HHsearch alignment for GI: 254780787 and conserved domain: cd01862

>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.30  E-value=3.1e-11  Score=94.80  Aligned_cols=144  Identities=26%  Similarity=0.365  Sum_probs=96.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             89862368504467778864222100123100012149----995178--438888516615789998666420680599
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVL  459 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il  459 (884)
T Consensus         3 ivlvGd~~VGKTsli~r~~~~~f~~~----y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~il   78 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYVNKKFSNQ----YKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL   78 (172)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEE
T ss_conf             99999899789999999952988987----57755516999999999999999999699983110688998652757999


Q ss_pred             EEECCCCCCHHHHHHHHH-----HHH------CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             998366740235777898-----997------099415612331244332000221000013200012347403631100
Q gi|254780787|r  460 VLAADEEIMPQAIESINH-----AKA------ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK  528 (884)
Q Consensus       460 vv~~~~g~~~qt~e~~~~-----~~~------~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (884)
T Consensus        79 vydvt~---~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~--V~~~e~~--~~a-~~~~~~~~~E~SAk  150 (172)
T cd01862          79 VYDVTN---PKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ--VSTKKAQ--QWC-QSNGNIPYFETSAK  150 (172)
T ss_pred             EECCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCC--CCHHHHH--HHH-HHCCCCEEEEECCC
T ss_conf             933899---899999999999999972767765763899963368364189--9999999--999-97699789997526


Q ss_pred             CCCCCCCCCCCHH
Q ss_conf             2477411221000
Q gi|254780787|r  529 NNLNLDKLLDAIL  541 (884)
Q Consensus       529 ~~~~~~~~~~~~~  541 (884)
T Consensus       151 ~~~nV~e~F~~l~  163 (172)
T cd01862         151 EAINVEQAFETIA  163 (172)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             7919899999999