HHsearch alignment for GI: 254780787 and conserved domain: cd01875

>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.05  E-value=2e-09  Score=82.39  Aligned_cols=155  Identities=15%  Similarity=0.153  Sum_probs=95.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECC-CEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             389862368504467778864222100123100012-1499951784388885166157899986664206805999983
Q gi|254780787|r  385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHI-GAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA  463 (884)
Q Consensus       385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~i-ga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~  463 (884)
T Consensus         5 KivlvGd~~VGKTsli~r~~~~~F~~~y~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvfdv   84 (191)
T cd01875           5 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSI   84 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEC
T ss_conf             99999999989999999997299998646621000467899999999999985888700356778774478689999857


Q ss_pred             CCCCCHHHHH-HHH-HHH--HCCCCEEEECCCCCCCCCCCCHHHHHHH---------CCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             6674023577-789-899--7099415612331244332000221000---------01320001234740363110024
Q gi|254780787|r  464 DEEIMPQAIE-SIN-HAK--AADVSIIVAINKIDKLGADPQKVRMSLL---------KHDVFVESMGGDILDVEISAKNN  530 (884)
Q Consensus       464 ~~g~~~qt~e-~~~-~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  530 (884)
T Consensus        85 t~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~--~~~~~~e~~~~~vs~eeg~~~a~~~~~~~y~EtSAkt~  162 (191)
T cd01875          85 ASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD--TLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQ  162 (191)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH--HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             9778899999999999997096997899988801023457--78887764137556999999999809988999068989


Q ss_pred             CCCCCCCCCHH
Q ss_conf             77411221000
Q gi|254780787|r  531 LNLDKLLDAIL  541 (884)
Q Consensus       531 ~~~~~~~~~~~  541 (884)
T Consensus       163 ~nV~e~F~~l~  173 (191)
T cd01875         163 DGVKEVFAEAV  173 (191)
T ss_pred             CCHHHHHHHHH
T ss_conf             69899999999