HHsearch alignment for GI: 254780787 and conserved domain: cd04129

>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.05  E-value=5.8e-10  Score=86.12  Aligned_cols=148  Identities=20%  Similarity=0.279  Sum_probs=96.7

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE---ECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             8986236850446777886422210012310001214999---5178--4388885166157899986664206805999
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV---AYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV  460 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~---~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv  460 (884)
T Consensus         4 ivllGd~~VGKTsLi~r~~~~~f~~----~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~~~~~~~~~~~~a~~~ilv   79 (187)
T cd04129           4 LVIVGDGACGKTSLLSVFTLGEFPE----EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCC----CCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEECCCCEEEEE
T ss_conf             9999989976899999998298999----878866789899999999999999997888703454604123388589997


Q ss_pred             EECCCCCCHHHHHHHH-----HHHH--CCCCEEEECCCCCCCCCCCCHHH----HH--HHCCCCCCCCCCCCCEEEEEEE
Q ss_conf             9836674023577789-----8997--09941561233124433200022----10--0001320001234740363110
Q gi|254780787|r  461 LAADEEIMPQAIESIN-----HAKA--ADVSIIVAINKIDKLGADPQKVR----MS--LLKHDVFVESMGGDILDVEISA  527 (884)
Q Consensus       461 v~~~~g~~~qt~e~~~-----~~~~--~~~p~iva~nk~d~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~  527 (884)
T Consensus        80 ydi~~---~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~-~~~~y~EtSA  155 (187)
T cd04129          80 FAVDT---PDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI-GAKKYMECSA  155 (187)
T ss_pred             CCCCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHC-CCCEEEEECC
T ss_conf             02698---6679999999999999858799889998860011341121112231557899999999984-9978999688


Q ss_pred             CCCCCCCCCCCCHH
Q ss_conf             02477411221000
Q gi|254780787|r  528 KNNLNLDKLLDAIL  541 (884)
Q Consensus       528 ~~~~~~~~~~~~~~  541 (884)
T Consensus       156 k~~~nV~e~F~~~~  169 (187)
T cd04129         156 LTGEGVDDVFEAAT  169 (187)
T ss_pred             CCCCCHHHHHHHHH
T ss_conf             99979899999999