HHsearch alignment for GI: 254780787 and conserved domain: cd04134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.17 E-value=2.7e-10 Score=88.36 Aligned_cols=156 Identities=20% Similarity=0.225 Sum_probs=97.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8986236850446777886422210-012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F~~~y~~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~i~~~~y~~a~~~ilvydi~ 82 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVD 82 (189)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECC
T ss_conf 99999799769999999970999998688378999999999999999999847785000035567643786459999789
Q ss_pred CCCCHHHHHH--HHHHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCCC-------CCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 6740235777--898997--099415612331244332000221000013-------20001234740363110024774
Q gi|254780787|r 465 EEIMPQAIES--INHAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKHD-------VFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 465 ~g~~~qt~e~--~~~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
T Consensus 83 ~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~y~EtSAkt~~nV 162 (189)
T cd04134 83 SPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGV 162 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 87899999999999999749799789999880046532356777663046658999999999829978999680679498
Q ss_pred CCCCCCHH
Q ss_conf 11221000
Q gi|254780787|r 534 DKLLDAIL 541 (884)
Q Consensus 534 ~~~~~~~~ 541 (884)
T Consensus 163 ~e~F~~la 170 (189)
T cd04134 163 NEAFTEAA 170 (189)
T ss_pred HHHHHHHH
T ss_conf 99999999