HHsearch alignment for GI: 254780787 and conserved domain: cd01862
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.30 E-value=3.1e-11 Score=94.80 Aligned_cols=144 Identities=26% Similarity=0.365 Sum_probs=96.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149----995178--438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~~~----y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~il 78 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKKFSNQ----YKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 99999899789999999952988987----57755516999999999999999999699983110688998652757999
Q ss_pred EEECCCCCCHHHHHHHHH-----HHH------CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 998366740235777898-----997------099415612331244332000221000013200012347403631100
Q gi|254780787|r 460 VLAADEEIMPQAIESINH-----AKA------ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~-----~~~------~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
T Consensus 79 vydvt~---~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~--V~~~e~~--~~a-~~~~~~~~~E~SAk 150 (172)
T cd01862 79 VYDVTN---PKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ--VSTKKAQ--QWC-QSNGNIPYFETSAK 150 (172)
T ss_pred EECCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCC--CCHHHHH--HHH-HHCCCCEEEEECCC
T ss_conf 933899---899999999999999972767765763899963368364189--9999999--999-97699789997526
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 2477411221000
Q gi|254780787|r 529 NNLNLDKLLDAIL 541 (884)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (884)
T Consensus 151 ~~~nV~e~F~~l~ 163 (172)
T cd01862 151 EAINVEQAFETIA 163 (172)
T ss_pred CCCCHHHHHHHHH
T ss_conf 7919899999999