HHsearch alignment for GI: 254780787 and conserved domain: cd03697
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.11 E-value=9.5e-06 Score=57.27 Aligned_cols=80 Identities=16% Similarity=0.437 Sum_probs=67.9
Q ss_pred EEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECC--EEEEECC
Q ss_conf 99978873389870789998521784698079966998998226257664460066872797669997284--1100589
Q gi|254780787|r 793 AEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKY--DNIQAGD 870 (884)
Q Consensus 793 a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD 870 (884)
T Consensus 3 m~Id~~f~v~G~GtVvtGtv~~G~i~~gd~v~i~~~~~~-~~~~V~sIq~~~~~v~~a~aG~rv~l~l~gi~~~~i~rG~ 81 (87)
T cd03697 3 MPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGET-LKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERGM 81 (87)
T ss_pred EEEEEEEECCCEEEEEEEEECCCCEECCCEEEEECCCCC-CEEEEEEEHHCCCCCCCCCCCCEEEEEECCCCHHHCCCCC
T ss_conf 368169966986899999955260847999999728997-1899999087194335379867999998588889837703
Q ss_pred EEE
Q ss_conf 899
Q gi|254780787|r 871 MIE 873 (884)
Q Consensus 871 ~i~ 873 (884)
T Consensus 82 vl~ 84 (87)
T cd03697 82 VLA 84 (87)
T ss_pred EEE
T ss_conf 994