HHsearch alignment for GI: 254780787 and conserved domain: cd01874
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.24 E-value=4.9e-11 Score=93.44 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=98.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC--CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 898623685044677788642221001231000121499951--784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY--QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~--~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
T Consensus 4 vv~lGd~~VGKTsli~r~~~~~f~~~y~pti~~~~~-~~~~~~~~~v~l~iwDTaG~e~~~~l~~~~~~~~~~~ilvydv 82 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 82 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE-EEEEECCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEEC
T ss_conf 999899995889999999649899986786347899-9999999999999998999745124658877138888999637
Q ss_pred CCCCCHHHHHHHHH-----H--HHCCCCEEEECCCCCCCCCCCCH--H----HHHH-HCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 66740235777898-----9--97099415612331244332000--2----2100-00132000123474036311002
Q gi|254780787|r 464 DEEIMPQAIESINH-----A--KAADVSIIVAINKIDKLGADPQK--V----RMSL-LKHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 464 ~~g~~~qt~e~~~~-----~--~~~~~p~iva~nk~d~~~~~~~~--~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
T Consensus 83 ~d---~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~~~~y~EtSAk~ 159 (175)
T cd01874 83 VS---PSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 98---788999999999999982989988999987203356666777644026566899999999975995999913378
Q ss_pred CCCCCCCCCCHHCC
Q ss_conf 47741122100002
Q gi|254780787|r 530 NLNLDKLLDAILLQ 543 (884)
Q Consensus 530 ~~~~~~~~~~~~~~ 543 (884)
T Consensus 160 g~nV~e~F~~~i~~ 173 (175)
T cd01874 160 QKGLKNVFDEAILA 173 (175)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 95979999999998