HHsearch alignment for GI: 254780787 and conserved domain: TIGR03598
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=4.2e-18 Score=141.81 Aligned_cols=148 Identities=19% Similarity=0.311 Sum_probs=109.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH-HH-HCCCCCCEECCCEEEEECCCCEEEEEECCC----------HHHHHHHHHH
Q ss_conf 53038986236850446777886422-21-001231000121499951784388885166----------1578999866
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKAD-VA-KGEIGGITQHIGAYQVAYQGKNITFLDTPG----------HAAFYEMRAR 449 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~-~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPG----------h~~f~~~r~r 449 (884)
T Consensus 17 ~~p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~~~~---~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEE---CCCEEEEECCCHHHCCCCHHHHHHHHHHHHH
T ss_conf 8978999869998889999998689855897089973660232010---4736999777602112788889999999999
Q ss_pred ---HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf ---64206805999983667402357778989970994156123312443320002210000132000123474036311
Q gi|254780787|r 450 ---GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 450 ---g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
T Consensus 94 ~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~--~~~~~~~~i~~~l~~~~~~~~v~~IS 171 (179)
T TIGR03598 94 YLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKS--ERNKQLKKIKKALKKDADDPSVQLFS 171 (179)
T ss_pred HHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHH--HHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9999886430289874377998999999999997599889999781306989--99999999999973366889489997
Q ss_pred ECCCCCCC
Q ss_conf 00247741
Q gi|254780787|r 527 AKNNLNLD 534 (884)
Q Consensus 527 ~~~~~~~~ 534 (884)
T Consensus 172 A~~g~GID 179 (179)
T TIGR03598 172 SLKKTGIE 179 (179)
T ss_pred CCCCCCCC
T ss_conf 99983879