HHsearch alignment for GI: 254780787 and conserved domain: cd04132
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.23 E-value=4.2e-11 Score=93.92 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=97.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE---EC-CC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214999---51-78--438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV---AY-QG--KNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~---~~-~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F~--~~~~pT--i~~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~~~~~a~~~il 78 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGKFP--EEYVPT--VFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLI 78 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCC--EEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHCCEEEE
T ss_conf 999994997699999999639899--975896--6479999999549989999999699971105343445300348889
Q ss_pred EEECCCCCCHHHHH-H-HHHHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 99836674023577-7-898997--0994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 460 VLAADEEIMPQAIE-S-INHAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 460 vv~~~~g~~~qt~e-~-~~~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
T Consensus 79 vydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~-~~~~~y~EtSAk~g~nV~e 157 (187)
T cd04132 79 CYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK-QGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHH-CCCCEEEEECCCCCCCHHH
T ss_conf 503687677999999999999986899997999987221221223765789999999998-5997899957688929899
Q ss_pred CCCCHHC
Q ss_conf 2210000
Q gi|254780787|r 536 LLDAILL 542 (884)
Q Consensus 536 ~~~~~~~ 542 (884)
T Consensus 158 ~F~~l~~ 164 (187)
T cd04132 158 VFDTAIE 164 (187)
T ss_pred HHHHHHH
T ss_conf 9999999