HHsearch alignment for GI: 254780787 and conserved domain: cd04092

>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=95.23  E-value=0.078  Score=30.49  Aligned_cols=75  Identities=19%  Similarity=0.210  Sum_probs=57.6

Q ss_pred             EEEEC---CCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHH-HCCHHHHHHHCCCEEEEEEECCEEEEECCEE
Q ss_conf             88733---8987078999852178469807996699899822625766-4460066872797669997284110058989
Q gi|254780787|r  797 EVFAV---TKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLK-RFKDEVSEVHAGQDCGMAFEKYDNIQAGDMI  872 (884)
Q Consensus       797 ~vF~~---~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~i  872 (884)
T Consensus         4 lVFK~~~D~~~G~ls~vRVysG~l~~g~~v~n~~~~~~ekv~~l~~~~g~~~~~v~~~~AGdI~av--~gl~~~~tGDTl   81 (83)
T cd04092           4 LAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGLKQTRTGDTL   81 (83)
T ss_pred             EEEEEECCCCCCCEEEEEEEECEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEE--ECCCCCCCCCEE
T ss_conf             999865079844099999970789789999968899629730888975799329978969989999--787786038897


Q ss_pred             E
Q ss_conf             9
Q gi|254780787|r  873 E  873 (884)
Q Consensus       873 ~  873 (884)
T Consensus        82 t   82 (83)
T cd04092          82 V   82 (83)
T ss_pred             C
T ss_conf             5