HHsearch alignment for GI: 254780787 and conserved domain: cd01875
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.05 E-value=2e-09 Score=82.39 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=95.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECC-CEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 389862368504467778864222100123100012-1499951784388885166157899986664206805999983
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHI-GAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~i-ga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
T Consensus 5 KivlvGd~~VGKTsli~r~~~~~F~~~y~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvfdv 84 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSI 84 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEC
T ss_conf 99999999989999999997299998646621000467899999999999985888700356778774478689999857
Q ss_pred CCCCCHHHHH-HHH-HHH--HCCCCEEEECCCCCCCCCCCCHHHHHHH---------CCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 6674023577-789-899--7099415612331244332000221000---------01320001234740363110024
Q gi|254780787|r 464 DEEIMPQAIE-SIN-HAK--AADVSIIVAINKIDKLGADPQKVRMSLL---------KHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 464 ~~g~~~qt~e-~~~-~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
T Consensus 85 t~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~--~~~~~~e~~~~~vs~eeg~~~a~~~~~~~y~EtSAkt~ 162 (191)
T cd01875 85 ASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD--TLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQ 162 (191)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH--HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 9778899999999999997096997899988801023457--78887764137556999999999809988999068989
Q ss_pred CCCCCCCCCHH
Q ss_conf 77411221000
Q gi|254780787|r 531 LNLDKLLDAIL 541 (884)
Q Consensus 531 ~~~~~~~~~~~ 541 (884)
T Consensus 163 ~nV~e~F~~l~ 173 (191)
T cd01875 163 DGVKEVFAEAV 173 (191)
T ss_pred CCHHHHHHHHH
T ss_conf 69899999999