HHsearch alignment for GI: 254780787 and conserved domain: cd04088
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=96.43 E-value=0.0065 Score=37.90 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=55.9
Q ss_pred EEEEC---CCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHH----CCHHHHHHHCCCEEEEEEECCEEEEEC
Q ss_conf 88733---89870789998521784698079966998998226257664----460066872797669997284110058
Q gi|254780787|r 797 EVFAV---TKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKR----FKDEVSEVHAGQDCGMAFEKYDNIQAG 869 (884)
Q Consensus 797 ~vF~~---~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~----~k~~v~ev~~g~ecgi~~~~~~~~~~g 869 (884)
T Consensus 4 ~VFK~~~d~~~Gri~~~RV~~G~l~~g~~v~~~~~~~~~---kv~~l~~~~g~~~~~v~~~~aGdI~a--i~gl~~~~~G 78 (83)
T cd04088 4 LVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKE---RVGRLLRMHGKKQEEVEEAGAGDIGA--VAGLKDTATG 78 (83)
T ss_pred EEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCEEE---EECEEEEEECCCCEECCEECCCCEEE--EECCCCCCCC
T ss_conf 999766559888699999958998679758860651048---82204788569823946888999999--9588887056
Q ss_pred CEE
Q ss_conf 989
Q gi|254780787|r 870 DMI 872 (884)
Q Consensus 870 D~i 872 (884)
T Consensus 79 DTl 81 (83)
T cd04088 79 DTL 81 (83)
T ss_pred CCC
T ss_conf 753