HHsearch alignment for GI: 254780787 and conserved domain: cd04119

>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.18  E-value=2e-10  Score=89.26  Aligned_cols=150  Identities=21%  Similarity=0.281  Sum_probs=99.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCC--CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             8986236850446777886422210012--31000121499951784388885166157899986664206805999983
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEI--GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA  463 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~--ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~  463 (884)
T Consensus         3 ivvvG~~~vGKTSLi~r~~~~~f~~~y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~ad~~ilvydi   82 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDV   82 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECC
T ss_conf             99999599568999999963999998589765577799999999999999998999764789999998747788999508


Q ss_pred             CCCCCHHHHHHHH-HHH--------HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             6674023577789-899--------7099415612331244332000221000013200012347403631100247741
Q gi|254780787|r  464 DEEIMPQAIESIN-HAK--------AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD  534 (884)
Q Consensus       464 ~~g~~~qt~e~~~-~~~--------~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (884)
T Consensus        83 t~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r--~v~~~~--~~~~a~~~--~~~~~E~Sak~g~~V~  156 (168)
T cd04119          83 TDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR--AVSEDE--GRLWAESK--GFKYFETSACTGEGVN  156 (168)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCC--CCCHHH--HHHHHHHC--CCEEEEECCCCCCCHH
T ss_conf             97444899999999999982453456686299985403444257--889999--99999986--9989998857790889


Q ss_pred             CCCCCHH
Q ss_conf             1221000
Q gi|254780787|r  535 KLLDAIL  541 (884)
Q Consensus       535 ~~~~~~~  541 (884)
T Consensus       157 e~F~~l~  163 (168)
T cd04119         157 EMFQTLF  163 (168)
T ss_pred             HHHHHHH
T ss_conf             9999999