HHsearch alignment for GI: 254780787 and conserved domain: cd00876

>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.21  E-value=9.8e-11  Score=91.38  Aligned_cols=143  Identities=23%  Similarity=0.284  Sum_probs=97.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89862368504467778864222100123100012149---99517--84388885166157899986664206805999
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV  460 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv  460 (884)
T Consensus         2 i~ivG~~~vGKTsli~r~~~~~f~~~~~pT----i~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ilv   77 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPT----IEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILV   77 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCC----EEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf             999996996799999999619599877883----0048999999766999999997999623557889997643689997


Q ss_pred             EECCCCCCHHHHHHHHH----HH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             98366740235777898----99----70994156123312443320002210000132000123474036311002477
Q gi|254780787|r  461 LAADEEIMPQAIESINH----AK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN  532 (884)
Q Consensus       461 v~~~~g~~~qt~e~~~~----~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (884)
T Consensus        78 fd~~~---~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--~V~~~e~~--~~a~~~--~~~y~e~Sak~g~n  148 (160)
T cd00876          78 YSITD---RESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER--QVSKEEGK--ALAKEW--GCPFIETSAKDNIN  148 (160)
T ss_pred             ECCCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCC
T ss_conf             32898---78999999999999997287886299999745622307--89999999--999984--99799984798949


Q ss_pred             CCCCCCCHH
Q ss_conf             411221000
Q gi|254780787|r  533 LDKLLDAIL  541 (884)
Q Consensus       533 ~~~~~~~~~  541 (884)
T Consensus       149 V~e~F~~i~  157 (160)
T cd00876         149 IDEVFKLLV  157 (160)
T ss_pred             HHHHHHHHH
T ss_conf             899999999