HHsearch alignment for GI: 254780787 and conserved domain: cd00876
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.21 E-value=9.8e-11 Score=91.38 Aligned_cols=143 Identities=23% Similarity=0.284 Sum_probs=97.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149---99517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 2 i~ivG~~~vGKTsli~r~~~~~f~~~~~pT----i~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ilv 77 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPT----IEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILV 77 (160)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCC----EEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 999996996799999999619599877883----0048999999766999999997999623557889997643689997
Q ss_pred EECCCCCCHHHHHHHHH----HH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 98366740235777898----99----70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 461 LAADEEIMPQAIESINH----AK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~----~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
T Consensus 78 fd~~~---~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--~V~~~e~~--~~a~~~--~~~y~e~Sak~g~n 148 (160)
T cd00876 78 YSITD---RESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER--QVSKEEGK--ALAKEW--GCPFIETSAKDNIN 148 (160)
T ss_pred ECCCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCC
T ss_conf 32898---78999999999999997287886299999745622307--89999999--999984--99799984798949
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
T Consensus 149 V~e~F~~i~ 157 (160)
T cd00876 149 IDEVFKLLV 157 (160)
T ss_pred HHHHHHHHH
T ss_conf 899999999