HHsearch alignment for GI: 254780787 and conserved domain: cd01874

>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.24  E-value=4.9e-11  Score=93.44  Aligned_cols=154  Identities=16%  Similarity=0.223  Sum_probs=98.0

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC--CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             898623685044677788642221001231000121499951--784388885166157899986664206805999983
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY--QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA  463 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~--~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~  463 (884)
T Consensus         4 vv~lGd~~VGKTsli~r~~~~~f~~~y~pti~~~~~-~~~~~~~~~v~l~iwDTaG~e~~~~l~~~~~~~~~~~ilvydv   82 (175)
T cd01874           4 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV   82 (175)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE-EEEEECCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEEC
T ss_conf             999899995889999999649899986786347899-9999999999999998999745124658877138888999637


Q ss_pred             CCCCCHHHHHHHHH-----H--HHCCCCEEEECCCCCCCCCCCCH--H----HHHH-HCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             66740235777898-----9--97099415612331244332000--2----2100-00132000123474036311002
Q gi|254780787|r  464 DEEIMPQAIESINH-----A--KAADVSIIVAINKIDKLGADPQK--V----RMSL-LKHDVFVESMGGDILDVEISAKN  529 (884)
Q Consensus       464 ~~g~~~qt~e~~~~-----~--~~~~~p~iva~nk~d~~~~~~~~--~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~  529 (884)
T Consensus        83 ~d---~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~~~~y~EtSAk~  159 (175)
T cd01874          83 VS---PSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             CC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             98---788999999999999982989988999987203356666777644026566899999999975995999913378


Q ss_pred             CCCCCCCCCCHHCC
Q ss_conf             47741122100002
Q gi|254780787|r  530 NLNLDKLLDAILLQ  543 (884)
Q Consensus       530 ~~~~~~~~~~~~~~  543 (884)
T Consensus       160 g~nV~e~F~~~i~~  173 (175)
T cd01874         160 QKGLKNVFDEAILA  173 (175)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             95979999999998