HHsearch alignment for GI: 254780787 and conserved domain: cd01883
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=4.6e-33 Score=244.12 Aligned_cols=150 Identities=28% Similarity=0.297 Sum_probs=120.3
Q ss_pred EEEEECCCCCHHHHHHHHHH-HH-----------HHHCC-------------------CCCCEECCCEEEEECCCCEEEE
Q ss_conf 89862368504467778864-22-----------21001-------------------2310001214999517843888
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK-AD-----------VAKGE-------------------IGGITQHIGAYQVAYQGKNITF 434 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~-~~-----------~~~~e-------------------~ggitq~iga~~~~~~~~~~~~ 434 (884)
T Consensus 2 i~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~i 81 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTI 81 (219)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEE
T ss_conf 89996689989999999999859976889999999998549987505566138987985892588589999849936999
Q ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEECCCCCCCC-CCCCHHHH-
Q ss_conf 85166157899986664206805999983667-------402357778989970994-156123312443-32000221-
Q gi|254780787|r 435 LDTPGHAAFYEMRARGARVTDIAVLVLAADEE-------IMPQAIESINHAKAADVS-IIVAINKIDKLG-ADPQKVRM- 504 (884)
Q Consensus 435 iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g-------~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~-~~~~~~~~- 504 (884)
T Consensus 82 iDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~~y~~~rf~~ 161 (219)
T cd01883 82 LDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDE 161 (219)
T ss_pred EECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 87897266788999877531668999985767510366777659999999998499748999987536886525999999
Q ss_pred ---HHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf ---0000132000123474036311002477411
Q gi|254780787|r 505 ---SLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 505 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
T Consensus 162 i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~ 195 (219)
T cd01883 162 IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 9999999999829995661599933676630466