HHsearch alignment for GI: 254780787 and conserved domain: cd01883

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00  E-value=4.6e-33  Score=244.12  Aligned_cols=150  Identities=28%  Similarity=0.297  Sum_probs=120.3

Q ss_pred             EEEEECCCCCHHHHHHHHHH-HH-----------HHHCC-------------------CCCCEECCCEEEEECCCCEEEE
Q ss_conf             89862368504467778864-22-----------21001-------------------2310001214999517843888
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRK-AD-----------VAKGE-------------------IGGITQHIGAYQVAYQGKNITF  434 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~-~~-----------~~~~e-------------------~ggitq~iga~~~~~~~~~~~~  434 (884)
T Consensus         2 i~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~i   81 (219)
T cd01883           2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTI   81 (219)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEE
T ss_conf             89996689989999999999859976889999999998549987505566138987985892588589999849936999


Q ss_pred             EECCCHHHHHHHHHHHHHCCCCEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEECCCCCCCC-CCCCHHHH-
Q ss_conf             85166157899986664206805999983667-------402357778989970994-156123312443-32000221-
Q gi|254780787|r  435 LDTPGHAAFYEMRARGARVTDIAVLVLAADEE-------IMPQAIESINHAKAADVS-IIVAINKIDKLG-ADPQKVRM-  504 (884)
Q Consensus       435 iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g-------~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~-~~~~~~~~-  504 (884)
T Consensus        82 iDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~~y~~~rf~~  161 (219)
T cd01883          82 LDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDE  161 (219)
T ss_pred             EECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf             87897266788999877531668999985767510366777659999999998499748999987536886525999999


Q ss_pred             ---HHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             ---0000132000123474036311002477411
Q gi|254780787|r  505 ---SLLKHDVFVESMGGDILDVEISAKNNLNLDK  535 (884)
Q Consensus       505 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (884)
T Consensus       162 i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~  195 (219)
T cd01883         162 IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE  195 (219)
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             9999999999829995661599933676630466