HHsearch alignment for GI: 254780787 and conserved domain: cd04134

>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.17  E-value=2.7e-10  Score=88.36  Aligned_cols=156  Identities=20%  Similarity=0.225  Sum_probs=97.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             8986236850446777886422210-012310001214999517843888851661578999866642068059999836
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD  464 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~  464 (884)
T Consensus         3 ivlvGd~~VGKTsli~r~~~~~F~~~y~~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~i~~~~y~~a~~~ilvydi~   82 (189)
T cd04134           3 VVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVD   82 (189)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECC
T ss_conf             99999799769999999970999998688378999999999999999999847785000035567643786459999789


Q ss_pred             CCCCHHHHHH--HHHHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCCC-------CCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             6740235777--898997--099415612331244332000221000013-------20001234740363110024774
Q gi|254780787|r  465 EEIMPQAIES--INHAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKHD-------VFVESMGGDILDVEISAKNNLNL  533 (884)
Q Consensus       465 ~g~~~qt~e~--~~~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  533 (884)
T Consensus        83 ~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~y~EtSAkt~~nV  162 (189)
T cd04134          83 SPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGV  162 (189)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             87899999999999999749799789999880046532356777663046658999999999829978999680679498


Q ss_pred             CCCCCCHH
Q ss_conf             11221000
Q gi|254780787|r  534 DKLLDAIL  541 (884)
Q Consensus       534 ~~~~~~~~  541 (884)
T Consensus       163 ~e~F~~la  170 (189)
T cd04134         163 NEAFTEAA  170 (189)
T ss_pred             HHHHHHHH
T ss_conf             99999999