdwwft~~AVliDtaGry~~Q~~~~~~d~~~ 185 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQN---SGLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred HHCCEEEEECCCCCCHHHHHHH---CCCCCCCCCCCCHHHCCCCCCCCCCCEEEECCEEEEECCCCEECCCCCCHHHHHH
T ss_conf 4389589978999866899983---7998877410011221588998555716527879994797602688864001899
Q ss_pred --HHHH--HHHHHHHCCCCEEEEEECCCCCCHHHH---HHHHHHH----------HCCCCEEEECCCCCCCCCCC
Q ss_conf --7899--986664206805999983667402357---7789899----------70994156123312443320
Q gi|254780787|r 442 --AFYE--MRARGARVTDIAVLVLAADEEIMPQAI---ESINHAK----------AADVSIIVAINKIDKLGADP 499 (884)
Q Consensus 442 --~f~~--~r~rg~~~~d~~ilvv~~~~g~~~qt~---e~~~~~~----------~~~~p~iva~nk~d~~~~~~ 499 (884)
T Consensus 186 W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~GF~ 260 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGFE 260 (1169)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHH
T ss_conf 999999998648989987689997899974789999999999999999999998299877599866401230699