HHsearch alignment for GI: 254780787 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.55 E-value=3.6e-07 Score=67.00 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=74.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC-------CCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 898623685044677788642221001231000121499951-------7843888851661578999866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY-------QGKNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~-------~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
T Consensus 3 IlllGDsgVGKTSL~~~~~~~~f~~~~~~TiG~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqery~sl~~~yYr~a~gvI 82 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGII 82 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 99999999899999999983988888888503678999999337876783899999989987757767899758898999
Q ss_pred EEEECCCCCCHHHHHHHH-----------------------HHHHCCCCEEEECCCCCCCCCC
Q ss_conf 999836674023577789-----------------------8997099415612331244332
Q gi|254780787|r 459 LVLAADEEIMPQAIESIN-----------------------HAKAADVSIIVAINKIDKLGAD 498 (884)
Q Consensus 459 lvv~~~~g~~~qt~e~~~-----------------------~~~~~~~p~iva~nk~d~~~~~ 498 (884)
T Consensus 83 LVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r 145 (202)
T cd04102 83 LVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCC
T ss_conf 999894989998699999999753676665455666555333467897589997606524343