HHsearch alignment for GI: 254780787 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00 E-value=8.9e-39 Score=283.22 Aligned_cols=153 Identities=33% Similarity=0.384 Sum_probs=131.1
Q ss_pred EEEEECCCCCHHHHHHHHHH-HHHHH---------------CCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 89862368504467778864-22210---------------012310001214999517843888851661578999866
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK-ADVAK---------------GEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~-~~~~~---------------~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~r 449 (884)
T Consensus 5 v~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~dF~~~~~~ 84 (194)
T cd01891 5 IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVER 84 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHHHHHHHH
T ss_conf 99990689879999999999748763046521686147588887287633458999989988999989984777778987
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCC--CCCCCCCCCEEEEEEE
Q ss_conf 64206805999983667402357778989970994156123312443320002210000132--0001234740363110
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDV--FVESMGGDILDVEISA 527 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 527 (884)
T Consensus 85 ~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~~~~~pii~~SA 164 (194)
T cd01891 85 VLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASA 164 (194)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 76434467898653789758999999999872997499885645898889999999999998639993335885787256
Q ss_pred CCCCCCCCCCC
Q ss_conf 02477411221
Q gi|254780787|r 528 KNNLNLDKLLD 538 (884)
Q Consensus 528 ~~~~~~~~~~~ 538 (884)
T Consensus 165 ~~G~~~d~~~~ 175 (194)
T cd01891 165 KNGWASLNLED 175 (194)
T ss_pred CCCCCCCCCCC
T ss_conf 55335778865