HHsearch alignment for GI: 254780787 and conserved domain: cd00882

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.42  E-value=8e-13  Score=105.66  Aligned_cols=149  Identities=19%  Similarity=0.210  Sum_probs=106.1

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC--CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             8623685044677788642221001231000121499951--78438888516615789998666420680599998366
Q gi|254780787|r  388 IMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY--QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE  465 (884)
Q Consensus       388 v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~--~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~  465 (884)
T Consensus         1 vvG~~~~GKSsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf             92949968899999997198887646871578999999999999999999858951156789999753579999986588


Q ss_pred             CCCHHHHHH-----HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf             740235777-----898997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r  466 EIMPQAIES-----INHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI  540 (884)
Q Consensus       466 g~~~qt~e~-----~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (884)
T Consensus        81 ~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  155 (157)
T cd00882          81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEEL-----AEQLAKELGVPYFETSAKTGENVEELFEEL  155 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHH-----HHHHHHHCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             888999999999999975258984999985356154066889999-----999998789869998478883999999998


Q ss_pred             H
Q ss_conf             0
Q gi|254780787|r  541 L  541 (884)
Q Consensus       541 ~  541 (884)
T Consensus       156 ~  156 (157)
T cd00882         156 A  156 (157)
T ss_pred             H
T ss_conf             5